RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 C6orf48Q9UBA6 75 aa13.16□□□□□ -0.3
CLIP3-206ENST00000593074 C15orf53Q8NAA6 179 aa13.15□□□□□ -0.3
CLIP3-206ENST00000593074 NCR3O14931 201 aa13.13□□□□□ -0.31
CLIP3-206ENST00000593074 LECT2O14960 151 aa13.12□□□□□ -0.31
CLIP3-206ENST00000593074 C15orf56Q8N910 161 aa13.12□□□□□ -0.31
CLIP3-206ENST00000593074 ZNF561-AS1K7EIQ3 104 aa13.11□□□□□ -0.31
CLIP3-206ENST00000593074 MGAM2Q2M2H8 2515 aa13.11□□□□□ -0.31
CLIP3-206ENST00000593074 DNAH10OSP0CZ25 163 aa13.11□□□□□ -0.31
CLIP3-206ENST00000593074 HIGD2BQ4VC39 106 aa13.11□□□□□ -0.31
CLIP3-206ENST00000593074 C1orf43Q9BWL3 253 aa13.11□□□□□ -0.31
CLIP3-206ENST00000593074 A0A1B0GX51 115 aa13.09□□□□□ -0.31
CLIP3-206ENST00000593074 CAMK2N2Q96S95 79 aa13.09□□□□□ -0.31
CLIP3-206ENST00000593074 C2orf48Q96LS8 159 aa13.08□□□□□ -0.32
CLIP3-206ENST00000593074 LINC00167Q96N53 147 aa13.08□□□□□ -0.32
CLIP3-206ENST00000593074 S100A7L2Q5SY68 101 aa13.08□□□□□ -0.32
CLIP3-206ENST00000593074 INAFM2P0DMQ5 153 aa13.07□□□□□ -0.32
CLIP3-206ENST00000593074 HUWE1Q7Z6Z7 4374 aaKnown RBP13.07□□□□□ -0.32
CLIP3-206ENST00000593074 IGLV6-57P01721 117 aa13.06□□□□□ -0.32
CLIP3-206ENST00000593074 LINC00588Q9Y4M8 146 aa13.06□□□□□ -0.32
CLIP3-206ENST00000593074 IGKV2D-24A0A075B6R9 120 aa13.05□□□□□ -0.32
CLIP3-206ENST00000593074 ACYP1P07311 99 aa13.05□□□□□ -0.32
CLIP3-206ENST00000593074 C6orf99Q4VX62 202 aa13.05□□□□□ -0.32
CLIP3-206ENST00000593074 Q6ZRU5 148 aa13.05□□□□□ -0.32
CLIP3-206ENST00000593074 F8WDY8 70 aa13.04□□□□□ -0.32
CLIP3-206ENST00000593074 RPL18AQ02543 176 aaKnown RBP13.04□□□□□ -0.32
CLIP3-206ENST00000593074 Q8N814 137 aa13.04□□□□□ -0.32
CLIP3-206ENST00000593074 OBSCN-AS1Q96MR7 158 aa13.04□□□□□ -0.32
CLIP3-206ENST00000593074 ORMDL1Q9P0S3 153 aa13.04□□□□□ -0.32
CLIP3-206ENST00000593074 SNCGO76070 127 aa13.03□□□□□ -0.32
CLIP3-206ENST00000593074 XAGE1AQ9HD64 81 aa13.03□□□□□ -0.32
CLIP3-206ENST00000593074 SLPIP03973 132 aa13.03□□□□□ -0.32
CLIP3-206ENST00000593074 C9orf129Q5T035 196 aaKnown RBP13.01□□□□□ -0.33
CLIP3-206ENST00000593074 NDUFC2-KCTD14E9PQ53 114 aa13□□□□□ -0.33
CLIP3-206ENST00000593074 B9D2Q9BPU9 175 aa12.99□□□□□ -0.33
CLIP3-206ENST00000593074 LINC00575Q6W349 94 aa12.98□□□□□ -0.33
CLIP3-206ENST00000593074 VPREB1P12018 145 aa12.98□□□□□ -0.33
CLIP3-206ENST00000593074 TRBV10-3A0A0K0K1G6 114 aa12.97□□□□□ -0.33
CLIP3-206ENST00000593074 TTC32Q5I0X7 151 aa12.97□□□□□ -0.33
CLIP3-206ENST00000593074 SDIM1Q6ZPB5 146 aa12.97□□□□□ -0.33
CLIP3-206ENST00000593074 SYCNQ0VAF6 134 aa12.95□□□□□ -0.34
CLIP3-206ENST00000593074 Q6Q795 121 aa12.95□□□□□ -0.34
CLIP3-206ENST00000593074 UPK3BQ9BT76 320 aa12.95□□□□□ -0.34
CLIP3-206ENST00000593074 C14orf132Q9NPU4 83 aa12.95□□□□□ -0.34
CLIP3-206ENST00000593074 TRAV23DV6A0A075B6W5 121 aa12.95□□□□□ -0.34
CLIP3-206ENST00000593074 TMEM256-PLSCR3K7ERE1 68 aa12.94□□□□□ -0.34
CLIP3-206ENST00000593074 GAGE2BQ13066 116 aa12.94□□□□□ -0.34
CLIP3-206ENST00000593074 GAGE2EQ4V326 116 aa12.94□□□□□ -0.34
CLIP3-206ENST00000593074 GAGE2AQ6NT46 116 aa12.94□□□□□ -0.34
CLIP3-206ENST00000593074 GAGE2DQ9UEU5 116 aa12.94□□□□□ -0.34
CLIP3-206ENST00000593074 Q6ZRP5 223 aa12.93□□□□□ -0.34
CLIP3-206ENST00000593074 SMCR5Q8TEV8 140 aa12.93□□□□□ -0.34
CLIP3-206ENST00000593074 DNAH1Q9P2D7 4330 aa12.93□□□□□ -0.34
CLIP3-206ENST00000593074 hADV29S1A0JD25 119 aa12.92□□□□□ -0.34
CLIP3-206ENST00000593074 DIRC1Q969H9 104 aa12.92□□□□□ -0.34
CLIP3-206ENST00000593074 M0R378 163 aa12.91□□□□□ -0.34
CLIP3-206ENST00000593074 RMI2Q96E14 147 aa12.9□□□□□ -0.34
CLIP3-206ENST00000593074 ZNF73O43830 326 aaPredicted RBP12.9□□□□□ -0.34
CLIP3-206ENST00000593074 TRBV7-7A0A0K0K1E9 115 aa12.89□□□□□ -0.35
CLIP3-206ENST00000593074 JMJD7-PLA2G4BH0Y9G9 81 aa12.89□□□□□ -0.35
CLIP3-206ENST00000593074 LINC00643Q86TS7 51 aa12.89□□□□□ -0.35
CLIP3-206ENST00000593074 A0A1B0GV72 72 aa12.89□□□□□ -0.35
CLIP3-206ENST00000593074 TRBV7-6A0A0J9YX20 115 aa12.88□□□□□ -0.35
CLIP3-206ENST00000593074 USP17L23D6RBM5 183 aa12.88□□□□□ -0.35
CLIP3-206ENST00000593074 TLX1NBP0CAT3 122 aa12.87□□□□□ -0.35
CLIP3-206ENST00000593074 CASC10Q5T4H9 136 aa12.87□□□□□ -0.35
CLIP3-206ENST00000593074 NHLRC4P0CG21 123 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-206ENST00000593074 ELOF1P60002 83 aaKnown RBP12.86□□□□□ -0.35
CLIP3-206ENST00000593074 APLNQ9ULZ1 77 aa12.85□□□□□ -0.35
CLIP3-206ENST00000593074 COX7BP24311 80 aa12.84□□□□□ -0.35
CLIP3-206ENST00000593074 COL7A1Q02388 2944 aa12.83□□□□□ -0.36
CLIP3-206ENST00000593074 DNAH9Q9NYC9 4486 aa12.83□□□□□ -0.36
CLIP3-206ENST00000593074 IMUPQ9GZP8 106 aa12.83□□□□□ -0.36
CLIP3-206ENST00000593074 CCKP06307 115 aa12.82□□□□□ -0.36
CLIP3-206ENST00000593074 Q6ZQY7 126 aa12.82□□□□□ -0.36
CLIP3-206ENST00000593074 STAB2Q8WWQ8 2551 aa12.82□□□□□ -0.36
CLIP3-206ENST00000593074 H3BQ85 93 aa12.82□□□□□ -0.36
CLIP3-206ENST00000593074 UBE2DNLQ8IWF7 75 aa12.82□□□□□ -0.36
CLIP3-206ENST00000593074 NDUFV3P56181 108 aaKnown RBP12.81□□□□□ -0.36
CLIP3-206ENST00000593074 LINC00846Q9NV44 126 aa12.8□□□□□ -0.36
CLIP3-206ENST00000593074 PLA2G2DQ9UNK4 145 aa12.8□□□□□ -0.36
CLIP3-206ENST00000593074 SERTAD4-AS1Q5TG53 156 aa12.79□□□□□ -0.36
CLIP3-206ENST00000593074 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-206ENST00000593074 ANAPC13Q9BS18 74 aa12.79□□□□□ -0.36
CLIP3-206ENST00000593074 NKAPP1Q8N9T2 125 aa12.78□□□□□ -0.36
CLIP3-206ENST00000593074 LINC00528Q8N1L1 170 aa12.77□□□□□ -0.36
CLIP3-206ENST00000593074 KCNQ1DNQ9H478 68 aa12.77□□□□□ -0.37
CLIP3-206ENST00000593074 C7orf33Q8WU49 177 aa12.76□□□□□ -0.37
CLIP3-206ENST00000593074 KRTAP1-5Q9BYS1 174 aa12.76□□□□□ -0.37
CLIP3-206ENST00000593074 IGLV5-37A0A075B6J1 123 aa12.75□□□□□ -0.37
CLIP3-206ENST00000593074 NUPR2A6NF83 97 aa12.75□□□□□ -0.37
CLIP3-206ENST00000593074 RBM3P98179 157 aaKnown RBP12.74□□□□□ -0.37
CLIP3-206ENST00000593074 LOC110117498A0A087WWA1 95 aa12.74□□□□□ -0.37
CLIP3-206ENST00000593074 LAMTOR3Q9UHA4 124 aa12.74□□□□□ -0.37
CLIP3-206ENST00000593074 DYNC2H1Q8NCM8 4307 aaKnown RBP12.73□□□□□ -0.37
CLIP3-206ENST00000593074 GHRHP01286 108 aa12.73□□□□□ -0.37
CLIP3-206ENST00000593074 Q6ZQT0 140 aa12.73□□□□□ -0.37
CLIP3-206ENST00000593074 Q6JHZ5 121 aa12.72□□□□□ -0.37
CLIP3-206ENST00000593074 LYSTQ99698 3801 aa12.71□□□□□ -0.38
CLIP3-206ENST00000593074 LOC107984640A0A0U1RRK4 108 aa12.7□□□□□ -0.38
CLIP3-206ENST00000593074 FAM168BA1KXE4 195 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms