RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 PLECQ15149 4684 aaKnown RBP12.96□□□□□ -0.34
USP39-204ENST00000409766 MEGF8Q7Z7M0 2845 aa12.96□□□□□ -0.34
USP39-204ENST00000409766 NUPR2A6NF83 97 aa12.95□□□□□ -0.34
USP39-204ENST00000409766 NDUFV3P56181 108 aaKnown RBP12.95□□□□□ -0.34
USP39-204ENST00000409766 PSCAO43653 123 aa12.94□□□□□ -0.34
USP39-204ENST00000409766 GHRHP01286 108 aa12.94□□□□□ -0.34
USP39-204ENST00000409766 IGLV1-50A0A075B6I6 118 aa12.93□□□□□ -0.34
USP39-204ENST00000409766 PRKDCP78527 4128 aaKnown RBP12.93□□□□□ -0.34
USP39-204ENST00000409766 LOC110117498A0A087WWA1 95 aa12.93□□□□□ -0.34
USP39-204ENST00000409766 CNBPP62633 177 aaKnown RBP12.93□□□□□ -0.34
USP39-204ENST00000409766 Q6ZQT0 140 aa12.93□□□□□ -0.34
USP39-204ENST00000409766 RPL37AP8A6NKH3 93 aa12.92□□□□□ -0.34
USP39-204ENST00000409766 ANAPC13Q9BS18 74 aa12.91□□□□□ -0.34
USP39-204ENST00000409766 KRTAP4-16G5E9R7 235 aaPredicted RBP12.89□□□□□ -0.35
USP39-204ENST00000409766 PRYO14603 147 aa12.89□□□□□ -0.35
USP39-204ENST00000409766 FAM19A5Q7Z5A7 132 aaPredicted RBP12.89□□□□□ -0.35
USP39-204ENST00000409766 SPRR1AP35321 89 aa12.89□□□□□ -0.35
USP39-204ENST00000409766 MRPL55Q7Z7F7 128 aaKnown RBP12.89□□□□□ -0.35
USP39-204ENST00000409766 DSCR8Q96T75 97 aa12.88□□□□□ -0.35
USP39-204ENST00000409766 Q6JHZ5 121 aa12.88□□□□□ -0.35
USP39-204ENST00000409766 NBDYA0A0U1RRE5 68 aa12.86□□□□□ -0.35
USP39-204ENST00000409766 Q6ZRX8 168 aa12.86□□□□□ -0.35
USP39-204ENST00000409766 C16orf90A8MZG2 172 aa12.86□□□□□ -0.35
USP39-204ENST00000409766 B5MCH6 92 aa12.86□□□□□ -0.35
USP39-204ENST00000409766 C14orf177Q52M58 125 aa12.86□□□□□ -0.35
USP39-204ENST00000409766 A0A096LNI7 61 aa12.85□□□□□ -0.35
USP39-204ENST00000409766 PDE6GP18545 87 aa12.85□□□□□ -0.35
USP39-204ENST00000409766 STARD9Q9P2P6 4700 aa12.85□□□□□ -0.35
USP39-204ENST00000409766 TRBV7-4A0A0J9YYF1 115 aa12.84□□□□□ -0.35
USP39-204ENST00000409766 IGKV3D-7A0A0C4DH55 119 aa12.83□□□□□ -0.36
USP39-204ENST00000409766 M0R2N4 97 aa12.83□□□□□ -0.36
USP39-204ENST00000409766 Q9BRP9 147 aa12.83□□□□□ -0.36
USP39-204ENST00000409766 DHRS4-AS1Q9P1J3 65 aa12.83□□□□□ -0.36
USP39-204ENST00000409766 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.82□□□□□ -0.36
USP39-204ENST00000409766 FAM236AA0A1B0GUQ0 79 aa12.82□□□□□ -0.36
USP39-204ENST00000409766 FAM236BA0A1B0GV22 79 aa12.82□□□□□ -0.36
USP39-204ENST00000409766 ETDCA0A1B0GVM5 59 aa12.82□□□□□ -0.36
USP39-204ENST00000409766 LRCOL1A6NCL2 159 aa12.81□□□□□ -0.36
USP39-204ENST00000409766 IGKV2-24A0A0C4DH68 120 aa12.8□□□□□ -0.36
USP39-204ENST00000409766 Q6ZRN7 208 aaPredicted RBP12.8□□□□□ -0.36
USP39-204ENST00000409766 VPS13DQ5THJ4 4388 aa12.79□□□□□ -0.36
USP39-204ENST00000409766 Q8N377 158 aa12.79□□□□□ -0.36
USP39-204ENST00000409766 UBL5Q9BZL1 73 aa12.79□□□□□ -0.36
USP39-204ENST00000409766 A0A1W2PNN7 141 aa12.78□□□□□ -0.36
USP39-204ENST00000409766 LINC01547P58512 204 aaPredicted RBP12.78□□□□□ -0.36
USP39-204ENST00000409766 REG3GQ6UW15 175 aa12.77□□□□□ -0.37
USP39-204ENST00000409766 DEFB105AQ8NG35 78 aa12.76□□□□□ -0.37
USP39-204ENST00000409766 ATP5EP2Q5VTU8 51 aa12.75□□□□□ -0.37
USP39-204ENST00000409766 C9orf163Q8N9P6 203 aa12.74□□□□□ -0.37
USP39-204ENST00000409766 HIST1H4AP62805 103 aaKnown RBP12.73□□□□□ -0.37
USP39-204ENST00000409766 IGLV5-48A0A075B6I7 105 aa12.71□□□□□ -0.37
USP39-204ENST00000409766 ERC2-IT1O76042 136 aa12.71□□□□□ -0.37
USP39-204ENST00000409766 CHTF8P0CG12 524 aa12.71□□□□□ -0.37
USP39-204ENST00000409766 Q6ZVQ6 151 aa12.71□□□□□ -0.38
USP39-204ENST00000409766 ST20-AS1Q8NBB2 130 aa12.71□□□□□ -0.38
USP39-204ENST00000409766 UBE2BP63146 152 aa12.7□□□□□ -0.38
USP39-204ENST00000409766 FBN3Q75N90 2809 aa12.69□□□□□ -0.38
USP39-204ENST00000409766 A0A087WVE0 104 aa12.69□□□□□ -0.38
USP39-204ENST00000409766 CCDC179H3BU77 68 aa12.67□□□□□ -0.38
USP39-204ENST00000409766 C3orf22Q8N5N4 141 aa12.67□□□□□ -0.38
USP39-204ENST00000409766 PKIGQ9Y2B9 76 aa12.67□□□□□ -0.38
USP39-204ENST00000409766 TNP2Q05952 138 aa12.64□□□□□ -0.39
USP39-204ENST00000409766 PHF5AQ7RTV0 110 aaKnown RBP12.64□□□□□ -0.39
USP39-204ENST00000409766 FAM19A1Q7Z5A9 133 aa12.63□□□□□ -0.39
USP39-204ENST00000409766 KRTAP11-1Q8IUC1 163 aa12.63□□□□□ -0.39
USP39-204ENST00000409766 HAMPP81172 84 aa12.62□□□□□ -0.39
USP39-204ENST00000409766 LINC00474Q9P2X8 69 aa12.62□□□□□ -0.39
USP39-204ENST00000409766 PRLHP81277 87 aa12.62□□□□□ -0.39
USP39-204ENST00000409766 ATOX1O00244 68 aa12.61□□□□□ -0.39
USP39-204ENST00000409766 Q6ZR54 194 aa12.61□□□□□ -0.39
USP39-204ENST00000409766 KMT2AQ03164 3969 aa12.61□□□□□ -0.39
USP39-204ENST00000409766 A0A087WTM6 91 aa12.6□□□□□ -0.39
USP39-204ENST00000409766 PANO1I0J062 215 aa12.6□□□□□ -0.39
USP39-204ENST00000409766 CXCL6P80162 114 aa12.6□□□□□ -0.39
USP39-204ENST00000409766 SMIM29Q86T20 159 aa12.57□□□□□ -0.4
USP39-204ENST00000409766 C1orf137Q5JT78 98 aa12.56□□□□□ -0.4
USP39-204ENST00000409766 DNAH2Q9P225 4427 aa12.56□□□□□ -0.4
USP39-204ENST00000409766 H0Y9J4 135 aa12.55□□□□□ -0.4
USP39-204ENST00000409766 HIGD2AQ9BW72 106 aa12.55□□□□□ -0.4
USP39-204ENST00000409766 A0A1W2PNM2 257 aa12.54□□□□□ -0.4
USP39-204ENST00000409766 HECTD4Q9Y4D8 3996 aa12.54□□□□□ -0.4
USP39-204ENST00000409766 C3orf84H3BNL1 204 aa12.54□□□□□ -0.4
USP39-204ENST00000409766 SPACA4Q8TDM5 124 aa12.54□□□□□ -0.4
USP39-204ENST00000409766 A0A1B0GW54 56 aa12.53□□□□□ -0.4
USP39-204ENST00000409766 UQCRQO14949 82 aa12.53□□□□□ -0.4
USP39-204ENST00000409766 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.53□□□□□ -0.4
USP39-204ENST00000409766 EPM2AB3EWF7 344 aa12.52□□□□□ -0.4
USP39-204ENST00000409766 FUSP35637 526 aaKnown RBP eCLIP12.52□□□□□ -0.4
USP39-204ENST00000409766 TGP01266 2768 aa12.52□□□□□ -0.41
USP39-204ENST00000409766 COX7CP15954 63 aa12.52□□□□□ -0.41
USP39-204ENST00000409766 NREPQ16612 68 aa12.51□□□□□ -0.41
USP39-204ENST00000409766 DPH3Q96FX2 82 aa12.51□□□□□ -0.41
USP39-204ENST00000409766 SCXQ7RTU7 201 aa12.5□□□□□ -0.41
USP39-204ENST00000409766 Q8NBF4 154 aa12.5□□□□□ -0.41
USP39-204ENST00000409766 SPRR4Q96PI1 79 aa12.49□□□□□ -0.41
USP39-204ENST00000409766 SRRM2Q9UQ35 2752 aaKnown RBP12.48□□□□□ -0.41
USP39-204ENST00000409766 RTL8CO15255 209 aa12.48□□□□□ -0.41
USP39-204ENST00000409766 F8WEM9 126 aa12.47□□□□□ -0.41
USP39-204ENST00000409766 SERP2Q8N6R1 65 aa12.47□□□□□ -0.41
USP39-204ENST00000409766 LINC00476Q8WZB0 136 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms