RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 LYSTQ99698 3801 aa10.58□□□□□ -0.72
USH1C-202ENST00000318024 KLKP1Q107X0 134 aa10.57□□□□□ -0.72
USH1C-202ENST00000318024 FAM236DA0A1B0GTK5 79 aa10.57□□□□□ -0.72
USH1C-202ENST00000318024 FAM236CP0DP71 79 aa10.57□□□□□ -0.72
USH1C-202ENST00000318024 KLK12Q9UKR0 248 aa10.57□□□□□ -0.72
USH1C-202ENST00000318024 CXCL6P80162 114 aa10.56□□□□□ -0.72
USH1C-202ENST00000318024 Q6ZQY7 126 aa10.56□□□□□ -0.72
USH1C-202ENST00000318024 LAMTOR3Q9UHA4 124 aa10.56□□□□□ -0.72
USH1C-202ENST00000318024 PDE6GP18545 87 aa10.55□□□□□ -0.72
USH1C-202ENST00000318024 TRBV7-4A0A0J9YYF1 115 aa10.54□□□□□ -0.72
USH1C-202ENST00000318024 H3BQ85 93 aa10.54□□□□□ -0.72
USH1C-202ENST00000318024 SPAG11BQ08648 103 aa10.53□□□□□ -0.72
USH1C-202ENST00000318024 CSMD3Q7Z407 3707 aa10.53□□□□□ -0.72
USH1C-202ENST00000318024 GVQW2A0A096LPI5 108 aaPredicted RBP10.53□□□□□ -0.72
USH1C-202ENST00000318024 HAMPP81172 84 aa10.52□□□□□ -0.73
USH1C-202ENST00000318024 SERP1Q9Y6X1 66 aa10.52□□□□□ -0.73
USH1C-202ENST00000318024 KRTAP21-3Q3LHN1 58 aa10.5□□□□□ -0.73
USH1C-202ENST00000318024 PRR34Q9NV39 138 aa10.5□□□□□ -0.73
USH1C-202ENST00000318024 LINC00588Q9Y4M8 146 aa10.49□□□□□ -0.73
USH1C-202ENST00000318024 TRBV7-6A0A0J9YX20 115 aa10.49□□□□□ -0.73
USH1C-202ENST00000318024 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.49□□□□□ -0.73
USH1C-202ENST00000318024 RMI2Q96E14 147 aa10.48□□□□□ -0.73
USH1C-202ENST00000318024 DIRC1Q969H9 104 aa10.48□□□□□ -0.73
USH1C-202ENST00000318024 C6orf48Q9UBA6 75 aa10.48□□□□□ -0.73
USH1C-202ENST00000318024 PKIGQ9Y2B9 76 aa10.47□□□□□ -0.73
USH1C-202ENST00000318024 SNURFQ9Y675 71 aa10.46□□□□□ -0.73
USH1C-202ENST00000318024 PLECQ15149 4684 aaKnown RBP10.46□□□□□ -0.73
USH1C-202ENST00000318024 ELOF1P60002 83 aaKnown RBP10.46□□□□□ -0.74
USH1C-202ENST00000318024 LINC00336Q6ZUF6 198 aa10.46□□□□□ -0.74
USH1C-202ENST00000318024 TENM2Q9NT68 2774 aa10.46□□□□□ -0.74
USH1C-202ENST00000318024 DNAH7Q8WXX0 4024 aa10.45□□□□□ -0.74
USH1C-202ENST00000318024 ZNF73O43830 326 aaPredicted RBP10.45□□□□□ -0.74
USH1C-202ENST00000318024 C1orf195Q5TG92 126 aa10.44□□□□□ -0.74
USH1C-202ENST00000318024 LINC01556Q5JQF7 62 aa10.43□□□□□ -0.74
USH1C-202ENST00000318024 F8WEM9 126 aa10.43□□□□□ -0.74
USH1C-202ENST00000318024 COX7BP24311 80 aa10.43□□□□□ -0.74
USH1C-202ENST00000318024 XAGE1AQ9HD64 81 aa10.43□□□□□ -0.74
USH1C-202ENST00000318024 DYNC2H1Q8NCM8 4307 aaKnown RBP10.43□□□□□ -0.74
USH1C-202ENST00000318024 STARD9Q9P2P6 4700 aa10.43□□□□□ -0.74
USH1C-202ENST00000318024 VPREB1P12018 145 aa10.42□□□□□ -0.74
USH1C-202ENST00000318024 SCXQ7RTU7 201 aa10.42□□□□□ -0.74
USH1C-202ENST00000318024 FBN3Q75N90 2809 aa10.41□□□□□ -0.74
USH1C-202ENST00000318024 FP248Q71RG6 208 aaPredicted RBP10.41□□□□□ -0.74
USH1C-202ENST00000318024 NDUFC1O43677 76 aa10.4□□□□□ -0.74
USH1C-202ENST00000318024 DNAH10OSP0CZ25 163 aa10.4□□□□□ -0.74
USH1C-202ENST00000318024 APLNQ9ULZ1 77 aa10.39□□□□□ -0.75
USH1C-202ENST00000318024 IGKV2D-24A0A075B6R9 120 aa10.38□□□□□ -0.75
USH1C-202ENST00000318024 LINC00528Q8N1L1 170 aa10.38□□□□□ -0.75
USH1C-202ENST00000318024 DNAH1Q9P2D7 4330 aa10.38□□□□□ -0.75
USH1C-202ENST00000318024 ERC2-IT1O76042 136 aa10.38□□□□□ -0.75
USH1C-202ENST00000318024 SMIM26A0A096LP01 95 aa10.37□□□□□ -0.75
USH1C-202ENST00000318024 NREPQ16612 68 aa10.37□□□□□ -0.75
USH1C-202ENST00000318024 KRTAP26-1Q6PEX3 210 aa10.37□□□□□ -0.75
USH1C-202ENST00000318024 IGKV4-1P06312 121 aa10.36□□□□□ -0.75
USH1C-202ENST00000318024 TGP01266 2768 aa10.36□□□□□ -0.75
USH1C-202ENST00000318024 BPY2O14599 106 aa10.35□□□□□ -0.75
USH1C-202ENST00000318024 UBE2DNLQ8IWF7 75 aa10.35□□□□□ -0.75
USH1C-202ENST00000318024 M0R378 163 aa10.34□□□□□ -0.75
USH1C-202ENST00000318024 ATP5EP56381 51 aaPredicted RBP10.34□□□□□ -0.75
USH1C-202ENST00000318024 HIGD2BQ4VC39 106 aa10.34□□□□□ -0.75
USH1C-202ENST00000318024 TMEM254Q8TBM7 123 aa10.34□□□□□ -0.75
USH1C-202ENST00000318024 OCR1Q9BZK8 76 aa10.34□□□□□ -0.75
USH1C-202ENST00000318024 DNAH10Q8IVF4 4471 aa10.33□□□□□ -0.76
USH1C-202ENST00000318024 NUPR2A6NF83 97 aa10.33□□□□□ -0.76
USH1C-202ENST00000318024 Q8N9L7 120 aa10.31□□□□□ -0.76
USH1C-202ENST00000318024 A0A0U1RQV1 116 aa10.3□□□□□ -0.76
USH1C-202ENST00000318024 CASC10Q5T4H9 136 aa10.3□□□□□ -0.76
USH1C-202ENST00000318024 Q6ZRU5 148 aa10.3□□□□□ -0.76
USH1C-202ENST00000318024 KRTAP1-5Q9BYS1 174 aa10.3□□□□□ -0.76
USH1C-202ENST00000318024 LINC00474Q9P2X8 69 aa10.3□□□□□ -0.76
USH1C-202ENST00000318024 C15orf56Q8N910 161 aa10.29□□□□□ -0.76
USH1C-202ENST00000318024 CAMK2N2Q96S95 79 aa10.29□□□□□ -0.76
USH1C-202ENST00000318024 IGLV5-48A0A075B6I7 105 aa10.25□□□□□ -0.77
USH1C-202ENST00000318024 Q6ZRP5 223 aa10.25□□□□□ -0.77
USH1C-202ENST00000318024 Q8N377 158 aa10.25□□□□□ -0.77
USH1C-202ENST00000318024 FAM229BQ4G0N7 80 aa10.24□□□□□ -0.77
USH1C-202ENST00000318024 PRYO14603 147 aa10.23□□□□□ -0.77
USH1C-202ENST00000318024 KCNQ1DNQ9H478 68 aa10.23□□□□□ -0.77
USH1C-202ENST00000318024 KMT2AQ03164 3969 aa10.22□□□□□ -0.77
USH1C-202ENST00000318024 VPS13DQ5THJ4 4388 aa10.22□□□□□ -0.77
USH1C-202ENST00000318024 LCE6AA0A183 80 aa10.21□□□□□ -0.78
USH1C-202ENST00000318024 C3orf84H3BNL1 204 aa10.21□□□□□ -0.78
USH1C-202ENST00000318024 TNP2Q05952 138 aa10.19□□□□□ -0.78
USH1C-202ENST00000318024 BRK1Q8WUW1 75 aa10.19□□□□□ -0.78
USH1C-202ENST00000318024 HIGD2AQ9BW72 106 aa10.18□□□□□ -0.78
USH1C-202ENST00000318024 A0A1B0GW54 56 aa10.18□□□□□ -0.78
USH1C-202ENST00000318024 A0A1W2PNM2 257 aa10.18□□□□□ -0.78
USH1C-202ENST00000318024 NBDYA0A0U1RRE5 68 aa10.17□□□□□ -0.78
USH1C-202ENST00000318024 PSCAO43653 123 aa10.17□□□□□ -0.78
USH1C-202ENST00000318024 SERTAD4-AS1Q5TG53 156 aa10.17□□□□□ -0.78
USH1C-202ENST00000318024 KRTAP4-16G5E9R7 235 aaPredicted RBP10.17□□□□□ -0.78
USH1C-202ENST00000318024 C7orf33Q8WU49 177 aa10.17□□□□□ -0.78
USH1C-202ENST00000318024 FUSP35637 526 aaKnown RBP eCLIP10.16□□□□□ -0.78
USH1C-202ENST00000318024 SYCNQ0VAF6 134 aa10.16□□□□□ -0.78
USH1C-202ENST00000318024 SMIM29Q86T20 159 aa10.14□□□□□ -0.79
USH1C-202ENST00000318024 PMAIP1Q13794 54 aa10.14□□□□□ -0.79
USH1C-202ENST00000318024 DEFB105AQ8NG35 78 aa10.14□□□□□ -0.79
USH1C-202ENST00000318024 Q9BRP9 147 aa10.14□□□□□ -0.79
USH1C-202ENST00000318024 SPRR1AP35321 89 aa10.13□□□□□ -0.79
USH1C-202ENST00000318024 PLA2G2DQ9UNK4 145 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 162.1 ms