RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 LINC00158P58513 81 aa12.93□□□□□ -0.34
VPS53-210ENST00000571456 A0A1W2PNN7 141 aa12.92□□□□□ -0.34
VPS53-210ENST00000571456 XAGE1AQ9HD64 81 aa12.92□□□□□ -0.34
VPS53-210ENST00000571456 TP73-AS1Q9UF72 201 aa12.91□□□□□ -0.34
VPS53-210ENST00000571456 SCGB1D1O95968 90 aa12.9□□□□□ -0.34
VPS53-210ENST00000571456 SND1-IT1Q9HBX3 110 aa12.9□□□□□ -0.34
VPS53-210ENST00000571456 OXTP01178 125 aa12.89□□□□□ -0.35
VPS53-210ENST00000571456 SMIM13P0DJ93 91 aa12.89□□□□□ -0.35
VPS53-210ENST00000571456 ATOH7Q8N100 152 aa12.89□□□□□ -0.35
VPS53-210ENST00000571456 RPL24P83731 157 aaKnown RBP12.88□□□□□ -0.35
VPS53-210ENST00000571456 LBHQ53QV2 105 aaPredicted RBP12.88□□□□□ -0.35
VPS53-210ENST00000571456 FAM19A5Q7Z5A7 132 aaPredicted RBP12.88□□□□□ -0.35
VPS53-210ENST00000571456 TMA7Q9Y2S6 64 aaKnown RBP12.88□□□□□ -0.35
VPS53-210ENST00000571456 IGLV5-37A0A075B6J1 123 aa12.87□□□□□ -0.35
VPS53-210ENST00000571456 ZNF815PA8K554 130 aa12.87□□□□□ -0.35
VPS53-210ENST00000571456 M0QXV9 152 aa12.87□□□□□ -0.35
VPS53-210ENST00000571456 IGKV2D-26A0A0A0MRZ7 120 aa12.86□□□□□ -0.35
VPS53-210ENST00000571456 A0A0J9YXY3 114 aa12.86□□□□□ -0.35
VPS53-210ENST00000571456 FAM168BA1KXE4 195 aa12.86□□□□□ -0.35
VPS53-210ENST00000571456 TIMM17BO60830 172 aa12.86□□□□□ -0.35
VPS53-210ENST00000571456 RPL37AP61513 92 aaKnown RBP12.86□□□□□ -0.35
VPS53-210ENST00000571456 ANKRD39Q53RE8 183 aa12.86□□□□□ -0.35
VPS53-210ENST00000571456 LRP2P98164 4655 aa12.86□□□□□ -0.35
VPS53-210ENST00000571456 MIR7-3HGQ8N6C7 128 aa12.85□□□□□ -0.35
VPS53-210ENST00000571456 LOC107984156A0A0G2JMH3 177 aa12.84□□□□□ -0.35
VPS53-210ENST00000571456 ARL17AQ8IVW1 177 aa12.84□□□□□ -0.35
VPS53-210ENST00000571456 NKAPP1Q8N9T2 125 aa12.84□□□□□ -0.35
VPS53-210ENST00000571456 JOSD1Q15040 202 aaPredicted RBP12.83□□□□□ -0.36
VPS53-210ENST00000571456 KRTAP7-1Q8IUC3 87 aa12.83□□□□□ -0.36
VPS53-210ENST00000571456 C22orf24Q9Y442 160 aa12.83□□□□□ -0.36
VPS53-210ENST00000571456 A0A0U1RRA0 63 aa12.82□□□□□ -0.36
VPS53-210ENST00000571456 MIEN1Q9BRT3 115 aa12.82□□□□□ -0.36
VPS53-210ENST00000571456 PHF5AQ7RTV0 110 aaKnown RBP12.81□□□□□ -0.36
VPS53-210ENST00000571456 MRPL55Q7Z7F7 128 aaKnown RBP12.81□□□□□ -0.36
VPS53-210ENST00000571456 SCGB1D4Q6XE38 83 aa12.8□□□□□ -0.36
VPS53-210ENST00000571456 TMEM238C9JI98 176 aa12.79□□□□□ -0.36
VPS53-210ENST00000571456 VPREB1P12018 145 aa12.79□□□□□ -0.36
VPS53-210ENST00000571456 UBE2BP63146 152 aa12.79□□□□□ -0.36
VPS53-210ENST00000571456 COPS9Q8WXC6 57 aa12.79□□□□□ -0.36
VPS53-210ENST00000571456 Q6ZVH6 145 aa12.78□□□□□ -0.36
VPS53-210ENST00000571456 PRR3P79522 188 aaKnown RBP12.77□□□□□ -0.37
VPS53-210ENST00000571456 BOD1L2Q8IYS8 172 aa12.77□□□□□ -0.37
VPS53-210ENST00000571456 TTTY13Q9BZ97 58 aa12.76□□□□□ -0.37
VPS53-210ENST00000571456 PPDPFQ9H3Y8 114 aa12.76□□□□□ -0.37
VPS53-210ENST00000571456 NDUFC2O95298 119 aa12.75□□□□□ -0.37
VPS53-210ENST00000571456 KRTAP10-4P60372 401 aaPredicted RBP12.75□□□□□ -0.37
VPS53-210ENST00000571456 PCP2Q8IVA1 136 aa12.75□□□□□ -0.37
VPS53-210ENST00000571456 LITAFQ99732 161 aa12.75□□□□□ -0.37
VPS53-210ENST00000571456 LINC00167Q96N53 147 aa12.74□□□□□ -0.37
VPS53-210ENST00000571456 VAMP8Q9BV40 100 aa12.74□□□□□ -0.37
VPS53-210ENST00000571456 PSORS1C2Q9UIG4 136 aa12.74□□□□□ -0.37
VPS53-210ENST00000571456 PKHD1L1Q86WI1 4243 aa12.73□□□□□ -0.37
VPS53-210ENST00000571456 M0R378 163 aa12.73□□□□□ -0.37
VPS53-210ENST00000571456 ADAMTSL4-AS1Q5T5F5 129 aa12.73□□□□□ -0.37
VPS53-210ENST00000571456 DAND5Q8N907 189 aa12.73□□□□□ -0.37
VPS53-210ENST00000571456 SPANXDQ9BXN6 97 aa12.73□□□□□ -0.37
VPS53-210ENST00000571456 SPANXCQ9NY87 97 aa12.73□□□□□ -0.37
VPS53-210ENST00000571456 TRBV10-2A0A0K0K1G8 114 aa12.72□□□□□ -0.37
VPS53-210ENST00000571456 IFITM1P13164 125 aa12.72□□□□□ -0.37
VPS53-210ENST00000571456 DLEU1O43261 78 aa12.71□□□□□ -0.37
VPS53-210ENST00000571456 COX8AP10176 69 aa12.7□□□□□ -0.38
VPS53-210ENST00000571456 LINC00308Q8TCZ7 52 aa12.7□□□□□ -0.38
VPS53-210ENST00000571456 SPANXB1Q9NS25 103 aaPredicted RBP12.7□□□□□ -0.38
VPS53-210ENST00000571456 S100A12P80511 92 aa12.69□□□□□ -0.38
VPS53-210ENST00000571456 PYY3Q5JQD4 70 aa12.69□□□□□ -0.38
VPS53-210ENST00000571456 C1orf137Q5JT78 98 aa12.69□□□□□ -0.38
VPS53-210ENST00000571456 IGLV1-50A0A075B6I6 118 aa12.68□□□□□ -0.38
VPS53-210ENST00000571456 SPATA45Q537H7 98 aa12.68□□□□□ -0.38
VPS53-210ENST00000571456 Q8NDZ9 215 aa12.67□□□□□ -0.38
VPS53-210ENST00000571456 PAM16Q9Y3D7 125 aa12.67□□□□□ -0.38
VPS53-210ENST00000571456 CBY1Q9Y3M2 126 aa12.67□□□□□ -0.38
VPS53-210ENST00000571456 GAGE10A6NGK3 116 aa12.66□□□□□ -0.38
VPS53-210ENST00000571456 SPINK6Q6UWN8 80 aa12.66□□□□□ -0.38
VPS53-210ENST00000571456 RPL37AP8A6NKH3 93 aa12.65□□□□□ -0.38
VPS53-210ENST00000571456 SOSTDC1Q6X4U4 206 aa12.65□□□□□ -0.38
VPS53-210ENST00000571456 LINC00518Q8N0U6 118 aa12.65□□□□□ -0.38
VPS53-210ENST00000571456 IGLV7-43P04211 117 aa12.64□□□□□ -0.39
VPS53-210ENST00000571456 KRTAP11-1Q8IUC1 163 aa12.64□□□□□ -0.39
VPS53-210ENST00000571456 BCE1O60756 84 aa12.63□□□□□ -0.39
VPS53-210ENST00000571456 SRSF9Q13242 221 aaKnown RBP eCLIP12.63□□□□□ -0.39
VPS53-210ENST00000571456 IGKV2-28A0A075B6P5 120 aa12.62□□□□□ -0.39
VPS53-210ENST00000571456 NCR3O14931 201 aa12.62□□□□□ -0.39
VPS53-210ENST00000571456 IGKV2D-28P01615 120 aa12.62□□□□□ -0.39
VPS53-210ENST00000571456 NPC2P61916 151 aa12.62□□□□□ -0.39
VPS53-210ENST00000571456 SLC25A34Q6PIV7 304 aa12.62□□□□□ -0.39
VPS53-210ENST00000571456 PRYO14603 147 aa12.61□□□□□ -0.39
VPS53-210ENST00000571456 REG3GQ6UW15 175 aa12.61□□□□□ -0.39
VPS53-210ENST00000571456 S100A7L2Q5SY68 101 aa12.6□□□□□ -0.39
VPS53-210ENST00000571456 KCNQ1DNQ9H478 68 aa12.6□□□□□ -0.39
VPS53-210ENST00000571456 HIGD1BQ9P298 99 aa12.6□□□□□ -0.39
VPS53-210ENST00000571456 TNXBP22105 4242 aa12.59□□□□□ -0.39
VPS53-210ENST00000571456 DDTP30046 118 aa12.59□□□□□ -0.39
VPS53-210ENST00000571456 RPL28P46779 137 aaKnown RBP12.59□□□□□ -0.39
VPS53-210ENST00000571456 DIRC1Q969H9 104 aa12.59□□□□□ -0.39
VPS53-210ENST00000571456 TMEM126AQ9H061 195 aa12.59□□□□□ -0.39
VPS53-210ENST00000571456 ZNF861PO60384 105 aa12.58□□□□□ -0.4
VPS53-210ENST00000571456 EIF4EBP3O60516 100 aaPredicted RBP12.58□□□□□ -0.4
VPS53-210ENST00000571456 C14orf144Q96I85 54 aa12.58□□□□□ -0.4
VPS53-210ENST00000571456 TRBV10-3A0A0K0K1G6 114 aa12.57□□□□□ -0.4
VPS53-210ENST00000571456 IGLV6-57P01721 117 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms