RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 V9GYY9 64 aa4.96□□□□□ -1.62
VPS13C-206ENST00000558338 HELZ2Q9BYK8 2649 aaKnown RBP4.95□□□□□ -1.62
VPS13C-206ENST00000558338 IGLV10-54A0A075B6I4 117 aa4.95□□□□□ -1.62
VPS13C-206ENST00000558338 A0A087WYN8 130 aa4.95□□□□□ -1.62
VPS13C-206ENST00000558338 TTC32Q5I0X7 151 aa4.95□□□□□ -1.62
VPS13C-206ENST00000558338 PRR26Q8N8Z3 221 aa4.95□□□□□ -1.62
VPS13C-206ENST00000558338 IMUPQ9GZP8 106 aa4.95□□□□□ -1.62
VPS13C-206ENST00000558338 TRBV7-7A0A0K0K1E9 115 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 LINC00643Q86TS7 51 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 Q9HAA7 133 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 ORMDL1Q9P0S3 153 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 GVQW2A0A096LPI5 108 aaPredicted RBP4.94□□□□□ -1.62
VPS13C-206ENST00000558338 A0A0J9YWU9 116 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 LECT2O14960 151 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 LYPD5Q6UWN5 251 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 LINC00336Q6ZUF6 198 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 LINC00167Q96N53 147 aa4.94□□□□□ -1.62
VPS13C-206ENST00000558338 SETD2Q9BYW2 2564 aaPredicted RBP4.94□□□□□ -1.62
VPS13C-206ENST00000558338 NDUFV3P56181 108 aaKnown RBP4.93□□□□□ -1.62
VPS13C-206ENST00000558338 KLK12Q9UKR0 248 aa4.93□□□□□ -1.62
VPS13C-206ENST00000558338 C22orf24Q9Y442 160 aa4.93□□□□□ -1.62
VPS13C-206ENST00000558338 C2CD3Q4AC94 2353 aa4.93□□□□□ -1.62
VPS13C-206ENST00000558338 EGFEM1PQ0D2K5 195 aa4.92□□□□□ -1.62
VPS13C-206ENST00000558338 S100A7L2Q5SY68 101 aa4.92□□□□□ -1.62
VPS13C-206ENST00000558338 OBSCN-AS1Q96MR7 158 aa4.92□□□□□ -1.62
VPS13C-206ENST00000558338 JMJD7-PLA2G4BH0Y9G9 81 aa4.92□□□□□ -1.62
VPS13C-206ENST00000558338 H3BQ85 93 aa4.92□□□□□ -1.62
VPS13C-206ENST00000558338 ENHOQ6UWT2 76 aa4.92□□□□□ -1.62
VPS13C-206ENST00000558338 SDIM1Q6ZPB5 146 aa4.92□□□□□ -1.62
VPS13C-206ENST00000558338 TMEM256-PLSCR3K7ERE1 68 aa4.91□□□□□ -1.62
VPS13C-206ENST00000558338 NANOS2P60321 138 aaKnown RBP4.91□□□□□ -1.62
VPS13C-206ENST00000558338 KPRPQ5T749 579 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-206ENST00000558338 RETNQ9HD89 108 aa4.91□□□□□ -1.62
VPS13C-206ENST00000558338 NSD1Q96L73 2696 aaPredicted RBP4.9□□□□□ -1.62
VPS13C-206ENST00000558338 CYSRT1A8MQ03 144 aa4.9□□□□□ -1.62
VPS13C-206ENST00000558338 NCR3O14931 201 aa4.9□□□□□ -1.62
VPS13C-206ENST00000558338 UNQ6190/PRO20217Q6UXQ8 127 aa4.9□□□□□ -1.62
VPS13C-206ENST00000558338 Q8N814 137 aa4.9□□□□□ -1.62
VPS13C-206ENST00000558338 FN1P02751 2386 aaKnown RBP4.9□□□□□ -1.62
VPS13C-206ENST00000558338 NIPBLQ6KC79 2804 aaeCLIP4.9□□□□□ -1.62
VPS13C-206ENST00000558338 OTOGQ6ZRI0 2925 aa4.9□□□□□ -1.63
VPS13C-206ENST00000558338 C9orf116Q5BN46 136 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-206ENST00000558338 NOTCH2Q04721 2471 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 KRTAP10-11P60412 298 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 C6orf99Q4VX62 202 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 C10orf25Q5T742 122 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 C6orf223Q8N319 242 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 C3orf56Q8N813 242 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 C2orf48Q96LS8 159 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 C14orf132Q9NPU4 83 aa4.89□□□□□ -1.63
VPS13C-206ENST00000558338 IGLV6-57P01721 117 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 LCE5AQ5TCM9 118 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 Q6ZTC4 211 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 SMCR5Q8TEV8 140 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 PRR3P79522 188 aaKnown RBP4.88□□□□□ -1.63
VPS13C-206ENST00000558338 KRTAP24-1Q3LI83 254 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 LINC01556Q5JQF7 62 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 LINC00575Q6W349 94 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 WFDC10BQ8IUB3 73 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 C6orf48Q9UBA6 75 aa4.88□□□□□ -1.63
VPS13C-206ENST00000558338 GCN1Q92616 2671 aaKnown RBP4.87□□□□□ -1.63
VPS13C-206ENST00000558338 hADV29S1A0JD25 119 aa4.87□□□□□ -1.63
VPS13C-206ENST00000558338 SLPIP03973 132 aa4.87□□□□□ -1.63
VPS13C-206ENST00000558338 CCKP06307 115 aa4.87□□□□□ -1.63
VPS13C-206ENST00000558338 NHLRC4P0CG21 123 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-206ENST00000558338 Q6JHZ5 121 aa4.87□□□□□ -1.63
VPS13C-206ENST00000558338 CAMK2N2Q96S95 79 aa4.87□□□□□ -1.63
VPS13C-206ENST00000558338 TRAV23DV6A0A075B6W5 121 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 DEFB131BA0A096LNP1 70 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 TRBV7-6A0A0J9YX20 115 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 KRTAP9-7A8MTY7 169 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 RPL18AQ02543 176 aaKnown RBP4.86□□□□□ -1.63
VPS13C-206ENST00000558338 C11orf45Q8TAV5 145 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 DIRC1Q969H9 104 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 FAM236AA0A1B0GUQ0 79 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 FAM236BA0A1B0GV22 79 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 ATP5EP2Q5VTU8 51 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 KRTAP26-1Q6PEX3 210 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 Q8NDZ9 215 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 HECTD1Q9ULT8 2610 aa4.86□□□□□ -1.63
VPS13C-206ENST00000558338 OXTP01178 125 aa4.85□□□□□ -1.63
VPS13C-206ENST00000558338 ESRGQ1W209 222 aa4.85□□□□□ -1.63
VPS13C-206ENST00000558338 C9orf129Q5T035 196 aaKnown RBP4.85□□□□□ -1.63
VPS13C-206ENST00000558338 LINC00526Q96FQ7 95 aa4.85□□□□□ -1.63
VPS13C-206ENST00000558338 NDUFC2-KCTD14E9PQ53 114 aa4.84□□□□□ -1.63
VPS13C-206ENST00000558338 M0R378 163 aa4.84□□□□□ -1.63
VPS13C-206ENST00000558338 C15orf56Q8N910 161 aa4.84□□□□□ -1.63
VPS13C-206ENST00000558338 TRAV10A0A0B4J240 114 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 TRBV10-3A0A0K0K1G6 114 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 DNAH10OSP0CZ25 163 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 PDE6GP18545 87 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 COX7BP24311 80 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 HIGD2BQ4VC39 106 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-206ENST00000558338 LINC00846Q9NV44 126 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 TEP1Q99973 2627 aaKnown RBP4.83□□□□□ -1.64
VPS13C-206ENST00000558338 VWFP04275 2813 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 IGKV2D-24A0A075B6R9 120 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 LOC110117498A0A087WWA1 95 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 ATOX1O00244 68 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms