RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 GAGE2DQ9UEU5 116 aa4.94□□□□□ -1.62
COL6A3-208ENST00000468792 PKIGQ9Y2B9 76 aa4.94□□□□□ -1.62
COL6A3-208ENST00000468792 MEGF8Q7Z7M0 2845 aa4.94□□□□□ -1.62
COL6A3-208ENST00000468792 DNAH17Q9UFH2 4485 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 MT-ATP8P03928 68 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 PDE6GP18545 87 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 CASC10Q5T4H9 136 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 LINC00643Q86TS7 51 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 UBE2DNLQ8IWF7 75 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 NKAPP1Q8N9T2 125 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 KRTAP1-5Q9BYS1 174 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 IMUPQ9GZP8 106 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 TENM2Q9NT68 2774 aa4.93□□□□□ -1.62
COL6A3-208ENST00000468792 PRYO14603 147 aa4.92□□□□□ -1.62
COL6A3-208ENST00000468792 SPRR1AP35321 89 aa4.92□□□□□ -1.62
COL6A3-208ENST00000468792 IGLV1-50A0A075B6I6 118 aa4.91□□□□□ -1.62
COL6A3-208ENST00000468792 LOC110117498A0A087WWA1 95 aa4.91□□□□□ -1.62
COL6A3-208ENST00000468792 TRBV7-7A0A0K0K1E9 115 aa4.91□□□□□ -1.62
COL6A3-208ENST00000468792 NBDYA0A0U1RRE5 68 aa4.91□□□□□ -1.62
COL6A3-208ENST00000468792 C16orf90A8MZG2 172 aa4.91□□□□□ -1.62
COL6A3-208ENST00000468792 CCKP06307 115 aa4.91□□□□□ -1.62
COL6A3-208ENST00000468792 C7orf33Q8WU49 177 aa4.91□□□□□ -1.62
COL6A3-208ENST00000468792 KRTAP4-16G5E9R7 235 aaPredicted RBP4.9□□□□□ -1.63
COL6A3-208ENST00000468792 GAGE2BQ13066 116 aa4.9□□□□□ -1.63
COL6A3-208ENST00000468792 SERTAD4-AS1Q5TG53 156 aa4.9□□□□□ -1.63
COL6A3-208ENST00000468792 Q6ZQY7 126 aa4.9□□□□□ -1.63
COL6A3-208ENST00000468792 DHRS4-AS1Q9P1J3 65 aa4.9□□□□□ -1.63
COL6A3-208ENST00000468792 PSCAO43653 123 aa4.89□□□□□ -1.63
COL6A3-208ENST00000468792 RBM3P98179 157 aaKnown RBP4.89□□□□□ -1.63
COL6A3-208ENST00000468792 Q6ZRN7 208 aaPredicted RBP4.89□□□□□ -1.63
COL6A3-208ENST00000468792 C14orf132Q9NPU4 83 aa4.89□□□□□ -1.63
COL6A3-208ENST00000468792 LRCOL1A6NCL2 159 aa4.88□□□□□ -1.63
COL6A3-208ENST00000468792 GAGE2AQ6NT46 116 aa4.88□□□□□ -1.63
COL6A3-208ENST00000468792 MRPL55Q7Z7F7 128 aaKnown RBP4.88□□□□□ -1.63
COL6A3-208ENST00000468792 KRTAP7-1Q8IUC3 87 aa4.88□□□□□ -1.63
COL6A3-208ENST00000468792 HECTD4Q9Y4D8 3996 aa4.88□□□□□ -1.63
COL6A3-208ENST00000468792 B5MCH6 92 aa4.87□□□□□ -1.63
COL6A3-208ENST00000468792 Q6ZQT0 140 aa4.87□□□□□ -1.63
COL6A3-208ENST00000468792 Q6ZRX8 168 aa4.87□□□□□ -1.63
COL6A3-208ENST00000468792 C9orf163Q8N9P6 203 aa4.87□□□□□ -1.63
COL6A3-208ENST00000468792 SMCR5Q8TEV8 140 aa4.87□□□□□ -1.63
COL6A3-208ENST00000468792 LINC00474Q9P2X8 69 aa4.87□□□□□ -1.63
COL6A3-208ENST00000468792 TRBV7-4A0A0J9YYF1 115 aa4.86□□□□□ -1.63
COL6A3-208ENST00000468792 A0A1B0GW54 56 aa4.86□□□□□ -1.63
COL6A3-208ENST00000468792 EPM2AB3EWF7 344 aa4.86□□□□□ -1.63
COL6A3-208ENST00000468792 ATP5EP2Q5VTU8 51 aa4.86□□□□□ -1.63
COL6A3-208ENST00000468792 DSCR8Q96T75 97 aa4.86□□□□□ -1.63
COL6A3-208ENST00000468792 LAMTOR3Q9UHA4 124 aa4.86□□□□□ -1.63
COL6A3-208ENST00000468792 IGLV5-48A0A075B6I7 105 aa4.85□□□□□ -1.63
COL6A3-208ENST00000468792 FAM168BA1KXE4 195 aa4.85□□□□□ -1.63
COL6A3-208ENST00000468792 NDUFV3P56181 108 aaKnown RBP4.85□□□□□ -1.63
COL6A3-208ENST00000468792 Q6JHZ5 121 aa4.85□□□□□ -1.63
COL6A3-208ENST00000468792 LINC00846Q9NV44 126 aa4.85□□□□□ -1.63
COL6A3-208ENST00000468792 A0A096LNI7 61 aa4.84□□□□□ -1.63
COL6A3-208ENST00000468792 A0A1B0GV72 72 aa4.84□□□□□ -1.63
COL6A3-208ENST00000468792 ETDCA0A1B0GVM5 59 aa4.84□□□□□ -1.63
COL6A3-208ENST00000468792 H0Y9J4 135 aa4.84□□□□□ -1.63
COL6A3-208ENST00000468792 Q6ZR54 194 aa4.84□□□□□ -1.63
COL6A3-208ENST00000468792 ALMS1Q8TCU4 4167 aa4.83□□□□□ -1.64
COL6A3-208ENST00000468792 KMT2AQ03164 3969 aa4.83□□□□□ -1.64
COL6A3-208ENST00000468792 LINC01547P58512 204 aaPredicted RBP4.83□□□□□ -1.64
COL6A3-208ENST00000468792 REG3GQ6UW15 175 aa4.83□□□□□ -1.64
COL6A3-208ENST00000468792 Q9BRP9 147 aa4.83□□□□□ -1.64
COL6A3-208ENST00000468792 DNAH11Q96DT5 4516 aa4.83□□□□□ -1.64
COL6A3-208ENST00000468792 DNAH8Q96JB1 4490 aa4.83□□□□□ -1.64
COL6A3-208ENST00000468792 FBN3Q75N90 2809 aa4.82□□□□□ -1.64
COL6A3-208ENST00000468792 A0A1W2PNN7 141 aa4.82□□□□□ -1.64
COL6A3-208ENST00000468792 RPL37AP8A6NKH3 93 aa4.82□□□□□ -1.64
COL6A3-208ENST00000468792 FAM19A5Q7Z5A7 132 aaPredicted RBP4.82□□□□□ -1.64
COL6A3-208ENST00000468792 Q8N377 158 aa4.82□□□□□ -1.64
COL6A3-208ENST00000468792 UBL5Q9BZL1 73 aa4.82□□□□□ -1.64
COL6A3-208ENST00000468792 A0A087WTM6 91 aa4.8□□□□□ -1.64
COL6A3-208ENST00000468792 HIST1H4AP62805 103 aaKnown RBP4.8□□□□□ -1.64
COL6A3-208ENST00000468792 DNAH5Q8TE73 4624 aa4.79□□□□□ -1.64
COL6A3-208ENST00000468792 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.79□□□□□ -1.64
COL6A3-208ENST00000468792 CXCL6P80162 114 aa4.79□□□□□ -1.64
COL6A3-208ENST00000468792 FRAS1Q86XX4 4008 aa4.78□□□□□ -1.64
COL6A3-208ENST00000468792 IGKV2-24A0A0C4DH68 120 aa4.78□□□□□ -1.64
COL6A3-208ENST00000468792 SPACA4Q8TDM5 124 aa4.78□□□□□ -1.64
COL6A3-208ENST00000468792 ANAPC13Q9BS18 74 aa4.78□□□□□ -1.64
COL6A3-208ENST00000468792 IGLV8-61A0A075B6I0 122 aa4.77□□□□□ -1.65
COL6A3-208ENST00000468792 SPRR1BP22528 89 aa4.77□□□□□ -1.65
COL6A3-208ENST00000468792 UBE2BP63146 152 aa4.77□□□□□ -1.65
COL6A3-208ENST00000468792 WWC2-AS2Q96NR7 200 aa4.77□□□□□ -1.65
COL6A3-208ENST00000468792 BCE1O60756 84 aa4.76□□□□□ -1.65
COL6A3-208ENST00000468792 ERC2-IT1O76042 136 aa4.76□□□□□ -1.65
COL6A3-208ENST00000468792 C1orf134Q5TEV5 83 aa4.76□□□□□ -1.65
COL6A3-208ENST00000468792 Q6ZVQ6 151 aa4.76□□□□□ -1.65
COL6A3-208ENST00000468792 SPRR4Q96PI1 79 aa4.76□□□□□ -1.65
COL6A3-208ENST00000468792 TGP01266 2768 aa4.76□□□□□ -1.65
COL6A3-208ENST00000468792 FAT2Q9NYQ8 4349 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 FAM236AA0A1B0GUQ0 79 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 FAM236BA0A1B0GV22 79 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 C3orf84H3BNL1 204 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 ATOX1O00244 68 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 CHTF8P0CG12 524 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 PHF5AQ7RTV0 110 aaKnown RBP4.75□□□□□ -1.65
COL6A3-208ENST00000468792 FAM19A1Q7Z5A9 133 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 SMIM29Q86T20 159 aa4.75□□□□□ -1.65
COL6A3-208ENST00000468792 KRTAP13-1Q8IUC0 172 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms