RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TM2D3Q9BRN9 247 aa10.8□□□□□ -0.68
CLCNKA-203ENST00000439316 COL7A1Q02388 2944 aa10.79□□□□□ -0.68
CLCNKA-203ENST00000439316 DPH3Q96FX2 82 aa10.79□□□□□ -0.68
CLCNKA-203ENST00000439316 ESRGQ1W209 222 aa10.79□□□□□ -0.68
CLCNKA-203ENST00000439316 F8WDY8 70 aa10.77□□□□□ -0.68
CLCNKA-203ENST00000439316 TRAV7A0A075B6U4 112 aa10.77□□□□□ -0.69
CLCNKA-203ENST00000439316 C1orf43Q9BWL3 253 aa10.77□□□□□ -0.69
CLCNKA-203ENST00000439316 STAB2Q8WWQ8 2551 aa10.76□□□□□ -0.69
CLCNKA-203ENST00000439316 LINC01556Q5JQF7 62 aa10.76□□□□□ -0.69
CLCNKA-203ENST00000439316 Q6ZRP5 223 aa10.76□□□□□ -0.69
CLCNKA-203ENST00000439316 DNAH9Q9NYC9 4486 aa10.76□□□□□ -0.69
CLCNKA-203ENST00000439316 FAM19A5Q7Z5A7 132 aaPredicted RBP10.76□□□□□ -0.69
CLCNKA-203ENST00000439316 C20orf197Q8N268 126 aa10.75□□□□□ -0.69
CLCNKA-203ENST00000439316 C11orf45Q8TAV5 145 aa10.75□□□□□ -0.69
CLCNKA-203ENST00000439316 TRAV10A0A0B4J240 114 aa10.73□□□□□ -0.69
CLCNKA-203ENST00000439316 IGKV2D-24A0A075B6R9 120 aa10.72□□□□□ -0.69
CLCNKA-203ENST00000439316 SYCNQ0VAF6 134 aa10.72□□□□□ -0.69
CLCNKA-203ENST00000439316 OXTP01178 125 aa10.71□□□□□ -0.69
CLCNKA-203ENST00000439316 KCNQ1DNQ9H478 68 aa10.7□□□□□ -0.7
CLCNKA-203ENST00000439316 SCXQ7RTU7 201 aa10.7□□□□□ -0.7
CLCNKA-203ENST00000439316 DEFB131BA0A096LNP1 70 aa10.69□□□□□ -0.7
CLCNKA-203ENST00000439316 KLKP1Q107X0 134 aa10.68□□□□□ -0.7
CLCNKA-203ENST00000439316 SERTAD4-AS1Q5TG53 156 aa10.68□□□□□ -0.7
CLCNKA-203ENST00000439316 NKAPP1Q8N9T2 125 aa10.68□□□□□ -0.7
CLCNKA-203ENST00000439316 PRKDCP78527 4128 aaKnown RBP10.68□□□□□ -0.7
CLCNKA-203ENST00000439316 MEGF8Q7Z7M0 2845 aa10.67□□□□□ -0.7
CLCNKA-203ENST00000439316 C7orf33Q8WU49 177 aa10.67□□□□□ -0.7
CLCNKA-203ENST00000439316 H7BZZ5 65 aa10.66□□□□□ -0.7
CLCNKA-203ENST00000439316 DNAH10OSP0CZ25 163 aa10.66□□□□□ -0.7
CLCNKA-203ENST00000439316 TLX1NBP0CAT3 122 aa10.66□□□□□ -0.7
CLCNKA-203ENST00000439316 B9D2Q9BPU9 175 aa10.66□□□□□ -0.7
CLCNKA-203ENST00000439316 FAM236DA0A1B0GTK5 79 aa10.65□□□□□ -0.7
CLCNKA-203ENST00000439316 FAM236CP0DP71 79 aa10.65□□□□□ -0.7
CLCNKA-203ENST00000439316 KRTAP21-3Q3LHN1 58 aa10.65□□□□□ -0.71
CLCNKA-203ENST00000439316 PLA2G2DQ9UNK4 145 aa10.65□□□□□ -0.71
CLCNKA-203ENST00000439316 Q8N377 158 aa10.63□□□□□ -0.71
CLCNKA-203ENST00000439316 IGLV5-48A0A075B6I7 105 aa10.61□□□□□ -0.71
CLCNKA-203ENST00000439316 IGLV5-37A0A075B6J1 123 aa10.61□□□□□ -0.71
CLCNKA-203ENST00000439316 IGKV4-1P06312 121 aa10.61□□□□□ -0.71
CLCNKA-203ENST00000439316 KRTAP4-16G5E9R7 235 aaPredicted RBP10.6□□□□□ -0.71
CLCNKA-203ENST00000439316 RMI2Q96E14 147 aa10.6□□□□□ -0.71
CLCNKA-203ENST00000439316 PRYO14603 147 aa10.59□□□□□ -0.71
CLCNKA-203ENST00000439316 NREPQ16612 68 aa10.59□□□□□ -0.71
CLCNKA-203ENST00000439316 Q6ZRX8 168 aa10.59□□□□□ -0.71
CLCNKA-203ENST00000439316 DHRS4-AS1Q9P1J3 65 aa10.59□□□□□ -0.71
CLCNKA-203ENST00000439316 SNURFQ9Y675 71 aa10.59□□□□□ -0.71
CLCNKA-203ENST00000439316 DEFB105AQ8NG35 78 aa10.59□□□□□ -0.71
CLCNKA-203ENST00000439316 EPM2AB3EWF7 344 aa10.58□□□□□ -0.72
CLCNKA-203ENST00000439316 BPY2O14599 106 aa10.58□□□□□ -0.72
CLCNKA-203ENST00000439316 SPRR1AP35321 89 aa10.58□□□□□ -0.72
CLCNKA-203ENST00000439316 Q8N9L7 120 aa10.57□□□□□ -0.72
CLCNKA-203ENST00000439316 IGLV1-50A0A075B6I6 118 aa10.57□□□□□ -0.72
CLCNKA-203ENST00000439316 C3orf84H3BNL1 204 aa10.57□□□□□ -0.72
CLCNKA-203ENST00000439316 Q9BRP9 147 aa10.57□□□□□ -0.72
CLCNKA-203ENST00000439316 LINC00588Q9Y4M8 146 aa10.56□□□□□ -0.72
CLCNKA-203ENST00000439316 FAM168BA1KXE4 195 aa10.56□□□□□ -0.72
CLCNKA-203ENST00000439316 RPL37AP8A6NKH3 93 aa10.56□□□□□ -0.72
CLCNKA-203ENST00000439316 CASC10Q5T4H9 136 aa10.56□□□□□ -0.72
CLCNKA-203ENST00000439316 Q5XG85 94 aa10.56□□□□□ -0.72
CLCNKA-203ENST00000439316 SERP1Q9Y6X1 66 aa10.56□□□□□ -0.72
CLCNKA-203ENST00000439316 ERC2-IT1O76042 136 aa10.55□□□□□ -0.72
CLCNKA-203ENST00000439316 TNP2Q05952 138 aa10.55□□□□□ -0.72
CLCNKA-203ENST00000439316 C5orf47Q569G3 176 aa10.55□□□□□ -0.72
CLCNKA-203ENST00000439316 A0A1B0GW54 56 aa10.54□□□□□ -0.72
CLCNKA-203ENST00000439316 F8WEM9 126 aa10.54□□□□□ -0.72
CLCNKA-203ENST00000439316 NDUFC1O43677 76 aa10.54□□□□□ -0.72
CLCNKA-203ENST00000439316 KRTAP7-1Q8IUC3 87 aa10.54□□□□□ -0.72
CLCNKA-203ENST00000439316 ETDCA0A1B0GVM5 59 aa10.54□□□□□ -0.72
CLCNKA-203ENST00000439316 CSMD3Q7Z407 3707 aa10.53□□□□□ -0.72
CLCNKA-203ENST00000439316 TENM2Q9NT68 2774 aa10.52□□□□□ -0.73
CLCNKA-203ENST00000439316 A0A1W2PNM2 257 aa10.52□□□□□ -0.73
CLCNKA-203ENST00000439316 FUSP35637 526 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLCNKA-203ENST00000439316 TMEM254Q8TBM7 123 aa10.51□□□□□ -0.73
CLCNKA-203ENST00000439316 OCR1Q9BZK8 76 aa10.51□□□□□ -0.73
CLCNKA-203ENST00000439316 LYSTQ99698 3801 aa10.5□□□□□ -0.73
CLCNKA-203ENST00000439316 ST20-AS1Q8NBB2 130 aa10.5□□□□□ -0.73
CLCNKA-203ENST00000439316 C1orf137Q5JT78 98 aa10.49□□□□□ -0.73
CLCNKA-203ENST00000439316 DNAH1Q9P2D7 4330 aa10.49□□□□□ -0.73
CLCNKA-203ENST00000439316 C4orf26Q17RF5 130 aa10.48□□□□□ -0.73
CLCNKA-203ENST00000439316 MRPL55Q7Z7F7 128 aaKnown RBP10.48□□□□□ -0.73
CLCNKA-203ENST00000439316 Q8NBF4 154 aa10.48□□□□□ -0.73
CLCNKA-203ENST00000439316 DYNC2H1Q8NCM8 4307 aaKnown RBP10.48□□□□□ -0.73
CLCNKA-203ENST00000439316 FBN3Q75N90 2809 aa10.48□□□□□ -0.73
CLCNKA-203ENST00000439316 DNAH7Q8WXX0 4024 aa10.47□□□□□ -0.73
CLCNKA-203ENST00000439316 ATP5EP56381 51 aaPredicted RBP10.47□□□□□ -0.73
CLCNKA-203ENST00000439316 SPRR4Q96PI1 79 aa10.46□□□□□ -0.74
CLCNKA-203ENST00000439316 A0A0U1RQV1 116 aa10.45□□□□□ -0.74
CLCNKA-203ENST00000439316 PLECQ15149 4684 aaKnown RBP10.44□□□□□ -0.74
CLCNKA-203ENST00000439316 TGP01266 2768 aa10.44□□□□□ -0.74
CLCNKA-203ENST00000439316 UBE2BP63146 152 aa10.43□□□□□ -0.74
CLCNKA-203ENST00000439316 HRCT1Q6UXD1 115 aa10.43□□□□□ -0.74
CLCNKA-203ENST00000439316 REG3GQ6UW15 175 aa10.42□□□□□ -0.74
CLCNKA-203ENST00000439316 SMIM29Q86T20 159 aa10.41□□□□□ -0.74
CLCNKA-203ENST00000439316 STARD9Q9P2P6 4700 aa10.4□□□□□ -0.74
CLCNKA-203ENST00000439316 APLNQ9ULZ1 77 aa10.4□□□□□ -0.74
CLCNKA-203ENST00000439316 SMIM26A0A096LP01 95 aa10.38□□□□□ -0.75
CLCNKA-203ENST00000439316 DSCR10P59022 87 aa10.38□□□□□ -0.75
CLCNKA-203ENST00000439316 LCE6AA0A183 80 aa10.37□□□□□ -0.75
CLCNKA-203ENST00000439316 NUPR2A6NF83 97 aa10.37□□□□□ -0.75
CLCNKA-203ENST00000439316 LINC00476Q8WZB0 136 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms