RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 FAM19A5Q7Z5A7 132 aaPredicted RBP16.15■□□□□ 0.18
SHOX2-201ENST00000389589 C14orf132Q9NPU4 83 aa16.15■□□□□ 0.18
SHOX2-201ENST00000389589 PKIGQ9Y2B9 76 aa16.15■□□□□ 0.18
SHOX2-201ENST00000389589 MRPL55Q7Z7F7 128 aaKnown RBP16.15■□□□□ 0.18
SHOX2-201ENST00000389589 A0A096LNI7 61 aa16.14■□□□□ 0.17
SHOX2-201ENST00000389589 M0R2N4 97 aa16.12■□□□□ 0.17
SHOX2-201ENST00000389589 MT-ATP8P03928 68 aa16.12■□□□□ 0.17
SHOX2-201ENST00000389589 GAGE2AQ6NT46 116 aa16.12■□□□□ 0.17
SHOX2-201ENST00000389589 RPL37AP8A6NKH3 93 aa16.11■□□□□ 0.17
SHOX2-201ENST00000389589 C9orf163Q8N9P6 203 aa16.1■□□□□ 0.17
SHOX2-201ENST00000389589 PCP4P48539 62 aa16.09■□□□□ 0.17
SHOX2-201ENST00000389589 SCGB1A1P11684 91 aa16.09■□□□□ 0.17
SHOX2-201ENST00000389589 SPRR1AP35321 89 aa16.09■□□□□ 0.17
SHOX2-201ENST00000389589 IGKV2-24A0A0C4DH68 120 aa16.08■□□□□ 0.16
SHOX2-201ENST00000389589 Q6ZR54 194 aa16.06■□□□□ 0.16
SHOX2-201ENST00000389589 LAMTOR3Q9UHA4 124 aa16.06■□□□□ 0.16
SHOX2-201ENST00000389589 KRTAP4-16G5E9R7 235 aaPredicted RBP16.06■□□□□ 0.16
SHOX2-201ENST00000389589 A0A1B0GV72 72 aa16.05■□□□□ 0.16
SHOX2-201ENST00000389589 ETDCA0A1B0GVM5 59 aa16.04■□□□□ 0.16
SHOX2-201ENST00000389589 DHRS4-AS1Q9P1J3 65 aa16.04■□□□□ 0.16
SHOX2-201ENST00000389589 Q6ZRX8 168 aa16.04■□□□□ 0.16
SHOX2-201ENST00000389589 B5MCH6 92 aa16.03■□□□□ 0.16
SHOX2-201ENST00000389589 CCKP06307 115 aa16.03■□□□□ 0.16
SHOX2-201ENST00000389589 RBM3P98179 157 aaKnown RBP16.03■□□□□ 0.16
SHOX2-201ENST00000389589 FBN3Q75N90 2809 aa16.03■□□□□ 0.16
SHOX2-201ENST00000389589 SDIM1Q6ZPB5 146 aa16.02■□□□□ 0.15
SHOX2-201ENST00000389589 A0A1W2PNN7 141 aa16.01■□□□□ 0.15
SHOX2-201ENST00000389589 LINC00474Q9P2X8 69 aa16■□□□□ 0.15
SHOX2-201ENST00000389589 REG3GQ6UW15 175 aa15.99■□□□□ 0.15
SHOX2-201ENST00000389589 WWC2-AS2Q96NR7 200 aa15.99■□□□□ 0.15
SHOX2-201ENST00000389589 A0A087WTM6 91 aa15.99■□□□□ 0.15
SHOX2-201ENST00000389589 LOC110117498A0A087WWA1 95 aa15.97■□□□□ 0.15
SHOX2-201ENST00000389589 LINC00643Q86TS7 51 aa15.96■□□□□ 0.15
SHOX2-201ENST00000389589 SMCR5Q8TEV8 140 aa15.96■□□□□ 0.15
SHOX2-201ENST00000389589 CHTF8P0CG12 524 aa15.95■□□□□ 0.14
SHOX2-201ENST00000389589 PDE6GP18545 87 aa15.95■□□□□ 0.14
SHOX2-201ENST00000389589 DSCR8Q96T75 97 aa15.95■□□□□ 0.14
SHOX2-201ENST00000389589 NDUFV3P56181 108 aaKnown RBP15.94■□□□□ 0.14
SHOX2-201ENST00000389589 Q9BRP9 147 aa15.94■□□□□ 0.14
SHOX2-201ENST00000389589 Q6ZQT0 140 aa15.93■□□□□ 0.14
SHOX2-201ENST00000389589 LY6G6CO95867 125 aa15.92■□□□□ 0.14
SHOX2-201ENST00000389589 C1orf134Q5TEV5 83 aa15.91■□□□□ 0.14
SHOX2-201ENST00000389589 Q6Q795 121 aa15.91■□□□□ 0.14
SHOX2-201ENST00000389589 LINC00846Q9NV44 126 aa15.9■□□□□ 0.14
SHOX2-201ENST00000389589 UBE2BP63146 152 aa15.88■□□□□ 0.13
SHOX2-201ENST00000389589 C21orf62-AS1Q17RA5 79 aa15.87■□□□□ 0.13
SHOX2-201ENST00000389589 LINC00476Q8WZB0 136 aa15.87■□□□□ 0.13
SHOX2-201ENST00000389589 TRBV7-7A0A0K0K1E9 115 aa15.87■□□□□ 0.13
SHOX2-201ENST00000389589 DNAH6Q9C0G6 4158 aa15.86■□□□□ 0.13
SHOX2-201ENST00000389589 KMT2AQ03164 3969 aa15.86■□□□□ 0.13
SHOX2-201ENST00000389589 PHF5AQ7RTV0 110 aaKnown RBP15.86■□□□□ 0.13
SHOX2-201ENST00000389589 Q8N377 158 aa15.86■□□□□ 0.13
SHOX2-201ENST00000389589 TRBV7-4A0A0J9YYF1 115 aa15.85■□□□□ 0.13
SHOX2-201ENST00000389589 DEFB105AQ8NG35 78 aa15.85■□□□□ 0.13
SHOX2-201ENST00000389589 LINC01547P58512 204 aaPredicted RBP15.85■□□□□ 0.13
SHOX2-201ENST00000389589 TGP01266 2768 aa15.84■□□□□ 0.13
SHOX2-201ENST00000389589 IMUPQ9GZP8 106 aa15.83■□□□□ 0.13
SHOX2-201ENST00000389589 IGLV5-48A0A075B6I7 105 aa15.83■□□□□ 0.12
SHOX2-201ENST00000389589 FAM19A1Q7Z5A9 133 aa15.83■□□□□ 0.12
SHOX2-201ENST00000389589 RTL8CO15255 209 aa15.82■□□□□ 0.12
SHOX2-201ENST00000389589 SPACA4Q8TDM5 124 aa15.82■□□□□ 0.12
SHOX2-201ENST00000389589 C3orf84H3BNL1 204 aa15.81■□□□□ 0.12
SHOX2-201ENST00000389589 DPH3Q96FX2 82 aa15.81■□□□□ 0.12
SHOX2-201ENST00000389589 PANO1I0J062 215 aa15.8■□□□□ 0.12
SHOX2-201ENST00000389589 ERC2-IT1O76042 136 aa15.79■□□□□ 0.12
SHOX2-201ENST00000389589 DNAH2Q9P225 4427 aa15.79■□□□□ 0.12
SHOX2-201ENST00000389589 Q6JHZ5 121 aa15.79■□□□□ 0.12
SHOX2-201ENST00000389589 EPM2AB3EWF7 344 aa15.78■□□□□ 0.12
SHOX2-201ENST00000389589 ST20-AS1Q8NBB2 130 aa15.78■□□□□ 0.12
SHOX2-201ENST00000389589 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.77■□□□□ 0.11
SHOX2-201ENST00000389589 H0Y9J4 135 aa15.76■□□□□ 0.11
SHOX2-201ENST00000389589 UBL5Q9BZL1 73 aa15.76■□□□□ 0.11
SHOX2-201ENST00000389589 ALMS1Q8TCU4 4167 aa15.76■□□□□ 0.11
SHOX2-201ENST00000389589 HECTD4Q9Y4D8 3996 aa15.76■□□□□ 0.11
SHOX2-201ENST00000389589 PRLHP81277 87 aa15.75■□□□□ 0.11
SHOX2-201ENST00000389589 KRTAP11-1Q8IUC1 163 aa15.75■□□□□ 0.11
SHOX2-201ENST00000389589 DNAH17Q9UFH2 4485 aa15.74■□□□□ 0.11
SHOX2-201ENST00000389589 IGLV5-52A0A0A0MRZ9 124 aa15.73■□□□□ 0.11
SHOX2-201ENST00000389589 ATP5EP2Q5VTU8 51 aa15.7■□□□□ 0.1
SHOX2-201ENST00000389589 FUSP35637 526 aaKnown RBP eCLIP15.69■□□□□ 0.1
SHOX2-201ENST00000389589 HIGD2AQ9BW72 106 aa15.69■□□□□ 0.1
SHOX2-201ENST00000389589 TNP2Q05952 138 aa15.68■□□□□ 0.1
SHOX2-201ENST00000389589 C3orf22Q8N5N4 141 aa15.68■□□□□ 0.1
SHOX2-201ENST00000389589 BCE1O60756 84 aa15.67■□□□□ 0.1
SHOX2-201ENST00000389589 IGKV3D-7A0A0C4DH55 119 aa15.66■□□□□ 0.1
SHOX2-201ENST00000389589 UBE2AP49459 152 aa15.66■□□□□ 0.1
SHOX2-201ENST00000389589 PLAC8Q9NZF1 115 aa15.64■□□□□ 0.09
SHOX2-201ENST00000389589 SMIM29Q86T20 159 aa15.63■□□□□ 0.09
SHOX2-201ENST00000389589 Q6ZVQ6 151 aa15.62■□□□□ 0.09
SHOX2-201ENST00000389589 F8WEM9 126 aa15.61■□□□□ 0.09
SHOX2-201ENST00000389589 C1orf137Q5JT78 98 aa15.6■□□□□ 0.09
SHOX2-201ENST00000389589 A0A1B0GW54 56 aa15.59■□□□□ 0.09
SHOX2-201ENST00000389589 ANAPC13Q9BS18 74 aa15.59■□□□□ 0.09
SHOX2-201ENST00000389589 KRTAP13-1Q8IUC0 172 aa15.59■□□□□ 0.09
SHOX2-201ENST00000389589 FAM236AA0A1B0GUQ0 79 aa15.57■□□□□ 0.08
SHOX2-201ENST00000389589 FAM236BA0A1B0GV22 79 aa15.57■□□□□ 0.08
SHOX2-201ENST00000389589 FRAS1Q86XX4 4008 aa15.56■□□□□ 0.08
SHOX2-201ENST00000389589 SPRR1BP22528 89 aa15.56■□□□□ 0.08
SHOX2-201ENST00000389589 HAMPP81172 84 aa15.53■□□□□ 0.08
SHOX2-201ENST00000389589 IGLV8-61A0A075B6I0 122 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms