RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 J3QQQ9 107 aa11.61□□□□□ -0.55
CDX1-202ENST00000616154 PRSS2P07478 247 aa11.61□□□□□ -0.55
CDX1-202ENST00000616154 SMIM6P0DI80 62 aa11.61□□□□□ -0.55
CDX1-202ENST00000616154 C6orf226Q5I0X4 101 aa11.61□□□□□ -0.55
CDX1-202ENST00000616154 ZNF625Q96I27 306 aaPredicted RBP11.61□□□□□ -0.55
CDX1-202ENST00000616154 TOMM7Q9P0U1 55 aa11.61□□□□□ -0.55
CDX1-202ENST00000616154 HSBP1L1C9JCN9 74 aa11.6□□□□□ -0.55
CDX1-202ENST00000616154 C2orf82Q6UX34 121 aa11.6□□□□□ -0.55
CDX1-202ENST00000616154 SFTA2Q6UW10 78 aa11.6□□□□□ -0.55
CDX1-202ENST00000616154 NDUFC2-KCTD14E9PQ53 114 aa11.59□□□□□ -0.55
CDX1-202ENST00000616154 NMUP48645 174 aa11.59□□□□□ -0.55
CDX1-202ENST00000616154 PHF5AQ7RTV0 110 aaKnown RBP11.59□□□□□ -0.55
CDX1-202ENST00000616154 VAMP8Q9BV40 100 aa11.59□□□□□ -0.55
CDX1-202ENST00000616154 C1orf137Q5JT78 98 aa11.58□□□□□ -0.56
CDX1-202ENST00000616154 NDUFA12Q9UI09 145 aa11.58□□□□□ -0.56
CDX1-202ENST00000616154 CKS1BP61024 79 aa11.57□□□□□ -0.56
CDX1-202ENST00000616154 KRTAP7-1Q8IUC3 87 aa11.57□□□□□ -0.56
CDX1-202ENST00000616154 LGALS3P17931 250 aaKnown RBP11.56□□□□□ -0.56
CDX1-202ENST00000616154 FAM168BA1KXE4 195 aa11.55□□□□□ -0.56
CDX1-202ENST00000616154 SPATA45Q537H7 98 aa11.55□□□□□ -0.56
CDX1-202ENST00000616154 PAM16Q9Y3D7 125 aa11.55□□□□□ -0.56
CDX1-202ENST00000616154 MYMXA0A1B0GTQ4 84 aa11.54□□□□□ -0.56
CDX1-202ENST00000616154 HERV-K104P63124 156 aa11.54□□□□□ -0.56
CDX1-202ENST00000616154 GAGE2EQ4V326 116 aa11.54□□□□□ -0.56
CDX1-202ENST00000616154 PCP2Q8IVA1 136 aa11.54□□□□□ -0.56
CDX1-202ENST00000616154 TTTY13Q9BZ97 58 aa11.54□□□□□ -0.56
CDX1-202ENST00000616154 GAGE2DQ9UEU5 116 aa11.54□□□□□ -0.56
CDX1-202ENST00000616154 C9orf129Q5T035 196 aaKnown RBP11.53□□□□□ -0.56
CDX1-202ENST00000616154 IGLV7-43P04211 117 aa11.52□□□□□ -0.57
CDX1-202ENST00000616154 COX8AP10176 69 aa11.52□□□□□ -0.57
CDX1-202ENST00000616154 ZNF815PA8K554 130 aa11.51□□□□□ -0.57
CDX1-202ENST00000616154 DLEU1O43261 78 aa11.51□□□□□ -0.57
CDX1-202ENST00000616154 DIRC1Q969H9 104 aa11.51□□□□□ -0.57
CDX1-202ENST00000616154 S100A12P80511 92 aa11.5□□□□□ -0.57
CDX1-202ENST00000616154 FAM19A5Q7Z5A7 132 aaPredicted RBP11.5□□□□□ -0.57
CDX1-202ENST00000616154 KRTAP11-1Q8IUC1 163 aa11.5□□□□□ -0.57
CDX1-202ENST00000616154 BOD1L2Q8IYS8 172 aa11.5□□□□□ -0.57
CDX1-202ENST00000616154 LPAP08519 4548 aa11.5□□□□□ -0.57
CDX1-202ENST00000616154 A0A0J9YXY3 114 aa11.49□□□□□ -0.57
CDX1-202ENST00000616154 COX17Q14061 63 aa11.49□□□□□ -0.57
CDX1-202ENST00000616154 M0QXV9 152 aa11.48□□□□□ -0.57
CDX1-202ENST00000616154 ERG28Q9UKR5 140 aa11.48□□□□□ -0.57
CDX1-202ENST00000616154 H0Y9J4 135 aa11.47□□□□□ -0.57
CDX1-202ENST00000616154 LINC00518Q8N0U6 118 aa11.47□□□□□ -0.57
CDX1-202ENST00000616154 PRR26Q8N8Z3 221 aa11.47□□□□□ -0.57
CDX1-202ENST00000616154 C12orf57Q99622 126 aa11.47□□□□□ -0.57
CDX1-202ENST00000616154 LINC00587B1AMM8 73 aa11.46□□□□□ -0.57
CDX1-202ENST00000616154 TIMM17BO60830 172 aa11.46□□□□□ -0.57
CDX1-202ENST00000616154 C14orf144Q96I85 54 aa11.46□□□□□ -0.57
CDX1-202ENST00000616154 LITAFQ99732 161 aa11.46□□□□□ -0.57
CDX1-202ENST00000616154 SLC25A34Q6PIV7 304 aa11.43□□□□□ -0.58
CDX1-202ENST00000616154 TP73-AS1Q9UF72 201 aa11.43□□□□□ -0.58
CDX1-202ENST00000616154 SMIM13P0DJ93 91 aa11.42□□□□□ -0.58
CDX1-202ENST00000616154 XAGE1AQ9HD64 81 aa11.42□□□□□ -0.58
CDX1-202ENST00000616154 IGLV1-50A0A075B6I6 118 aa11.41□□□□□ -0.58
CDX1-202ENST00000616154 PFN2P35080 140 aa11.41□□□□□ -0.58
CDX1-202ENST00000616154 MEIG1Q5JSS6 88 aa11.41□□□□□ -0.58
CDX1-202ENST00000616154 ADAMTSL4-AS1Q5T5F5 129 aa11.41□□□□□ -0.58
CDX1-202ENST00000616154 KRTAP1-4P0C5Y4 121 aa11.4□□□□□ -0.58
CDX1-202ENST00000616154 UBE2BP63146 152 aa11.4□□□□□ -0.58
CDX1-202ENST00000616154 SCGB1D4Q6XE38 83 aa11.4□□□□□ -0.58
CDX1-202ENST00000616154 HIGD1BQ9P298 99 aa11.4□□□□□ -0.58
CDX1-202ENST00000616154 C22orf24Q9Y442 160 aa11.4□□□□□ -0.58
CDX1-202ENST00000616154 LOC107984156A0A0G2JMH3 177 aa11.39□□□□□ -0.59
CDX1-202ENST00000616154 LINC00158P58513 81 aa11.39□□□□□ -0.59
CDX1-202ENST00000616154 C2orf91Q6ZV80 131 aa11.39□□□□□ -0.59
CDX1-202ENST00000616154 ARL17AQ8IVW1 177 aa11.39□□□□□ -0.59
CDX1-202ENST00000616154 MIR7-3HGQ8N6C7 128 aa11.38□□□□□ -0.59
CDX1-202ENST00000616154 SPANXDQ9BXN6 97 aa11.38□□□□□ -0.59
CDX1-202ENST00000616154 SPANXB1Q9NS25 103 aaPredicted RBP11.38□□□□□ -0.59
CDX1-202ENST00000616154 SPANXCQ9NY87 97 aa11.38□□□□□ -0.59
CDX1-202ENST00000616154 UQCR10Q9UDW1 63 aa11.38□□□□□ -0.59
CDX1-202ENST00000616154 TMEM238C9JI98 176 aa11.37□□□□□ -0.59
CDX1-202ENST00000616154 LBHQ53QV2 105 aaPredicted RBP11.37□□□□□ -0.59
CDX1-202ENST00000616154 PPDPFQ9H3Y8 114 aa11.37□□□□□ -0.59
CDX1-202ENST00000616154 SND1-IT1Q9HBX3 110 aa11.37□□□□□ -0.59
CDX1-202ENST00000616154 IGLV5-37A0A075B6J1 123 aa11.36□□□□□ -0.59
CDX1-202ENST00000616154 Q6ZVH6 145 aa11.36□□□□□ -0.59
CDX1-202ENST00000616154 A0A0U1RRA0 63 aa11.35□□□□□ -0.59
CDX1-202ENST00000616154 MIEN1Q9BRT3 115 aa11.35□□□□□ -0.59
CDX1-202ENST00000616154 PRO1933Q9H354 126 aa11.35□□□□□ -0.59
CDX1-202ENST00000616154 MRPL55Q7Z7F7 128 aaKnown RBP11.35□□□□□ -0.59
CDX1-202ENST00000616154 DAND5Q8N907 189 aa11.35□□□□□ -0.59
CDX1-202ENST00000616154 RPL13AP40429 203 aaKnown RBP11.34□□□□□ -0.59
CDX1-202ENST00000616154 SOSTDC1Q6X4U4 206 aa11.34□□□□□ -0.59
CDX1-202ENST00000616154 EIF4EBP3O60516 100 aaPredicted RBP11.33□□□□□ -0.6
CDX1-202ENST00000616154 IFITM1P13164 125 aa11.32□□□□□ -0.6
CDX1-202ENST00000616154 LINC00308Q8TCZ7 52 aa11.32□□□□□ -0.6
CDX1-202ENST00000616154 TSTD3H0UI37 97 aa11.31□□□□□ -0.6
CDX1-202ENST00000616154 ZNF861PO60384 105 aa11.31□□□□□ -0.6
CDX1-202ENST00000616154 TAL2Q16559 108 aa11.29□□□□□ -0.6
CDX1-202ENST00000616154 Q8NDZ9 215 aa11.29□□□□□ -0.6
CDX1-202ENST00000616154 LINC00167Q96N53 147 aa11.29□□□□□ -0.6
CDX1-202ENST00000616154 VPREB1P12018 145 aa11.28□□□□□ -0.6
CDX1-202ENST00000616154 COPS9Q8WXC6 57 aa11.28□□□□□ -0.6
CDX1-202ENST00000616154 BCE1O60756 84 aa11.27□□□□□ -0.61
CDX1-202ENST00000616154 NDUFC2O95298 119 aa11.27□□□□□ -0.61
CDX1-202ENST00000616154 MUSTN1Q8IVN3 82 aa11.27□□□□□ -0.61
CDX1-202ENST00000616154 PRR4Q16378 134 aa11.26□□□□□ -0.61
CDX1-202ENST00000616154 HIST1H4GQ99525 98 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms