RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SNURFQ9Y675 71 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 NBPF19A0A087WUL8 3843 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 LRRK2Q5S007 2527 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 Q8NBF4 154 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 IGLV1-50A0A075B6I6 118 aa3.72□□□□□ -1.81
CCDC88A-203ENST00000412148 Q6ZTC4 211 aa3.72□□□□□ -1.81
CCDC88A-203ENST00000412148 C7orf33Q8WU49 177 aa3.72□□□□□ -1.81
CCDC88A-203ENST00000412148 ZCCHC13Q8WW36 166 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-203ENST00000412148 USP24Q9UPU5 2620 aa3.72□□□□□ -1.81
CCDC88A-203ENST00000412148 PTPN13Q12923 2485 aa3.72□□□□□ -1.81
CCDC88A-203ENST00000412148 NKAPP1Q8N9T2 125 aa3.72□□□□□ -1.81
CCDC88A-203ENST00000412148 ACACBO00763 2458 aa3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 IGLV8-61A0A075B6I0 122 aa3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 FAM30AQ9NZY2 134 aa3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 MYO18BQ8IUG5 2567 aa3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 EPG5Q9HCE0 2579 aa3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 KMT2BQ9UMN6 2715 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 A0A1W2PNM2 257 aa3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 ESRGQ1W209 222 aa3.71□□□□□ -1.82
CCDC88A-203ENST00000412148 POLQO75417 2590 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 RPL37AP8A6NKH3 93 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 HTN3P15516 51 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 FLNAP21333 2647 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 SCXQ7RTU7 201 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 Q9BRP9 147 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 CYP4F30PQ9H0H9 118 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 C2CD3Q4AC94 2353 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 ZNF462Q96JM2 2506 aa3.7□□□□□ -1.82
CCDC88A-203ENST00000412148 J3QKU1 62 aa3.69□□□□□ -1.82
CCDC88A-203ENST00000412148 C1orf137Q5JT78 98 aa3.69□□□□□ -1.82
CCDC88A-203ENST00000412148 LINC00336Q6ZUF6 198 aa3.69□□□□□ -1.82
CCDC88A-203ENST00000412148 JMJD1CQ15652 2540 aa3.69□□□□□ -1.82
CCDC88A-203ENST00000412148 NF1P21359 2839 aa3.69□□□□□ -1.82
CCDC88A-203ENST00000412148 CUBNO60494 3623 aa3.68□□□□□ -1.82
CCDC88A-203ENST00000412148 ETDCA0A1B0GVM5 59 aa3.68□□□□□ -1.82
CCDC88A-203ENST00000412148 hDV103S1A0JD37 113 aa3.68□□□□□ -1.82
CCDC88A-203ENST00000412148 DSCR10P59022 87 aa3.68□□□□□ -1.82
CCDC88A-203ENST00000412148 H3BPC8 53 aa3.68□□□□□ -1.82
CCDC88A-203ENST00000412148 NDUFB1O75438 58 aa3.68□□□□□ -1.82
CCDC88A-203ENST00000412148 Q1T7F1 81 aa3.68□□□□□ -1.82
CCDC88A-203ENST00000412148 FAM208BQ5VWN6 2430 aa3.67□□□□□ -1.82
CCDC88A-203ENST00000412148 KRTAP7-1Q8IUC3 87 aa3.67□□□□□ -1.82
CCDC88A-203ENST00000412148 CENPEQ02224 2701 aa3.67□□□□□ -1.82
CCDC88A-203ENST00000412148 IGKV2D-24A0A075B6R9 120 aa3.67□□□□□ -1.82
CCDC88A-203ENST00000412148 MRPL55Q7Z7F7 128 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-203ENST00000412148 SMIM29Q86T20 159 aa3.67□□□□□ -1.82
CCDC88A-203ENST00000412148 LINC00588Q9Y4M8 146 aa3.67□□□□□ -1.82
CCDC88A-203ENST00000412148 C3orf84H3BNL1 204 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 Q8N9L7 120 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 SMR3AQ99954 134 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 ABCA12Q86UK0 2595 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 DEFB131BA0A096LNP1 70 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 H0Y9J4 135 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 SPRR1BP22528 89 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 HIGD2AQ9BW72 106 aa3.66□□□□□ -1.82
CCDC88A-203ENST00000412148 NIPBLQ6KC79 2804 aaeCLIP3.65□□□□□ -1.82
CCDC88A-203ENST00000412148 HCG22E2RYF7 251 aa3.65□□□□□ -1.82
CCDC88A-203ENST00000412148 C11orf45Q8TAV5 145 aa3.65□□□□□ -1.82
CCDC88A-203ENST00000412148 REG3GQ6UW15 175 aa3.65□□□□□ -1.83
CCDC88A-203ENST00000412148 SPANXA2-OT1Q8N9U9 137 aa3.65□□□□□ -1.83
CCDC88A-203ENST00000412148 LINC00474Q9P2X8 69 aa3.65□□□□□ -1.83
CCDC88A-203ENST00000412148 INAFM1C9JVW0 142 aa3.65□□□□□ -1.83
CCDC88A-203ENST00000412148 KRTAP10-11P60412 298 aa3.65□□□□□ -1.83
CCDC88A-203ENST00000412148 FAM229BQ4G0N7 80 aa3.64□□□□□ -1.83
CCDC88A-203ENST00000412148 SONP18583 2426 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-203ENST00000412148 KRTAP29-1A8MX34 341 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-203ENST00000412148 CNBPP62633 177 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-203ENST00000412148 V9GYY9 64 aa3.64□□□□□ -1.83
CCDC88A-203ENST00000412148 GCN1Q92616 2671 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-203ENST00000412148 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-203ENST00000412148 DEFB105AQ8NG35 78 aa3.63□□□□□ -1.83
CCDC88A-203ENST00000412148 LINC00476Q8WZB0 136 aa3.63□□□□□ -1.83
CCDC88A-203ENST00000412148 FN1P02751 2386 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-203ENST00000412148 K7EQZ3 153 aa3.63□□□□□ -1.83
CCDC88A-203ENST00000412148 PKIGQ9Y2B9 76 aa3.63□□□□□ -1.83
CCDC88A-203ENST00000412148 C16orf90A8MZG2 172 aa3.62□□□□□ -1.83
CCDC88A-203ENST00000412148 IGFL1Q6UW32 110 aa3.62□□□□□ -1.83
CCDC88A-203ENST00000412148 PRR15Q8IV56 129 aa3.62□□□□□ -1.83
CCDC88A-203ENST00000412148 ST20-AS1Q8NBB2 130 aa3.62□□□□□ -1.83
CCDC88A-203ENST00000412148 PSCAO43653 123 aa3.62□□□□□ -1.83
CCDC88A-203ENST00000412148 C1orf64Q8NEQ6 169 aa3.62□□□□□ -1.83
CCDC88A-203ENST00000412148 TENM4Q6N022 2769 aa3.61□□□□□ -1.83
CCDC88A-203ENST00000412148 FAM168BA1KXE4 195 aa3.61□□□□□ -1.83
CCDC88A-203ENST00000412148 HIVEP2P31629 2446 aa3.61□□□□□ -1.83
CCDC88A-203ENST00000412148 TRAV22A0A0B4J277 110 aa3.61□□□□□ -1.83
CCDC88A-203ENST00000412148 UBE2BP63146 152 aa3.61□□□□□ -1.83
CCDC88A-203ENST00000412148 Q75L30 129 aa3.61□□□□□ -1.83
CCDC88A-203ENST00000412148 DNAH1Q9P2D7 4330 aa3.6□□□□□ -1.83
CCDC88A-203ENST00000412148 MP68P56378 58 aa3.6□□□□□ -1.83
CCDC88A-203ENST00000412148 C1orf195Q5TG92 126 aa3.6□□□□□ -1.83
CCDC88A-203ENST00000412148 HIVEP1P15822 2718 aa3.6□□□□□ -1.83
CCDC88A-203ENST00000412148 ZFYVE26Q68DK2 2539 aa3.6□□□□□ -1.83
CCDC88A-203ENST00000412148 RPL37AP61513 92 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-203ENST00000412148 LINC00472Q9H8W2 130 aa3.59□□□□□ -1.83
CCDC88A-203ENST00000412148 A8MWP4 228 aa3.59□□□□□ -1.84
CCDC88A-203ENST00000412148 ASB16-AS1Q495Z4 193 aa3.59□□□□□ -1.84
CCDC88A-203ENST00000412148 C14orf177Q52M58 125 aa3.59□□□□□ -1.84
CCDC88A-203ENST00000412148 VWFP04275 2813 aa3.59□□□□□ -1.84
CCDC88A-203ENST00000412148 CASC10Q5T4H9 136 aa3.58□□□□□ -1.84
CCDC88A-203ENST00000412148 BRK1Q8WUW1 75 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms