RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 LINC00336Q6ZUF6 198 aa3.46□□□□□ -1.86
LIG3-210ENST00000588109 LINC00518Q8N0U6 118 aa3.46□□□□□ -1.86
LIG3-210ENST00000588109 TTTY13Q9BZ97 58 aa3.46□□□□□ -1.86
LIG3-210ENST00000588109 DNAH17Q9UFH2 4485 aa3.46□□□□□ -1.86
LIG3-210ENST00000588109 IGLV5-52A0A0A0MRZ9 124 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 TRBV30A0A0K0K1B3 111 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 LINC00587B1AMM8 73 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 TSTD3H0UI37 97 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 PFN2P35080 140 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 LINC00158P58513 81 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 CNBPP62633 177 aaKnown RBP3.45□□□□□ -1.86
LIG3-210ENST00000588109 SLC25A34Q6PIV7 304 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 BOD1L2Q8IYS8 172 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 PRO1933Q9H354 126 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 C6orf48Q9UBA6 75 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 UQCR10Q9UDW1 63 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 ERG28Q9UKR5 140 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 HYDINQ4G0P3 5121 aa3.45□□□□□ -1.86
LIG3-210ENST00000588109 IGKV2D-30A0A075B6S6 120 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 A0A0J9YXY3 114 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 DLEU1O43261 78 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 SMIM13P0DJ93 91 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 FUSP35637 526 aaKnown RBP eCLIP3.44□□□□□ -1.86
LIG3-210ENST00000588109 RPL18AQ02543 176 aaKnown RBP3.44□□□□□ -1.86
LIG3-210ENST00000588109 GAGE2BQ13066 116 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 GAGE2EQ4V326 116 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 C9orf116Q5BN46 136 aaPredicted RBP3.44□□□□□ -1.86
LIG3-210ENST00000588109 GAGE2AQ6NT46 116 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 GAGE2DQ9UEU5 116 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 TP73-AS1Q9UF72 201 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 PKIGQ9Y2B9 76 aa3.44□□□□□ -1.86
LIG3-210ENST00000588109 LOC107984640A0A0U1RRK4 108 aa3.43□□□□□ -1.86
LIG3-210ENST00000588109 TMEM238C9JI98 176 aa3.43□□□□□ -1.86
LIG3-210ENST00000588109 NDUFC2-KCTD14E9PQ53 114 aa3.43□□□□□ -1.86
LIG3-210ENST00000588109 HNRNPA3P51991 378 aaKnown RBP3.43□□□□□ -1.86
LIG3-210ENST00000588109 SRSF9Q13242 221 aaKnown RBP eCLIP3.43□□□□□ -1.86
LIG3-210ENST00000588109 COX17Q14061 63 aa3.43□□□□□ -1.86
LIG3-210ENST00000588109 MIEN1Q9BRT3 115 aa3.43□□□□□ -1.86
LIG3-210ENST00000588109 FRAS1Q86XX4 4008 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 FAT2Q9NYQ8 4349 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 KMT2CQ8NEZ4 4911 aaKnown RBP3.42□□□□□ -1.86
LIG3-210ENST00000588109 TIMM17BO60830 172 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 NPC2P61916 151 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 MIR7-3HGQ8N6C7 128 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 DAND5Q8N907 189 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 C9orf163Q8N9P6 203 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 HIST1H4GQ99525 98 aa3.42□□□□□ -1.86
LIG3-210ENST00000588109 IGKV2-24A0A0C4DH68 120 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 TLX1NBP0CAT3 122 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 VAMP3Q15836 100 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 ADAMTSL4-AS1Q5T5F5 129 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 Q6ZRP5 223 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 C2orf91Q6ZV80 131 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 COPS9Q8WXC6 57 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 DPH3Q96FX2 82 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 SND1-IT1Q9HBX3 110 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 XAGE1AQ9HD64 81 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 HIGD1BQ9P298 99 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 RYR2Q92736 4967 aa3.41□□□□□ -1.86
LIG3-210ENST00000588109 A0A096LNI7 61 aa3.4□□□□□ -1.87
LIG3-210ENST00000588109 C16orf90A8MZG2 172 aa3.4□□□□□ -1.87
LIG3-210ENST00000588109 Q6ZVH6 145 aa3.4□□□□□ -1.87
LIG3-210ENST00000588109 LINC00308Q8TCZ7 52 aa3.4□□□□□ -1.87
LIG3-210ENST00000588109 LITAFQ99732 161 aa3.4□□□□□ -1.87
LIG3-210ENST00000588109 SPANXDQ9BXN6 97 aa3.4□□□□□ -1.87
LIG3-210ENST00000588109 SPANXB1Q9NS25 103 aaPredicted RBP3.4□□□□□ -1.87
LIG3-210ENST00000588109 SPANXCQ9NY87 97 aa3.4□□□□□ -1.87
LIG3-210ENST00000588109 A0A1B0GVY2 172 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 CHTF8P0CG12 524 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 IFITM1P13164 125 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 DDTP30046 118 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 RPL24P83731 157 aaKnown RBP3.39□□□□□ -1.87
LIG3-210ENST00000588109 HSD52Q0P140 79 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 TAL2Q16559 108 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 C5orf47Q569G3 176 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 C9orf129Q5T035 196 aaKnown RBP3.39□□□□□ -1.87
LIG3-210ENST00000588109 SDIM1Q6ZPB5 146 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 MUSTN1Q8IVN3 82 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 LINC00474Q9P2X8 69 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 DNAH11Q96DT5 4516 aa3.39□□□□□ -1.87
LIG3-210ENST00000588109 PKD1P98161 4303 aa3.38□□□□□ -1.87
LIG3-210ENST00000588109 M0R143 59 aa3.38□□□□□ -1.87
LIG3-210ENST00000588109 SOSTDC1Q6X4U4 206 aa3.38□□□□□ -1.87
LIG3-210ENST00000588109 FAM19A5Q7Z5A7 132 aaPredicted RBP3.38□□□□□ -1.87
LIG3-210ENST00000588109 CEND1Q8N111 149 aa3.38□□□□□ -1.87
LIG3-210ENST00000588109 NKAPP1Q8N9T2 125 aa3.38□□□□□ -1.87
LIG3-210ENST00000588109 FAM168BA1KXE4 195 aa3.37□□□□□ -1.87
LIG3-210ENST00000588109 HINT1P49773 126 aaPredicted RBP3.37□□□□□ -1.87
LIG3-210ENST00000588109 KRTAP10-1P60331 282 aa3.37□□□□□ -1.87
LIG3-210ENST00000588109 BATFQ16520 125 aa3.37□□□□□ -1.87
LIG3-210ENST00000588109 PRR26Q8N8Z3 221 aa3.37□□□□□ -1.87
LIG3-210ENST00000588109 SPACA4Q8TDM5 124 aa3.37□□□□□ -1.87
LIG3-210ENST00000588109 RYR3Q15413 4870 aa3.37□□□□□ -1.87
LIG3-210ENST00000588109 DNAH5Q8TE73 4624 aa3.36□□□□□ -1.87
LIG3-210ENST00000588109 LOC107984156A0A0G2JMH3 177 aa3.36□□□□□ -1.87
LIG3-210ENST00000588109 A6NDN8 102 aa3.36□□□□□ -1.87
LIG3-210ENST00000588109 PANO1I0J062 215 aa3.36□□□□□ -1.87
LIG3-210ENST00000588109 M0QXV9 152 aa3.36□□□□□ -1.87
LIG3-210ENST00000588109 NCR3O14931 201 aa3.36□□□□□ -1.87
LIG3-210ENST00000588109 NDUFC2O95298 119 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms