RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 SYCNQ0VAF6 134 aa12.79□□□□□ -0.36
SHROOM1-202ENST00000378676 MRAPQ8TCY5 172 aa12.79□□□□□ -0.36
SHROOM1-202ENST00000378676 LINC01547P58512 204 aaPredicted RBP12.78□□□□□ -0.36
SHROOM1-202ENST00000378676 COL6A5A8TX70 2615 aa12.77□□□□□ -0.36
SHROOM1-202ENST00000378676 FAM236DA0A1B0GTK5 79 aa12.77□□□□□ -0.37
SHROOM1-202ENST00000378676 EPM2AB3EWF7 344 aa12.77□□□□□ -0.37
SHROOM1-202ENST00000378676 FAM236CP0DP71 79 aa12.77□□□□□ -0.37
SHROOM1-202ENST00000378676 PDE6GP18545 87 aa12.77□□□□□ -0.37
SHROOM1-202ENST00000378676 SERTAD4-AS1Q5TG53 156 aa12.76□□□□□ -0.37
SHROOM1-202ENST00000378676 HAMPP81172 84 aa12.76□□□□□ -0.37
SHROOM1-202ENST00000378676 DNAH10OSP0CZ25 163 aa12.75□□□□□ -0.37
SHROOM1-202ENST00000378676 NOTCH1P46531 2555 aa12.74□□□□□ -0.37
SHROOM1-202ENST00000378676 C20orf197Q8N268 126 aa12.74□□□□□ -0.37
SHROOM1-202ENST00000378676 SERP1Q9Y6X1 66 aa12.73□□□□□ -0.37
SHROOM1-202ENST00000378676 F8WDY8 70 aa12.73□□□□□ -0.37
SHROOM1-202ENST00000378676 CASC10Q5T4H9 136 aa12.72□□□□□ -0.37
SHROOM1-202ENST00000378676 C7orf33Q8WU49 177 aa12.71□□□□□ -0.37
SHROOM1-202ENST00000378676 TRAV7A0A075B6U4 112 aa12.71□□□□□ -0.38
SHROOM1-202ENST00000378676 NKAPP1Q8N9T2 125 aa12.7□□□□□ -0.38
SHROOM1-202ENST00000378676 LINC00588Q9Y4M8 146 aa12.7□□□□□ -0.38
SHROOM1-202ENST00000378676 PRB2P02812 416 aaPredicted RBP12.69□□□□□ -0.38
SHROOM1-202ENST00000378676 DNAH1Q9P2D7 4330 aa12.69□□□□□ -0.38
SHROOM1-202ENST00000378676 SCXQ7RTU7 201 aa12.69□□□□□ -0.38
SHROOM1-202ENST00000378676 KCNQ1DNQ9H478 68 aa12.69□□□□□ -0.38
SHROOM1-202ENST00000378676 H7BZZ5 65 aa12.68□□□□□ -0.38
SHROOM1-202ENST00000378676 CXCL6P80162 114 aa12.67□□□□□ -0.38
SHROOM1-202ENST00000378676 TRAV10A0A0B4J240 114 aa12.66□□□□□ -0.38
SHROOM1-202ENST00000378676 FAM168BA1KXE4 195 aa12.66□□□□□ -0.38
SHROOM1-202ENST00000378676 KLKP1Q107X0 134 aa12.66□□□□□ -0.38
SHROOM1-202ENST00000378676 TLX1NBP0CAT3 122 aa12.65□□□□□ -0.38
SHROOM1-202ENST00000378676 PRO0628Q9UI54 55 aa12.64□□□□□ -0.39
SHROOM1-202ENST00000378676 RPL37AP8A6NKH3 93 aa12.63□□□□□ -0.39
SHROOM1-202ENST00000378676 DEFB105AQ8NG35 78 aa12.62□□□□□ -0.39
SHROOM1-202ENST00000378676 NBEAL1Q6ZS30 2694 aa12.61□□□□□ -0.39
SHROOM1-202ENST00000378676 KRTAP7-1Q8IUC3 87 aa12.61□□□□□ -0.39
SHROOM1-202ENST00000378676 Q8N377 158 aa12.61□□□□□ -0.39
SHROOM1-202ENST00000378676 HUWE1Q7Z6Z7 4374 aaKnown RBP12.61□□□□□ -0.39
SHROOM1-202ENST00000378676 PLA2G2DQ9UNK4 145 aa12.61□□□□□ -0.39
SHROOM1-202ENST00000378676 SMIM26A0A096LP01 95 aa12.58□□□□□ -0.4
SHROOM1-202ENST00000378676 KRTAP4-16G5E9R7 235 aaPredicted RBP12.58□□□□□ -0.4
SHROOM1-202ENST00000378676 Q9BRP9 147 aa12.58□□□□□ -0.4
SHROOM1-202ENST00000378676 TM2D3Q9BRN9 247 aa12.58□□□□□ -0.4
SHROOM1-202ENST00000378676 IGLV5-37A0A075B6J1 123 aa12.57□□□□□ -0.4
SHROOM1-202ENST00000378676 Q6ZRX8 168 aa12.57□□□□□ -0.4
SHROOM1-202ENST00000378676 IGLV1-50A0A075B6I6 118 aa12.57□□□□□ -0.4
SHROOM1-202ENST00000378676 PRYO14603 147 aa12.56□□□□□ -0.4
SHROOM1-202ENST00000378676 NDUFC1O43677 76 aa12.56□□□□□ -0.4
SHROOM1-202ENST00000378676 LINC00336Q6ZUF6 198 aa12.56□□□□□ -0.4
SHROOM1-202ENST00000378676 K7EIL1 84 aa12.55□□□□□ -0.4
SHROOM1-202ENST00000378676 C3orf84H3BNL1 204 aa12.54□□□□□ -0.4
SHROOM1-202ENST00000378676 SPRR1AP35321 89 aa12.54□□□□□ -0.4
SHROOM1-202ENST00000378676 Q8N9L7 120 aa12.54□□□□□ -0.4
SHROOM1-202ENST00000378676 MDFIQ99750 246 aa12.54□□□□□ -0.4
SHROOM1-202ENST00000378676 ATP5EP56381 51 aaPredicted RBP12.53□□□□□ -0.4
SHROOM1-202ENST00000378676 DHRS4-AS1Q9P1J3 65 aa12.53□□□□□ -0.4
SHROOM1-202ENST00000378676 ST20-AS1Q8NBB2 130 aa12.52□□□□□ -0.4
SHROOM1-202ENST00000378676 IGLV5-48A0A075B6I7 105 aa12.52□□□□□ -0.41
SHROOM1-202ENST00000378676 ETDCA0A1B0GVM5 59 aa12.52□□□□□ -0.41
SHROOM1-202ENST00000378676 RMI2Q96E14 147 aa12.51□□□□□ -0.41
SHROOM1-202ENST00000378676 F8WEM9 126 aa12.51□□□□□ -0.41
SHROOM1-202ENST00000378676 FP248Q71RG6 208 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-202ENST00000378676 SNURFQ9Y675 71 aa12.5□□□□□ -0.41
SHROOM1-202ENST00000378676 IGKV4-1P06312 121 aa12.49□□□□□ -0.41
SHROOM1-202ENST00000378676 NREPQ16612 68 aa12.49□□□□□ -0.41
SHROOM1-202ENST00000378676 MRPL55Q7Z7F7 128 aaKnown RBP12.49□□□□□ -0.41
SHROOM1-202ENST00000378676 ERC2-IT1O76042 136 aa12.48□□□□□ -0.41
SHROOM1-202ENST00000378676 BPY2O14599 106 aa12.48□□□□□ -0.41
SHROOM1-202ENST00000378676 TNP2Q05952 138 aa12.48□□□□□ -0.41
SHROOM1-202ENST00000378676 DNAH10Q8IVF4 4471 aa12.46□□□□□ -0.41
SHROOM1-202ENST00000378676 A0A1W2PNM2 257 aa12.46□□□□□ -0.41
SHROOM1-202ENST00000378676 LYSTQ99698 3801 aa12.45□□□□□ -0.42
SHROOM1-202ENST00000378676 KRTAP1-5Q9BYS1 174 aa12.45□□□□□ -0.42
SHROOM1-202ENST00000378676 MGAM2Q2M2H8 2515 aa12.44□□□□□ -0.42
SHROOM1-202ENST00000378676 C1orf137Q5JT78 98 aa12.43□□□□□ -0.42
SHROOM1-202ENST00000378676 UBE2BP63146 152 aa12.42□□□□□ -0.42
SHROOM1-202ENST00000378676 COL7A1Q02388 2944 aa12.41□□□□□ -0.42
SHROOM1-202ENST00000378676 FUSP35637 526 aaKnown RBP eCLIP12.4□□□□□ -0.42
SHROOM1-202ENST00000378676 REG3GQ6UW15 175 aa12.4□□□□□ -0.42
SHROOM1-202ENST00000378676 A0A096LNI7 61 aa12.39□□□□□ -0.43
SHROOM1-202ENST00000378676 STAB2Q8WWQ8 2551 aa12.39□□□□□ -0.43
SHROOM1-202ENST00000378676 DNAH9Q9NYC9 4486 aa12.39□□□□□ -0.43
SHROOM1-202ENST00000378676 Q8NBF4 154 aa12.38□□□□□ -0.43
SHROOM1-202ENST00000378676 IGKV2-24A0A0C4DH68 120 aa12.36□□□□□ -0.43
SHROOM1-202ENST00000378676 LINC00474Q9P2X8 69 aa12.36□□□□□ -0.43
SHROOM1-202ENST00000378676 SMIM29Q86T20 159 aa12.36□□□□□ -0.43
SHROOM1-202ENST00000378676 TMEM254Q8TBM7 123 aa12.35□□□□□ -0.43
SHROOM1-202ENST00000378676 A0A1W2PNN7 141 aa12.34□□□□□ -0.43
SHROOM1-202ENST00000378676 SPRR4Q96PI1 79 aa12.34□□□□□ -0.43
SHROOM1-202ENST00000378676 OCR1Q9BZK8 76 aa12.33□□□□□ -0.44
SHROOM1-202ENST00000378676 A0A1B0GW54 56 aa12.33□□□□□ -0.44
SHROOM1-202ENST00000378676 A0A0G2JQZ4 141 aa12.32□□□□□ -0.44
SHROOM1-202ENST00000378676 PRLHP81277 87 aa12.32□□□□□ -0.44
SHROOM1-202ENST00000378676 C16orf90A8MZG2 172 aa12.32□□□□□ -0.44
SHROOM1-202ENST00000378676 CNBPP62633 177 aaKnown RBP12.31□□□□□ -0.44
SHROOM1-202ENST00000378676 PKIGQ9Y2B9 76 aa12.31□□□□□ -0.44
SHROOM1-202ENST00000378676 LINC00476Q8WZB0 136 aa12.3□□□□□ -0.44
SHROOM1-202ENST00000378676 PSCAO43653 123 aa12.29□□□□□ -0.44
SHROOM1-202ENST00000378676 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.29□□□□□ -0.44
SHROOM1-202ENST00000378676 BRK1Q8WUW1 75 aa12.28□□□□□ -0.44
SHROOM1-202ENST00000378676 UBE2DNLQ8IWF7 75 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms