RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 C21orf62-AS1Q17RA5 79 aa12.47□□□□□ -0.41
HOXC4-201ENST00000303406 KRTAP7-1Q8IUC3 87 aa12.47□□□□□ -0.41
HOXC4-201ENST00000303406 LOC110117498A0A087WWA1 95 aa12.46□□□□□ -0.42
HOXC4-201ENST00000303406 FAM168BA1KXE4 195 aa12.46□□□□□ -0.42
HOXC4-201ENST00000303406 RBM3P98179 157 aaKnown RBP12.46□□□□□ -0.42
HOXC4-201ENST00000303406 SMCR5Q8TEV8 140 aa12.46□□□□□ -0.42
HOXC4-201ENST00000303406 PLECQ15149 4684 aaKnown RBP12.45□□□□□ -0.42
HOXC4-201ENST00000303406 KRTAP4-16G5E9R7 235 aaPredicted RBP12.45□□□□□ -0.42
HOXC4-201ENST00000303406 MRPL55Q7Z7F7 128 aaKnown RBP12.45□□□□□ -0.42
HOXC4-201ENST00000303406 IMUPQ9GZP8 106 aa12.45□□□□□ -0.42
HOXC4-201ENST00000303406 LRCOL1A6NCL2 159 aa12.44□□□□□ -0.42
HOXC4-201ENST00000303406 PDE6GP18545 87 aa12.44□□□□□ -0.42
HOXC4-201ENST00000303406 LAMTOR3Q9UHA4 124 aa12.44□□□□□ -0.42
HOXC4-201ENST00000303406 Q6ZRN7 208 aaPredicted RBP12.43□□□□□ -0.42
HOXC4-201ENST00000303406 DHRS4-AS1Q9P1J3 65 aa12.43□□□□□ -0.42
HOXC4-201ENST00000303406 DNAH7Q8WXX0 4024 aa12.43□□□□□ -0.42
HOXC4-201ENST00000303406 FAM19A5Q7Z5A7 132 aaPredicted RBP12.42□□□□□ -0.42
HOXC4-201ENST00000303406 A0A096LNI7 61 aa12.41□□□□□ -0.42
HOXC4-201ENST00000303406 B5MCH6 92 aa12.41□□□□□ -0.42
HOXC4-201ENST00000303406 Q6ZRX8 168 aa12.41□□□□□ -0.42
HOXC4-201ENST00000303406 Q6ZQT0 140 aa12.4□□□□□ -0.42
HOXC4-201ENST00000303406 C9orf163Q8N9P6 203 aa12.39□□□□□ -0.43
HOXC4-201ENST00000303406 LINC00846Q9NV44 126 aa12.39□□□□□ -0.43
HOXC4-201ENST00000303406 VPS13DQ5THJ4 4388 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 ETDCA0A1B0GVM5 59 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 RPL37AP8A6NKH3 93 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 DSCR8Q96T75 97 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 A0A1B0GV72 72 aa12.37□□□□□ -0.43
HOXC4-201ENST00000303406 NDUFV3P56181 108 aaKnown RBP12.37□□□□□ -0.43
HOXC4-201ENST00000303406 Q6JHZ5 121 aa12.37□□□□□ -0.43
HOXC4-201ENST00000303406 CSMD3Q7Z407 3707 aa12.37□□□□□ -0.43
HOXC4-201ENST00000303406 PRKDCP78527 4128 aaKnown RBP12.36□□□□□ -0.43
HOXC4-201ENST00000303406 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.35□□□□□ -0.43
HOXC4-201ENST00000303406 TRBV7-4A0A0J9YYF1 115 aa12.35□□□□□ -0.43
HOXC4-201ENST00000303406 DNAH10Q8IVF4 4471 aa12.34□□□□□ -0.43
HOXC4-201ENST00000303406 REG3GQ6UW15 175 aa12.34□□□□□ -0.43
HOXC4-201ENST00000303406 LYSTQ99698 3801 aa12.33□□□□□ -0.44
HOXC4-201ENST00000303406 IGKV2-24A0A0C4DH68 120 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 A0A1W2PNN7 141 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 Q9BRP9 147 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 LINC00474Q9P2X8 69 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 STARD9Q9P2P6 4700 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 DNHD1Q96M86 4753 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 ATP5EP2Q5VTU8 51 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 Q6ZR54 194 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 IGLV5-48A0A075B6I7 105 aa12.3□□□□□ -0.44
HOXC4-201ENST00000303406 LINC01547P58512 204 aaPredicted RBP12.3□□□□□ -0.44
HOXC4-201ENST00000303406 Q8N377 158 aa12.28□□□□□ -0.44
HOXC4-201ENST00000303406 UBL5Q9BZL1 73 aa12.28□□□□□ -0.44
HOXC4-201ENST00000303406 A0A087WTM6 91 aa12.26□□□□□ -0.45
HOXC4-201ENST00000303406 M0R2N4 97 aa12.25□□□□□ -0.45
HOXC4-201ENST00000303406 UBE2BP63146 152 aa12.24□□□□□ -0.45
HOXC4-201ENST00000303406 ANAPC13Q9BS18 74 aa12.24□□□□□ -0.45
HOXC4-201ENST00000303406 MEGF8Q7Z7M0 2845 aa12.24□□□□□ -0.45
HOXC4-201ENST00000303406 EPM2AB3EWF7 344 aa12.22□□□□□ -0.45
HOXC4-201ENST00000303406 CHTF8P0CG12 524 aa12.22□□□□□ -0.45
HOXC4-201ENST00000303406 H0Y9J4 135 aa12.21□□□□□ -0.45
HOXC4-201ENST00000303406 DEFB105AQ8NG35 78 aa12.21□□□□□ -0.46
HOXC4-201ENST00000303406 IGKV3D-7A0A0C4DH55 119 aa12.2□□□□□ -0.46
HOXC4-201ENST00000303406 TNP2Q05952 138 aa12.2□□□□□ -0.46
HOXC4-201ENST00000303406 A0A1B0GW54 56 aa12.19□□□□□ -0.46
HOXC4-201ENST00000303406 ERC2-IT1O76042 136 aa12.19□□□□□ -0.46
HOXC4-201ENST00000303406 PHF5AQ7RTV0 110 aaKnown RBP12.19□□□□□ -0.46
HOXC4-201ENST00000303406 FAM19A1Q7Z5A9 133 aa12.19□□□□□ -0.46
HOXC4-201ENST00000303406 FAM236AA0A1B0GUQ0 79 aa12.18□□□□□ -0.46
HOXC4-201ENST00000303406 FAM236BA0A1B0GV22 79 aa12.18□□□□□ -0.46
HOXC4-201ENST00000303406 ST20-AS1Q8NBB2 130 aa12.18□□□□□ -0.46
HOXC4-201ENST00000303406 SPACA4Q8TDM5 124 aa12.17□□□□□ -0.46
HOXC4-201ENST00000303406 HIST1H4AP62805 103 aaKnown RBP12.16□□□□□ -0.46
HOXC4-201ENST00000303406 Q6ZVQ6 151 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 WWC2-AS2Q96NR7 200 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 C1orf134Q5TEV5 83 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 DNAH6Q9C0G6 4158 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 RTL8CO15255 209 aa12.12□□□□□ -0.47
HOXC4-201ENST00000303406 CXCL6P80162 114 aa12.12□□□□□ -0.47
HOXC4-201ENST00000303406 PRLHP81277 87 aa12.12□□□□□ -0.47
HOXC4-201ENST00000303406 PANO1I0J062 215 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 KRTAP11-1Q8IUC1 163 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 TENM2Q9NT68 2774 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 SMIM29Q86T20 159 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 LINC00476Q8WZB0 136 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.1□□□□□ -0.47
HOXC4-201ENST00000303406 DNAH17Q9UFH2 4485 aa12.1□□□□□ -0.47
HOXC4-201ENST00000303406 J3QL48 77 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 BCE1O60756 84 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 LY6G6CO95867 125 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 SPRR1BP22528 89 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 C1orf137Q5JT78 98 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 C3orf22Q8N5N4 141 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 ATOX1O00244 68 aa12.08□□□□□ -0.48
HOXC4-201ENST00000303406 FUSP35637 526 aaKnown RBP eCLIP12.08□□□□□ -0.48
HOXC4-201ENST00000303406 IGLV8-61A0A075B6I0 122 aa12.07□□□□□ -0.48
HOXC4-201ENST00000303406 HIGD2AQ9BW72 106 aa12.07□□□□□ -0.48
HOXC4-201ENST00000303406 F8WEM9 126 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 Q8NBF4 154 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 DNAH2Q9P225 4427 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 KRTAP13-1Q8IUC0 172 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 DPH3Q96FX2 82 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 ALMS1Q8TCU4 4167 aa12.05□□□□□ -0.48
HOXC4-201ENST00000303406 UBE2AP49459 152 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms