RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GVQW2A0A096LPI5 108 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 B5MCH6 92 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 GCHFRP30047 84 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 KRTAP1-5Q9BYS1 174 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 IGLV5-48A0A075B6I7 105 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 A0A1B0GUV1 79 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 A0A1W2PNN7 141 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 H3BMG7 143 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 SPATA45Q537H7 98 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 ST20-AS1Q8NBB2 130 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 CYYR1Q96J86 154 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 SLC25A2Q9BXI2 301 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 OSTCQ9NRP0 149 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 RYR1P21817 5038 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 SERF1AO75920 110 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 PRR9Q5T870 116 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 Q5VV11 94 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 KRTAP5-3Q6L8H2 238 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 SND1-IT1Q9HBX3 110 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 TMEM14CQ9P0S9 112 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 PCLOQ9Y6V0 5065 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 NUP210LQ5VU65 1888 aa1.6□□□□□ -2.15
CCDC88A-205ENST00000426576 LINC01546A6NGU7 62 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 ATP6V0CP27449 155 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 A0A1B0GX51 115 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 HCG22E2RYF7 251 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 MP68P56378 58 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 BLOC1S1P78537 153 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 WFDC2Q14508 124 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 SMIM8Q96KF7 97 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 HSPG2P98160 4391 aa1.59□□□□□ -2.15
CCDC88A-205ENST00000426576 MRPL52Q86TS9 123 aaKnown RBP1.59□□□□□ -2.16
CCDC88A-205ENST00000426576 C3orf22Q8N5N4 141 aa1.59□□□□□ -2.16
CCDC88A-205ENST00000426576 SACSQ9NZJ4 4579 aa1.59□□□□□ -2.16
CCDC88A-205ENST00000426576 A0A1B0GW15 77 aa1.59□□□□□ -2.16
CCDC88A-205ENST00000426576 PRR34Q9NV39 138 aa1.59□□□□□ -2.16
CCDC88A-205ENST00000426576 HSPB11Q9Y547 144 aa1.59□□□□□ -2.16
CCDC88A-205ENST00000426576 A0A087WSZ3 146 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 C7orf65Q6ZTY9 151 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 KRTAP5-5Q701N2 237 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 MANBALQ9NQG1 85 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 P0C880 135 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 HSPB8Q9UJY1 196 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 Q8N377 158 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 TCEAL7Q9BRU2 100 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 ENHOQ6UWT2 76 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 C2orf66Q6UXQ4 117 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 MIR7-3HGQ8N6C7 128 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 TMEM229BQ8NBD8 167 aa1.58□□□□□ -2.16
CCDC88A-205ENST00000426576 COL27A1Q8IZC6 1860 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 A0A1W2PRE2 83 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 NDUFB4O95168 129 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 SSBP1Q04837 148 aaKnown RBP1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 OCIAD2Q56VL3 154 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 Q8N9L7 120 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 V9GYH0 126 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 UMAD1C9J7I0 102 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 J3KT08 172 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 FABP4P15090 132 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 C15orf56Q8N910 161 aa1.57□□□□□ -2.16
CCDC88A-205ENST00000426576 C8orf87E5RJ46 101 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 SPANXB1Q9NS25 103 aaPredicted RBP1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 CHTOPQ9Y3Y2 248 aaKnown RBP1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 DSCR10P59022 87 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 BVES-AS1Q5T3Y7 98 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 ATP5L2Q7Z4Y8 100 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 IGKV3D-7A0A0C4DH55 119 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 TRDV1A0A1B0GX56 115 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 KRTAP5-9P26371 169 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 LINC00483Q53H64 154 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 SPINT4Q6UDR6 99 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 SPRR4Q96PI1 79 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 H3BQ85 93 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 S100A6P06703 90 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 SPRR2EP22531 72 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 SPRR2BP35325 72 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 SPRR2AP35326 72 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 CENPWQ5EE01 88 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 KRTAP5-2Q701N4 177 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 Q8IZM0 81 aa1.56□□□□□ -2.16
CCDC88A-205ENST00000426576 COLCA2A8K830 154 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 STAG3L3P0CL85 134 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 KIAA1109Q2LD37 5005 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 H3BQ15 152 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 TLX1NBP0CAT3 122 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 S4R3F8 94 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 A0A1B0GXF2 115 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 COX19Q49B96 90 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 C2orf91Q6ZV80 131 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 ERASQ7Z444 233 aa1.55□□□□□ -2.16
CCDC88A-205ENST00000426576 DAPP51397 102 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 SPRR2FQ96RM1 72 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 HYDINQ4G0P3 5121 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 JMJD7-PLA2G4BH0Y9G9 81 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 M0QZ58 72 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 BTCP35070 178 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 HIST1H4GQ99525 98 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 WDR83OSQ9Y284 106 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 DNHD1Q96M86 4753 aa1.54□□□□□ -2.16
CCDC88A-205ENST00000426576 KLLNB2CW77 178 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms