RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 KRTAP11-1Q8IUC1 163 aa5.82□□□□□ -1.48
VPS35-211ENST00000569950 KRTAP4-5Q9BYR2 181 aa5.82□□□□□ -1.48
VPS35-211ENST00000569950 GAGE2DQ9UEU5 116 aa5.82□□□□□ -1.48
VPS35-211ENST00000569950 MYMXA0A1B0GTQ4 84 aa5.81□□□□□ -1.48
VPS35-211ENST00000569950 LOC105371267A0A1B0GV96 52 aa5.81□□□□□ -1.48
VPS35-211ENST00000569950 LGALS3P17931 250 aaKnown RBP5.81□□□□□ -1.48
VPS35-211ENST00000569950 PFN2P35080 140 aa5.81□□□□□ -1.48
VPS35-211ENST00000569950 HERV-K104P63124 156 aa5.81□□□□□ -1.48
VPS35-211ENST00000569950 COX17Q14061 63 aa5.81□□□□□ -1.48
VPS35-211ENST00000569950 SFTA2Q6UW10 78 aa5.81□□□□□ -1.48
VPS35-211ENST00000569950 SND1-IT1Q9HBX3 110 aa5.81□□□□□ -1.48
VPS35-211ENST00000569950 A0A0U1RRA0 63 aa5.8□□□□□ -1.48
VPS35-211ENST00000569950 SMR3BP02814 79 aaPredicted RBP5.8□□□□□ -1.48
VPS35-211ENST00000569950 AKR1D1P51857 326 aa5.8□□□□□ -1.48
VPS35-211ENST00000569950 SOSTDC1Q6X4U4 206 aa5.8□□□□□ -1.48
VPS35-211ENST00000569950 LOC107984156A0A0G2JMH3 177 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 VPREB1P12018 145 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 ARL17AQ8IVW1 177 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 MIR7-3HGQ8N6C7 128 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 DAND5Q8N907 189 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 LINC00474Q9P2X8 69 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 PLA2G2DQ9UNK4 145 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 PKIGQ9Y2B9 76 aa5.79□□□□□ -1.48
VPS35-211ENST00000569950 IGLV5-37A0A075B6J1 123 aa5.78□□□□□ -1.48
VPS35-211ENST00000569950 ZNF815PA8K554 130 aa5.78□□□□□ -1.48
VPS35-211ENST00000569950 PHF5AQ7RTV0 110 aaKnown RBP5.78□□□□□ -1.48
VPS35-211ENST00000569950 TIMM17BO60830 172 aa5.77□□□□□ -1.49
VPS35-211ENST00000569950 LINC00158P58513 81 aa5.77□□□□□ -1.49
VPS35-211ENST00000569950 FAM19A5Q7Z5A7 132 aaPredicted RBP5.77□□□□□ -1.49
VPS35-211ENST00000569950 BOD1L2Q8IYS8 172 aa5.77□□□□□ -1.49
VPS35-211ENST00000569950 Q8N1X5 172 aa5.77□□□□□ -1.49
VPS35-211ENST00000569950 MYCBP2O75592 4640 aa5.77□□□□□ -1.49
VPS35-211ENST00000569950 FLG2Q5D862 2391 aaPredicted RBP5.76□□□□□ -1.49
VPS35-211ENST00000569950 MEIG1Q5JSS6 88 aa5.76□□□□□ -1.49
VPS35-211ENST00000569950 PAM16Q9Y3D7 125 aa5.76□□□□□ -1.49
VPS35-211ENST00000569950 M0QXV9 152 aa5.75□□□□□ -1.49
VPS35-211ENST00000569950 COX8AP10176 69 aa5.75□□□□□ -1.49
VPS35-211ENST00000569950 HNRNPA3P51991 378 aaKnown RBP5.75□□□□□ -1.49
VPS35-211ENST00000569950 PRR3P79522 188 aaKnown RBP5.75□□□□□ -1.49
VPS35-211ENST00000569950 SPATA45Q537H7 98 aa5.75□□□□□ -1.49
VPS35-211ENST00000569950 C2orf91Q6ZV80 131 aa5.75□□□□□ -1.49
VPS35-211ENST00000569950 C22orf24Q9Y442 160 aa5.75□□□□□ -1.49
VPS35-211ENST00000569950 PCLOQ9Y6V0 5065 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 DLEU1O43261 78 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 Q5VSD8 79 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 LINC00308Q8TCZ7 52 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 C7orf33Q8WU49 177 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 C14orf144Q96I85 54 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 VAMP8Q9BV40 100 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 SPANXDQ9BXN6 97 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 SPANXCQ9NY87 97 aa5.74□□□□□ -1.49
VPS35-211ENST00000569950 LRP1Q07954 4544 aaKnown RBP5.74□□□□□ -1.49
VPS35-211ENST00000569950 LINC00587B1AMM8 73 aa5.73□□□□□ -1.49
VPS35-211ENST00000569950 HSBP1L1C9JCN9 74 aa5.73□□□□□ -1.49
VPS35-211ENST00000569950 DPH3Q96FX2 82 aa5.73□□□□□ -1.49
VPS35-211ENST00000569950 LINC00167Q96N53 147 aa5.73□□□□□ -1.49
VPS35-211ENST00000569950 IGKV2-28A0A075B6P5 120 aa5.72□□□□□ -1.49
VPS35-211ENST00000569950 IGKV2D-28P01615 120 aa5.72□□□□□ -1.49
VPS35-211ENST00000569950 NPC2P61916 151 aa5.72□□□□□ -1.49
VPS35-211ENST00000569950 MRPL55Q7Z7F7 128 aaKnown RBP5.72□□□□□ -1.49
VPS35-211ENST00000569950 PPDPFQ9H3Y8 114 aa5.72□□□□□ -1.49
VPS35-211ENST00000569950 SPANXB1Q9NS25 103 aaPredicted RBP5.72□□□□□ -1.49
VPS35-211ENST00000569950 PSORS1C2Q9UIG4 136 aa5.72□□□□□ -1.49
VPS35-211ENST00000569950 FAT3Q8TDW7 4589 aa5.72□□□□□ -1.49
VPS35-211ENST00000569950 IGLV1-50A0A075B6I6 118 aa5.7□□□□□ -1.5
VPS35-211ENST00000569950 GAGE10A6NGK3 116 aa5.7□□□□□ -1.5
VPS35-211ENST00000569950 NDUFC2O95298 119 aa5.7□□□□□ -1.5
VPS35-211ENST00000569950 SMIM6P0DI80 62 aa5.7□□□□□ -1.5
VPS35-211ENST00000569950 SCGB1D4Q6XE38 83 aa5.7□□□□□ -1.5
VPS35-211ENST00000569950 RPL37AP8A6NKH3 93 aa5.69□□□□□ -1.5
VPS35-211ENST00000569950 TMEM238C9JI98 176 aa5.69□□□□□ -1.5
VPS35-211ENST00000569950 NCR3O14931 201 aa5.69□□□□□ -1.5
VPS35-211ENST00000569950 RPL37AP61513 92 aaKnown RBP5.69□□□□□ -1.5
VPS35-211ENST00000569950 MUSTN1Q8IVN3 82 aa5.69□□□□□ -1.5
VPS35-211ENST00000569950 HIGD1BQ9P298 99 aa5.69□□□□□ -1.5
VPS35-211ENST00000569950 KRTAP4-16G5E9R7 235 aaPredicted RBP5.68□□□□□ -1.5
VPS35-211ENST00000569950 M0R378 163 aa5.68□□□□□ -1.5
VPS35-211ENST00000569950 IGLV6-57P01721 117 aa5.68□□□□□ -1.5
VPS35-211ENST00000569950 RPL24P83731 157 aaKnown RBP5.68□□□□□ -1.5
VPS35-211ENST00000569950 SRSF9Q13242 221 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS35-211ENST00000569950 SLC25A34Q6PIV7 304 aa5.68□□□□□ -1.5
VPS35-211ENST00000569950 Q6ZVH6 145 aa5.68□□□□□ -1.5
VPS35-211ENST00000569950 KRTAP13-1Q8IUC0 172 aa5.68□□□□□ -1.5
VPS35-211ENST00000569950 LINC00337Q8N6G1 96 aa5.68□□□□□ -1.5
VPS35-211ENST00000569950 SVIPQ8NHG7 77 aa5.68□□□□□ -1.5
VPS35-211ENST00000569950 TRBV10-3A0A0K0K1G6 114 aa5.67□□□□□ -1.5
VPS35-211ENST00000569950 TRBV10-2A0A0K0K1G8 114 aa5.67□□□□□ -1.5
VPS35-211ENST00000569950 IFITM1P13164 125 aa5.67□□□□□ -1.5
VPS35-211ENST00000569950 LBHQ53QV2 105 aaPredicted RBP5.67□□□□□ -1.5
VPS35-211ENST00000569950 NKAPP1Q8N9T2 125 aa5.67□□□□□ -1.5
VPS35-211ENST00000569950 FAM229AH3BQW9 127 aa5.66□□□□□ -1.5
VPS35-211ENST00000569950 SPRR1AP35321 89 aa5.66□□□□□ -1.5
VPS35-211ENST00000569950 KCNQ1DNQ9H478 68 aa5.66□□□□□ -1.5
VPS35-211ENST00000569950 PLA2G1BP04054 148 aaKnown RBP5.65□□□□□ -1.5
VPS35-211ENST00000569950 IGLV7-43P04211 117 aa5.65□□□□□ -1.5
VPS35-211ENST00000569950 TMEM126AQ9H061 195 aa5.65□□□□□ -1.5
VPS35-211ENST00000569950 PRO1933Q9H354 126 aa5.65□□□□□ -1.5
VPS35-211ENST00000569950 TNXBP22105 4242 aa5.64□□□□□ -1.51
VPS35-211ENST00000569950 A4D1N5 150 aa5.64□□□□□ -1.51
VPS35-211ENST00000569950 UBE2BP63146 152 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms