RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 GCN1Q92616 2671 aaKnown RBP5.03□□□□□ -1.6
ZNF540-206ENST00000589117 H3BQ85 93 aa5.02□□□□□ -1.61
ZNF540-206ENST00000589117 NBEAL2Q6ZNJ1 2754 aa5.02□□□□□ -1.61
ZNF540-206ENST00000589117 CYSRT1A8MQ03 144 aa5.02□□□□□ -1.61
ZNF540-206ENST00000589117 Q8N814 137 aa5.02□□□□□ -1.61
ZNF540-206ENST00000589117 GVQW2A0A096LPI5 108 aaPredicted RBP5.01□□□□□ -1.61
ZNF540-206ENST00000589117 SDIM1Q6ZPB5 146 aa5.01□□□□□ -1.61
ZNF540-206ENST00000589117 OBSCN-AS1Q96MR7 158 aa5.01□□□□□ -1.61
ZNF540-206ENST00000589117 OTOGQ6ZRI0 2925 aa5.01□□□□□ -1.61
ZNF540-206ENST00000589117 HECTD1Q9ULT8 2610 aa5.01□□□□□ -1.61
ZNF540-206ENST00000589117 C9orf116Q5BN46 136 aaPredicted RBP5.01□□□□□ -1.61
ZNF540-206ENST00000589117 UNQ6190/PRO20217Q6UXQ8 127 aa5.01□□□□□ -1.61
ZNF540-206ENST00000589117 C22orf24Q9Y442 160 aa5.01□□□□□ -1.61
ZNF540-206ENST00000589117 PRR3P79522 188 aaKnown RBP5□□□□□ -1.61
ZNF540-206ENST00000589117 KPRPQ5T749 579 aaPredicted RBP5□□□□□ -1.61
ZNF540-206ENST00000589117 ENHOQ6UWT2 76 aa5□□□□□ -1.61
ZNF540-206ENST00000589117 LINC00167Q96N53 147 aa5□□□□□ -1.61
ZNF540-206ENST00000589117 C14orf132Q9NPU4 83 aa5□□□□□ -1.61
ZNF540-206ENST00000589117 NSD1Q96L73 2696 aaPredicted RBP5□□□□□ -1.61
ZNF540-206ENST00000589117 C6orf99Q4VX62 202 aa5□□□□□ -1.61
ZNF540-206ENST00000589117 C3orf56Q8N813 242 aa5□□□□□ -1.61
ZNF540-206ENST00000589117 NCR3O14931 201 aa4.99□□□□□ -1.61
ZNF540-206ENST00000589117 SLPIP03973 132 aa4.99□□□□□ -1.61
ZNF540-206ENST00000589117 F8WDY8 70 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 NANOS2P60321 138 aaKnown RBP4.98□□□□□ -1.61
ZNF540-206ENST00000589117 C6orf223Q8N319 242 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 VWFP04275 2813 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 hADV29S1A0JD25 119 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 CCKP06307 115 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 EGFEM1PQ0D2K5 195 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 C10orf25Q5T742 122 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 LINC00575Q6W349 94 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 CAMK2N2Q96S95 79 aa4.98□□□□□ -1.61
ZNF540-206ENST00000589117 FAM236AA0A1B0GUQ0 79 aa4.97□□□□□ -1.61
ZNF540-206ENST00000589117 FAM236BA0A1B0GV22 79 aa4.97□□□□□ -1.61
ZNF540-206ENST00000589117 SMCR5Q8TEV8 140 aa4.97□□□□□ -1.61
ZNF540-206ENST00000589117 TEP1Q99973 2627 aaKnown RBP4.97□□□□□ -1.61
ZNF540-206ENST00000589117 LOC100996750A0A140TA64 210 aa4.97□□□□□ -1.61
ZNF540-206ENST00000589117 IGLV6-57P01721 117 aa4.97□□□□□ -1.61
ZNF540-206ENST00000589117 RPL18AQ02543 176 aaKnown RBP4.97□□□□□ -1.61
ZNF540-206ENST00000589117 KRTAP4-6Q9BYQ5 205 aa4.97□□□□□ -1.61
ZNF540-206ENST00000589117 Q6ZTC4 211 aa4.96□□□□□ -1.61
ZNF540-206ENST00000589117 C11orf45Q8TAV5 145 aa4.96□□□□□ -1.61
ZNF540-206ENST00000589117 C2orf48Q96LS8 159 aa4.96□□□□□ -1.61
ZNF540-206ENST00000589117 ATRQ13535 2644 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 DEFB131BA0A096LNP1 70 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 PDE6GP18545 87 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 KRTAP10-11P60412 298 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 Q6JHZ5 121 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 WFDC10BQ8IUB3 73 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 DIRC1Q969H9 104 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 LINC00526Q96FQ7 95 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 C6orf48Q9UBA6 75 aa4.96□□□□□ -1.62
ZNF540-206ENST00000589117 TRAV23DV6A0A075B6W5 121 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 TRBV7-6A0A0J9YX20 115 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 RBM3P98179 157 aaKnown RBP4.95□□□□□ -1.62
ZNF540-206ENST00000589117 Q75L30 129 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 LAMTOR3Q9UHA4 124 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 TENM1Q9UKZ4 2725 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 HIVEP1P15822 2718 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 LINC01556Q5JQF7 62 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 ATP5EP2Q5VTU8 51 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 UBL5Q9BZL1 73 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 LINC00846Q9NV44 126 aa4.95□□□□□ -1.62
ZNF540-206ENST00000589117 NDUFC2-KCTD14E9PQ53 114 aa4.94□□□□□ -1.62
ZNF540-206ENST00000589117 M0R378 163 aa4.94□□□□□ -1.62
ZNF540-206ENST00000589117 ATOX1O00244 68 aa4.94□□□□□ -1.62
ZNF540-206ENST00000589117 ESRGQ1W209 222 aa4.94□□□□□ -1.62
ZNF540-206ENST00000589117 C9orf129Q5T035 196 aaKnown RBP4.94□□□□□ -1.62
ZNF540-206ENST00000589117 DSCR8Q96T75 97 aa4.94□□□□□ -1.62
ZNF540-206ENST00000589117 RETNQ9HD89 108 aa4.94□□□□□ -1.62
ZNF540-206ENST00000589117 XAGE1AQ9HD64 81 aa4.94□□□□□ -1.62
ZNF540-206ENST00000589117 IGKV2D-24A0A075B6R9 120 aa4.93□□□□□ -1.62
ZNF540-206ENST00000589117 TRBV10-3A0A0K0K1G6 114 aa4.93□□□□□ -1.62
ZNF540-206ENST00000589117 CCDC179H3BU77 68 aa4.93□□□□□ -1.62
ZNF540-206ENST00000589117 ZNF73O43830 326 aaPredicted RBP4.93□□□□□ -1.62
ZNF540-206ENST00000589117 COX7BP24311 80 aa4.93□□□□□ -1.62
ZNF540-206ENST00000589117 HIGD2BQ4VC39 106 aa4.93□□□□□ -1.62
ZNF540-206ENST00000589117 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.93□□□□□ -1.62
ZNF540-206ENST00000589117 UQCRQO14949 82 aa4.92□□□□□ -1.62
ZNF540-206ENST00000589117 KRTAP24-1Q3LI83 254 aa4.92□□□□□ -1.62
ZNF540-206ENST00000589117 Q8NDZ9 215 aa4.92□□□□□ -1.62
ZNF540-206ENST00000589117 LOC110117498A0A087WWA1 95 aa4.92□□□□□ -1.62
ZNF540-206ENST00000589117 Q6ZQY7 126 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 Q6ZRU5 148 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 TRAV10A0A0B4J240 114 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 IGKV3D-7A0A0C4DH55 119 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 ELOF1P60002 83 aaKnown RBP4.91□□□□□ -1.62
ZNF540-206ENST00000589117 SYCNQ0VAF6 134 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 KRTAP26-1Q6PEX3 210 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 C3orf22Q8N5N4 141 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 RMI2Q96E14 147 aa4.91□□□□□ -1.62
ZNF540-206ENST00000589117 DNAH10OSP0CZ25 163 aa4.9□□□□□ -1.62
ZNF540-206ENST00000589117 C15orf56Q8N910 161 aa4.9□□□□□ -1.62
ZNF540-206ENST00000589117 HIST1H4AP62805 103 aaKnown RBP4.9□□□□□ -1.63
ZNF540-206ENST00000589117 C9orf153Q5TBE3 101 aa4.9□□□□□ -1.63
ZNF540-206ENST00000589117 NKAPP1Q8N9T2 125 aa4.9□□□□□ -1.63
ZNF540-206ENST00000589117 COX7CP15954 63 aa4.89□□□□□ -1.63
ZNF540-206ENST00000589117 Q6ZQT0 140 aa4.89□□□□□ -1.63
ZNF540-206ENST00000589117 SS18L2Q9UHA2 77 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms