RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 OR13C6PQ8NH95 151 aa12.32□□□□□ -0.44
CLN3-263ENST00000637871 A0A1B0GX51 115 aa12.31□□□□□ -0.44
CLN3-263ENST00000637871 C2orf48Q96LS8 159 aa12.31□□□□□ -0.44
CLN3-263ENST00000637871 LYSTQ99698 3801 aa12.31□□□□□ -0.44
CLN3-263ENST00000637871 DNAH10OSP0CZ25 163 aa12.3□□□□□ -0.44
CLN3-263ENST00000637871 CASC10Q5T4H9 136 aa12.3□□□□□ -0.44
CLN3-263ENST00000637871 C1orf43Q9BWL3 253 aa12.3□□□□□ -0.44
CLN3-263ENST00000637871 ZNF561-AS1K7EIQ3 104 aa12.29□□□□□ -0.44
CLN3-263ENST00000637871 UNQ6190/PRO20217Q6UXQ8 127 aa12.29□□□□□ -0.44
CLN3-263ENST00000637871 NUPR2A6NF83 97 aa12.29□□□□□ -0.44
CLN3-263ENST00000637871 KRTAP26-1Q6PEX3 210 aa12.29□□□□□ -0.44
CLN3-263ENST00000637871 SCGB1A1P11684 91 aa12.28□□□□□ -0.44
CLN3-263ENST00000637871 PCP4P48539 62 aa12.28□□□□□ -0.44
CLN3-263ENST00000637871 SNCGO76070 127 aa12.27□□□□□ -0.44
CLN3-263ENST00000637871 DNAL4O96015 105 aa12.27□□□□□ -0.44
CLN3-263ENST00000637871 C3orf84H3BNL1 204 aa12.26□□□□□ -0.45
CLN3-263ENST00000637871 BAALC-AS2P0C853 105 aa12.26□□□□□ -0.45
CLN3-263ENST00000637871 C10orf25Q5T742 122 aa12.25□□□□□ -0.45
CLN3-263ENST00000637871 C6orf223Q8N319 242 aa12.25□□□□□ -0.45
CLN3-263ENST00000637871 TEX49A0A1B0GTD5 131 aa12.24□□□□□ -0.45
CLN3-263ENST00000637871 FAM240AA0A1B0GVK7 77 aa12.24□□□□□ -0.45
CLN3-263ENST00000637871 C9orf116Q5BN46 136 aaPredicted RBP12.24□□□□□ -0.45
CLN3-263ENST00000637871 RMI2Q96E14 147 aa12.23□□□□□ -0.45
CLN3-263ENST00000637871 FAM218AQ96MZ4 157 aa12.23□□□□□ -0.45
CLN3-263ENST00000637871 CAMK2N2Q96S95 79 aa12.23□□□□□ -0.45
CLN3-263ENST00000637871 CDIP1Q9H305 208 aa12.22□□□□□ -0.45
CLN3-263ENST00000637871 C6orf48Q9UBA6 75 aa12.22□□□□□ -0.45
CLN3-263ENST00000637871 ACYP1P07311 99 aa12.22□□□□□ -0.45
CLN3-263ENST00000637871 INAFM2P0DMQ5 153 aa12.21□□□□□ -0.46
CLN3-263ENST00000637871 S100A7L2Q5SY68 101 aa12.21□□□□□ -0.46
CLN3-263ENST00000637871 UPK3BQ9BT76 320 aa12.21□□□□□ -0.46
CLN3-263ENST00000637871 APLNQ9ULZ1 77 aa12.21□□□□□ -0.46
CLN3-263ENST00000637871 IGKV2D-24A0A075B6R9 120 aa12.19□□□□□ -0.46
CLN3-263ENST00000637871 C15orf56Q8N910 161 aa12.19□□□□□ -0.46
CLN3-263ENST00000637871 ALMS1Q8TCU4 4167 aa12.18□□□□□ -0.46
CLN3-263ENST00000637871 LINC00588Q9Y4M8 146 aa12.18□□□□□ -0.46
CLN3-263ENST00000637871 LINC00526Q96FQ7 95 aa12.17□□□□□ -0.46
CLN3-263ENST00000637871 LINC00167Q96N53 147 aa12.17□□□□□ -0.46
CLN3-263ENST00000637871 A0A087WYN8 130 aa12.16□□□□□ -0.46
CLN3-263ENST00000637871 H3BQ85 93 aa12.16□□□□□ -0.46
CLN3-263ENST00000637871 NDUFC2-KCTD14E9PQ53 114 aa12.15□□□□□ -0.46
CLN3-263ENST00000637871 LECT2O14960 151 aa12.15□□□□□ -0.46
CLN3-263ENST00000637871 IGLV6-57P01721 117 aa12.15□□□□□ -0.46
CLN3-263ENST00000637871 ORMDL1Q9P0S3 153 aa12.15□□□□□ -0.46
CLN3-263ENST00000637871 PRR3P79522 188 aaKnown RBP12.15□□□□□ -0.47
CLN3-263ENST00000637871 HIGD2BQ4VC39 106 aa12.15□□□□□ -0.47
CLN3-263ENST00000637871 DNAH1Q9P2D7 4330 aa12.15□□□□□ -0.47
CLN3-263ENST00000637871 NCR3O14931 201 aa12.14□□□□□ -0.47
CLN3-263ENST00000637871 VPS13DQ5THJ4 4388 aa12.14□□□□□ -0.47
CLN3-263ENST00000637871 KMT2CQ8NEZ4 4911 aaKnown RBP12.14□□□□□ -0.47
CLN3-263ENST00000637871 SYCNQ0VAF6 134 aa12.13□□□□□ -0.47
CLN3-263ENST00000637871 Q6ZRU5 148 aa12.13□□□□□ -0.47
CLN3-263ENST00000637871 Q9HAA7 133 aa12.13□□□□□ -0.47
CLN3-263ENST00000637871 Q8N814 137 aa12.12□□□□□ -0.47
CLN3-263ENST00000637871 SACSQ9NZJ4 4579 aa12.11□□□□□ -0.47
CLN3-263ENST00000637871 TRBV7-6A0A0J9YX20 115 aa12.11□□□□□ -0.47
CLN3-263ENST00000637871 TMEM256-PLSCR3K7ERE1 68 aa12.11□□□□□ -0.47
CLN3-263ENST00000637871 C6orf99Q4VX62 202 aa12.11□□□□□ -0.47
CLN3-263ENST00000637871 M0R378 163 aa12.1□□□□□ -0.47
CLN3-263ENST00000637871 GHRHP01286 108 aa12.1□□□□□ -0.47
CLN3-263ENST00000637871 TLX1NBP0CAT3 122 aa12.1□□□□□ -0.47
CLN3-263ENST00000637871 OBSCN-AS1Q96MR7 158 aa12.1□□□□□ -0.47
CLN3-263ENST00000637871 C22orf24Q9Y442 160 aa12.1□□□□□ -0.47
CLN3-263ENST00000637871 RPL18AQ02543 176 aaKnown RBP12.09□□□□□ -0.47
CLN3-263ENST00000637871 Q8NDZ9 215 aa12.09□□□□□ -0.47
CLN3-263ENST00000637871 LY6G6CO95867 125 aa12.08□□□□□ -0.48
CLN3-263ENST00000637871 XGP55808 180 aa12.08□□□□□ -0.48
CLN3-263ENST00000637871 LINC00575Q6W349 94 aa12.08□□□□□ -0.48
CLN3-263ENST00000637871 LINC00476Q8WZB0 136 aa12.08□□□□□ -0.48
CLN3-263ENST00000637871 VPREB1P12018 145 aa12.08□□□□□ -0.48
CLN3-263ENST00000637871 HYDINQ4G0P3 5121 aa12.07□□□□□ -0.48
CLN3-263ENST00000637871 JMJD7-PLA2G4BH0Y9G9 81 aa12.07□□□□□ -0.48
CLN3-263ENST00000637871 UBE2DNLQ8IWF7 75 aa12.07□□□□□ -0.48
CLN3-263ENST00000637871 XAGE1AQ9HD64 81 aa12.07□□□□□ -0.48
CLN3-263ENST00000637871 DIRC1Q969H9 104 aa12.06□□□□□ -0.48
CLN3-263ENST00000637871 KMT2AQ03164 3969 aa12.06□□□□□ -0.48
CLN3-263ENST00000637871 TRAV23DV6A0A075B6W5 121 aa12.05□□□□□ -0.48
CLN3-263ENST00000637871 hADV29S1A0JD25 119 aa12.05□□□□□ -0.48
CLN3-263ENST00000637871 MT-ATP8P03928 68 aa12.05□□□□□ -0.48
CLN3-263ENST00000637871 PLA2G2DQ9UNK4 145 aa12.05□□□□□ -0.48
CLN3-263ENST00000637871 Q6Q795 121 aa12.04□□□□□ -0.48
CLN3-263ENST00000637871 TRBV10-3A0A0K0K1G6 114 aa12.04□□□□□ -0.48
CLN3-263ENST00000637871 LCE6AA0A183 80 aa12.02□□□□□ -0.49
CLN3-263ENST00000637871 USP17L23D6RBM5 183 aa12.02□□□□□ -0.49
CLN3-263ENST00000637871 RYR2Q92736 4967 aa12.02□□□□□ -0.49
CLN3-263ENST00000637871 ZNF73O43830 326 aaPredicted RBP12□□□□□ -0.49
CLN3-263ENST00000637871 Q6ZRP5 223 aa12□□□□□ -0.49
CLN3-263ENST00000637871 GAGE2EQ4V326 116 aa12□□□□□ -0.49
CLN3-263ENST00000637871 GAGE2DQ9UEU5 116 aa12□□□□□ -0.49
CLN3-263ENST00000637871 DNAH6Q9C0G6 4158 aa12□□□□□ -0.49
CLN3-263ENST00000637871 SLPIP03973 132 aa11.99□□□□□ -0.49
CLN3-263ENST00000637871 COX7BP24311 80 aa11.99□□□□□ -0.49
CLN3-263ENST00000637871 GAGE2BQ13066 116 aa11.99□□□□□ -0.49
CLN3-263ENST00000637871 SDIM1Q6ZPB5 146 aa11.99□□□□□ -0.49
CLN3-263ENST00000637871 LINC00643Q86TS7 51 aa11.99□□□□□ -0.49
CLN3-263ENST00000637871 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.98□□□□□ -0.49
CLN3-263ENST00000637871 ELOF1P60002 83 aaKnown RBP11.97□□□□□ -0.49
CLN3-263ENST00000637871 C21orf62-AS1Q17RA5 79 aa11.97□□□□□ -0.49
CLN3-263ENST00000637871 IMUPQ9GZP8 106 aa11.97□□□□□ -0.49
CLN3-263ENST00000637871 RYR3Q15413 4870 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms