RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 VPREB1P12018 145 aa11.78□□□□□ -0.52
CCDC88C-203ENST00000389856 NKAPP1Q8N9T2 125 aa11.78□□□□□ -0.52
CCDC88C-203ENST00000389856 DNAH1Q9P2D7 4330 aa11.77□□□□□ -0.52
CCDC88C-203ENST00000389856 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-203ENST00000389856 CCKP06307 115 aa11.76□□□□□ -0.53
CCDC88C-203ENST00000389856 SMCR5Q8TEV8 140 aa11.76□□□□□ -0.53
CCDC88C-203ENST00000389856 TRBV10-3A0A0K0K1G6 114 aa11.75□□□□□ -0.53
CCDC88C-203ENST00000389856 C9orf129Q5T035 196 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-203ENST00000389856 A0A087WTM6 91 aa11.74□□□□□ -0.53
CCDC88C-203ENST00000389856 C16orf90A8MZG2 172 aa11.73□□□□□ -0.53
CCDC88C-203ENST00000389856 ZNF73O43830 326 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-203ENST00000389856 LYSTQ99698 3801 aa11.73□□□□□ -0.53
CCDC88C-203ENST00000389856 IGLV5-37A0A075B6J1 123 aa11.72□□□□□ -0.53
CCDC88C-203ENST00000389856 COX7BP24311 80 aa11.72□□□□□ -0.53
CCDC88C-203ENST00000389856 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-203ENST00000389856 C9orf163Q8N9P6 203 aa11.72□□□□□ -0.53
CCDC88C-203ENST00000389856 VPS13DQ5THJ4 4388 aa11.72□□□□□ -0.53
CCDC88C-203ENST00000389856 Q6JHZ5 121 aa11.71□□□□□ -0.53
CCDC88C-203ENST00000389856 LINC00474Q9P2X8 69 aa11.71□□□□□ -0.53
CCDC88C-203ENST00000389856 PDE6GP18545 87 aa11.71□□□□□ -0.54
CCDC88C-203ENST00000389856 ELOF1P60002 83 aaKnown RBP11.71□□□□□ -0.54
CCDC88C-203ENST00000389856 LOC110117498A0A087WWA1 95 aa11.68□□□□□ -0.54
CCDC88C-203ENST00000389856 RBM3P98179 157 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-203ENST00000389856 ATP5EP2Q5VTU8 51 aa11.67□□□□□ -0.54
CCDC88C-203ENST00000389856 LINC00846Q9NV44 126 aa11.67□□□□□ -0.54
CCDC88C-203ENST00000389856 A0A096LNI7 61 aa11.66□□□□□ -0.54
CCDC88C-203ENST00000389856 SERTAD4-AS1Q5TG53 156 aa11.66□□□□□ -0.54
CCDC88C-203ENST00000389856 Q6ZQY7 126 aa11.65□□□□□ -0.54
CCDC88C-203ENST00000389856 IGKV2-24A0A0C4DH68 120 aa11.64□□□□□ -0.55
CCDC88C-203ENST00000389856 C7orf33Q8WU49 177 aa11.64□□□□□ -0.55
CCDC88C-203ENST00000389856 FAM19A5Q7Z5A7 132 aaPredicted RBP11.64□□□□□ -0.55
CCDC88C-203ENST00000389856 LAMTOR3Q9UHA4 124 aa11.64□□□□□ -0.55
CCDC88C-203ENST00000389856 MRPL55Q7Z7F7 128 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-203ENST00000389856 KCNQ1DNQ9H478 68 aa11.62□□□□□ -0.55
CCDC88C-203ENST00000389856 FAM236AA0A1B0GUQ0 79 aa11.61□□□□□ -0.55
CCDC88C-203ENST00000389856 FAM236BA0A1B0GV22 79 aa11.61□□□□□ -0.55
CCDC88C-203ENST00000389856 PRYO14603 147 aa11.61□□□□□ -0.55
CCDC88C-203ENST00000389856 RTL8CO15255 209 aa11.61□□□□□ -0.55
CCDC88C-203ENST00000389856 Q6ZQT0 140 aa11.61□□□□□ -0.55
CCDC88C-203ENST00000389856 LINC00528Q8N1L1 170 aa11.61□□□□□ -0.55
CCDC88C-203ENST00000389856 ALMS1Q8TCU4 4167 aa11.61□□□□□ -0.55
CCDC88C-203ENST00000389856 FAM168BA1KXE4 195 aa11.6□□□□□ -0.55
CCDC88C-203ENST00000389856 DSCR8Q96T75 97 aa11.6□□□□□ -0.55
CCDC88C-203ENST00000389856 IGLV5-52A0A0A0MRZ9 124 aa11.6□□□□□ -0.55
CCDC88C-203ENST00000389856 UBL5Q9BZL1 73 aa11.59□□□□□ -0.55
CCDC88C-203ENST00000389856 IGLV1-50A0A075B6I6 118 aa11.58□□□□□ -0.56
CCDC88C-203ENST00000389856 HIST1H4AP62805 103 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-203ENST00000389856 LCE6AA0A183 80 aa11.56□□□□□ -0.56
CCDC88C-203ENST00000389856 DPH3Q96FX2 82 aa11.56□□□□□ -0.56
CCDC88C-203ENST00000389856 DNAH6Q9C0G6 4158 aa11.56□□□□□ -0.56
CCDC88C-203ENST00000389856 ATOX1O00244 68 aa11.55□□□□□ -0.56
CCDC88C-203ENST00000389856 TNP2Q05952 138 aa11.55□□□□□ -0.56
CCDC88C-203ENST00000389856 DNAH10Q8IVF4 4471 aa11.54□□□□□ -0.56
CCDC88C-203ENST00000389856 CHTF8P0CG12 524 aa11.53□□□□□ -0.56
CCDC88C-203ENST00000389856 KRTAP7-1Q8IUC3 87 aa11.53□□□□□ -0.56
CCDC88C-203ENST00000389856 TRBV7-4A0A0J9YYF1 115 aa11.53□□□□□ -0.56
CCDC88C-203ENST00000389856 ETDCA0A1B0GVM5 59 aa11.53□□□□□ -0.56
CCDC88C-203ENST00000389856 A0A1W2PNN7 141 aa11.53□□□□□ -0.56
CCDC88C-203ENST00000389856 RPL37AP8A6NKH3 93 aa11.53□□□□□ -0.56
CCDC88C-203ENST00000389856 DHRS4-AS1Q9P1J3 65 aa11.53□□□□□ -0.56
CCDC88C-203ENST00000389856 IGKV3D-7A0A0C4DH55 119 aa11.52□□□□□ -0.57
CCDC88C-203ENST00000389856 SPACA4Q8TDM5 124 aa11.52□□□□□ -0.57
CCDC88C-203ENST00000389856 REG3GQ6UW15 175 aa11.51□□□□□ -0.57
CCDC88C-203ENST00000389856 CCDC179H3BU77 68 aa11.5□□□□□ -0.57
CCDC88C-203ENST00000389856 SPRR1AP35321 89 aa11.5□□□□□ -0.57
CCDC88C-203ENST00000389856 UBE2BP63146 152 aa11.5□□□□□ -0.57
CCDC88C-203ENST00000389856 KMT2CQ8NEZ4 4911 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-203ENST00000389856 UQCRQO14949 82 aa11.48□□□□□ -0.57
CCDC88C-203ENST00000389856 Q6ZRX8 168 aa11.46□□□□□ -0.57
CCDC88C-203ENST00000389856 LINC00336Q6ZUF6 198 aa11.46□□□□□ -0.57
CCDC88C-203ENST00000389856 KMT2AQ03164 3969 aa11.46□□□□□ -0.58
CCDC88C-203ENST00000389856 B5MCH6 92 aa11.46□□□□□ -0.58
CCDC88C-203ENST00000389856 KRTAP4-16G5E9R7 235 aaPredicted RBP11.46□□□□□ -0.58
CCDC88C-203ENST00000389856 C3orf22Q8N5N4 141 aa11.46□□□□□ -0.58
CCDC88C-203ENST00000389856 EPM2AB3EWF7 344 aa11.45□□□□□ -0.58
CCDC88C-203ENST00000389856 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-203ENST00000389856 PHF5AQ7RTV0 110 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-203ENST00000389856 COX7CP15954 63 aa11.43□□□□□ -0.58
CCDC88C-203ENST00000389856 CXCL6P80162 114 aa11.43□□□□□ -0.58
CCDC88C-203ENST00000389856 A0A1B0GW54 56 aa11.42□□□□□ -0.58
CCDC88C-203ENST00000389856 BCE1O60756 84 aa11.42□□□□□ -0.58
CCDC88C-203ENST00000389856 Q6ZVQ6 151 aa11.42□□□□□ -0.58
CCDC88C-203ENST00000389856 PLAC8Q9NZF1 115 aa11.42□□□□□ -0.58
CCDC88C-203ENST00000389856 PANO1I0J062 215 aa11.41□□□□□ -0.58
CCDC88C-203ENST00000389856 FUSP35637 526 aaKnown RBP eCLIP11.39□□□□□ -0.59
CCDC88C-203ENST00000389856 FAM19A1Q7Z5A9 133 aa11.39□□□□□ -0.59
CCDC88C-203ENST00000389856 DNAH2Q9P225 4427 aa11.39□□□□□ -0.59
CCDC88C-203ENST00000389856 IGLV5-48A0A075B6I7 105 aa11.38□□□□□ -0.59
CCDC88C-203ENST00000389856 LINC01547P58512 204 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-203ENST00000389856 KRTAP10-2P60368 255 aa11.38□□□□□ -0.59
CCDC88C-203ENST00000389856 SERP2Q8N6R1 65 aa11.38□□□□□ -0.59
CCDC88C-203ENST00000389856 H0Y9J4 135 aa11.38□□□□□ -0.59
CCDC88C-203ENST00000389856 C9orf153Q5TBE3 101 aa11.37□□□□□ -0.59
CCDC88C-203ENST00000389856 Q8N377 158 aa11.37□□□□□ -0.59
CCDC88C-203ENST00000389856 A0A087WVE0 104 aa11.36□□□□□ -0.59
CCDC88C-203ENST00000389856 RYR3Q15413 4870 aa11.36□□□□□ -0.59
CCDC88C-203ENST00000389856 Q9BRP9 147 aa11.35□□□□□ -0.59
CCDC88C-203ENST00000389856 DNAH17Q9UFH2 4485 aa11.35□□□□□ -0.59
CCDC88C-203ENST00000389856 CRYGAP11844 174 aa11.35□□□□□ -0.59
CCDC88C-203ENST00000389856 HAMPP81172 84 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms