RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 SNURFQ9Y675 71 aa14.49□□□□□ -0.09
TPM4-201ENST00000300933 TRAV10A0A0B4J240 114 aa14.49□□□□□ -0.09
TPM4-201ENST00000300933 LINC01547P58512 204 aaPredicted RBP14.49□□□□□ -0.09
TPM4-201ENST00000300933 H7BZZ5 65 aa14.47□□□□□ -0.09
TPM4-201ENST00000300933 CASC10Q5T4H9 136 aa14.47□□□□□ -0.09
TPM4-201ENST00000300933 Q6ZVQ6 151 aa14.46□□□□□ -0.1
TPM4-201ENST00000300933 GVQW2A0A096LPI5 108 aaPredicted RBP14.45□□□□□ -0.1
TPM4-201ENST00000300933 TRAV7A0A075B6U4 112 aa14.44□□□□□ -0.1
TPM4-201ENST00000300933 Q6ZQY7 126 aa14.44□□□□□ -0.1
TPM4-201ENST00000300933 RMI2Q96E14 147 aa14.44□□□□□ -0.1
TPM4-201ENST00000300933 SCXQ7RTU7 201 aa14.43□□□□□ -0.1
TPM4-201ENST00000300933 DNAH10OSP0CZ25 163 aa14.42□□□□□ -0.1
TPM4-201ENST00000300933 Q6ZRP5 223 aa14.41□□□□□ -0.1
TPM4-201ENST00000300933 LOC110117498A0A087WWA1 95 aa14.4□□□□□ -0.1
TPM4-201ENST00000300933 IGLV6-57P01721 117 aa14.39□□□□□ -0.11
TPM4-201ENST00000300933 CSMD3Q7Z407 3707 aa14.38□□□□□ -0.11
TPM4-201ENST00000300933 DNAH10Q8IVF4 4471 aa14.38□□□□□ -0.11
TPM4-201ENST00000300933 SERP1Q9Y6X1 66 aa14.38□□□□□ -0.11
TPM4-201ENST00000300933 F8WEM9 126 aa14.37□□□□□ -0.11
TPM4-201ENST00000300933 DNAH9Q9NYC9 4486 aa14.37□□□□□ -0.11
TPM4-201ENST00000300933 SYCNQ0VAF6 134 aa14.36□□□□□ -0.11
TPM4-201ENST00000300933 VPREB1P12018 145 aa14.35□□□□□ -0.11
TPM4-201ENST00000300933 KLKP1Q107X0 134 aa14.35□□□□□ -0.11
TPM4-201ENST00000300933 DNAH1Q9P2D7 4330 aa14.33□□□□□ -0.12
TPM4-201ENST00000300933 MUC7Q8TAX7 377 aa14.33□□□□□ -0.12
TPM4-201ENST00000300933 DNAH7Q8WXX0 4024 aa14.33□□□□□ -0.12
TPM4-201ENST00000300933 LINC00336Q6ZUF6 198 aa14.31□□□□□ -0.12
TPM4-201ENST00000300933 EPM2AB3EWF7 344 aa14.3□□□□□ -0.12
TPM4-201ENST00000300933 BCE1O60756 84 aa14.29□□□□□ -0.12
TPM4-201ENST00000300933 CXCL6P80162 114 aa14.29□□□□□ -0.12
TPM4-201ENST00000300933 ZNF73O43830 326 aaPredicted RBP14.29□□□□□ -0.12
TPM4-201ENST00000300933 SERTAD4-AS1Q5TG53 156 aa14.28□□□□□ -0.12
TPM4-201ENST00000300933 DIRC1Q969H9 104 aa14.27□□□□□ -0.12
TPM4-201ENST00000300933 FAM168BA1KXE4 195 aa14.26□□□□□ -0.13
TPM4-201ENST00000300933 KRTAP1-5Q9BYS1 174 aa14.26□□□□□ -0.13
TPM4-201ENST00000300933 FP248Q71RG6 208 aaPredicted RBP14.26□□□□□ -0.13
TPM4-201ENST00000300933 Q8N9L7 120 aa14.26□□□□□ -0.13
TPM4-201ENST00000300933 PDE6GP18545 87 aa14.25□□□□□ -0.13
TPM4-201ENST00000300933 LINC00474Q9P2X8 69 aa14.25□□□□□ -0.13
TPM4-201ENST00000300933 M0R378 163 aa14.24□□□□□ -0.13
TPM4-201ENST00000300933 TRBV7-4A0A0J9YYF1 115 aa14.21□□□□□ -0.13
TPM4-201ENST00000300933 COX7BP24311 80 aa14.21□□□□□ -0.13
TPM4-201ENST00000300933 RPL37AP8A6NKH3 93 aa14.21□□□□□ -0.13
TPM4-201ENST00000300933 NREPQ16612 68 aa14.21□□□□□ -0.13
TPM4-201ENST00000300933 TRBV7-6A0A0J9YX20 115 aa14.2□□□□□ -0.14
TPM4-201ENST00000300933 SMIM26A0A096LP01 95 aa14.2□□□□□ -0.14
TPM4-201ENST00000300933 BPY2O14599 106 aa14.19□□□□□ -0.14
TPM4-201ENST00000300933 NKAPP1Q8N9T2 125 aa14.18□□□□□ -0.14
TPM4-201ENST00000300933 PLECQ15149 4684 aaKnown RBP14.18□□□□□ -0.14
TPM4-201ENST00000300933 PRO0628Q9UI54 55 aa14.18□□□□□ -0.14
TPM4-201ENST00000300933 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.17□□□□□ -0.14
TPM4-201ENST00000300933 C7orf33Q8WU49 177 aa14.17□□□□□ -0.14
TPM4-201ENST00000300933 ELOF1P60002 83 aaKnown RBP14.17□□□□□ -0.14
TPM4-201ENST00000300933 UBE2DNLQ8IWF7 75 aa14.17□□□□□ -0.14
TPM4-201ENST00000300933 PRKDCP78527 4128 aaKnown RBP14.17□□□□□ -0.14
TPM4-201ENST00000300933 TMEM254Q8TBM7 123 aa14.16□□□□□ -0.14
TPM4-201ENST00000300933 H3BQ85 93 aa14.13□□□□□ -0.15
TPM4-201ENST00000300933 NDUFC1O43677 76 aa14.13□□□□□ -0.15
TPM4-201ENST00000300933 KRTAP7-1Q8IUC3 87 aa14.13□□□□□ -0.15
TPM4-201ENST00000300933 APLNQ9ULZ1 77 aa14.12□□□□□ -0.15
TPM4-201ENST00000300933 DNHD1Q96M86 4753 aa14.12□□□□□ -0.15
TPM4-201ENST00000300933 B9D2Q9BPU9 175 aa14.11□□□□□ -0.15
TPM4-201ENST00000300933 LINC00528Q8N1L1 170 aa14.1□□□□□ -0.15
TPM4-201ENST00000300933 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.1□□□□□ -0.15
TPM4-201ENST00000300933 PKIGQ9Y2B9 76 aa14.1□□□□□ -0.15
TPM4-201ENST00000300933 MEGF8Q7Z7M0 2845 aa14.09□□□□□ -0.15
TPM4-201ENST00000300933 F8WDY8 70 aa14.09□□□□□ -0.15
TPM4-201ENST00000300933 PSCAO43653 123 aa14.09□□□□□ -0.15
TPM4-201ENST00000300933 FAM229BQ4G0N7 80 aa14.09□□□□□ -0.15
TPM4-201ENST00000300933 MPLKIPQ8TAP9 179 aa14.09□□□□□ -0.15
TPM4-201ENST00000300933 C3orf84H3BNL1 204 aa14.09□□□□□ -0.15
TPM4-201ENST00000300933 DEFB105AQ8NG35 78 aa14.08□□□□□ -0.15
TPM4-201ENST00000300933 IGKV2-24A0A0C4DH68 120 aa14.07□□□□□ -0.16
TPM4-201ENST00000300933 IGKV4-1P06312 121 aa14.07□□□□□ -0.16
TPM4-201ENST00000300933 TLX1NBP0CAT3 122 aa14.07□□□□□ -0.16
TPM4-201ENST00000300933 STARD9Q9P2P6 4700 aa14.06□□□□□ -0.16
TPM4-201ENST00000300933 BRK1Q8WUW1 75 aa14.06□□□□□ -0.16
TPM4-201ENST00000300933 KCNQ1DNQ9H478 68 aa14.05□□□□□ -0.16
TPM4-201ENST00000300933 ATP5EP56381 51 aaPredicted RBP14.02□□□□□ -0.16
TPM4-201ENST00000300933 PRYO14603 147 aa14.02□□□□□ -0.17
TPM4-201ENST00000300933 HIGD2AQ9BW72 106 aa14.02□□□□□ -0.17
TPM4-201ENST00000300933 OCR1Q9BZK8 76 aa14.01□□□□□ -0.17
TPM4-201ENST00000300933 DYNC2H1Q8NCM8 4307 aaKnown RBP14.01□□□□□ -0.17
TPM4-201ENST00000300933 SRRM2Q9UQ35 2752 aaKnown RBP14□□□□□ -0.17
TPM4-201ENST00000300933 IGLV1-50A0A075B6I6 118 aa14□□□□□ -0.17
TPM4-201ENST00000300933 A0A096LNI7 61 aa13.99□□□□□ -0.17
TPM4-201ENST00000300933 A0A0U1RQV1 116 aa13.99□□□□□ -0.17
TPM4-201ENST00000300933 MRPL55Q7Z7F7 128 aaKnown RBP13.98□□□□□ -0.17
TPM4-201ENST00000300933 FUSP35637 526 aaKnown RBP eCLIP13.98□□□□□ -0.17
TPM4-201ENST00000300933 Q9BRP9 147 aa13.97□□□□□ -0.17
TPM4-201ENST00000300933 ERC2-IT1O76042 136 aa13.97□□□□□ -0.17
TPM4-201ENST00000300933 CHTF8P0CG12 524 aa13.96□□□□□ -0.17
TPM4-201ENST00000300933 ST20-AS1Q8NBB2 130 aa13.96□□□□□ -0.18
TPM4-201ENST00000300933 TGP01266 2768 aa13.95□□□□□ -0.18
TPM4-201ENST00000300933 FAM30AQ9NZY2 134 aa13.95□□□□□ -0.18
TPM4-201ENST00000300933 PLA2G2DQ9UNK4 145 aa13.95□□□□□ -0.18
TPM4-201ENST00000300933 ETDCA0A1B0GVM5 59 aa13.94□□□□□ -0.18
TPM4-201ENST00000300933 A0A1W2PNN7 141 aa13.94□□□□□ -0.18
TPM4-201ENST00000300933 Q6ZRX8 168 aa13.93□□□□□ -0.18
TPM4-201ENST00000300933 KRTAP4-16G5E9R7 235 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms