RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 CARD19Q96LW7 228 aa3.7□□□□□ -1.82
SCAF11-213ENST00000550629 CAMK2N2Q96S95 79 aa3.7□□□□□ -1.82
SCAF11-213ENST00000550629 HSBP1L1C9JCN9 74 aa3.69□□□□□ -1.82
SCAF11-213ENST00000550629 J3QQQ9 107 aa3.69□□□□□ -1.82
SCAF11-213ENST00000550629 HERV-K104P63124 156 aa3.69□□□□□ -1.82
SCAF11-213ENST00000550629 ZNF625Q96I27 306 aaPredicted RBP3.69□□□□□ -1.82
SCAF11-213ENST00000550629 TOMM7Q9P0U1 55 aa3.69□□□□□ -1.82
SCAF11-213ENST00000550629 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.68□□□□□ -1.82
SCAF11-213ENST00000550629 MYMXA0A1B0GTQ4 84 aa3.68□□□□□ -1.82
SCAF11-213ENST00000550629 LINC00587B1AMM8 73 aa3.68□□□□□ -1.82
SCAF11-213ENST00000550629 TLX1NBP0CAT3 122 aa3.68□□□□□ -1.82
SCAF11-213ENST00000550629 LGALS3P17931 250 aaKnown RBP3.68□□□□□ -1.82
SCAF11-213ENST00000550629 COX17Q14061 63 aa3.68□□□□□ -1.82
SCAF11-213ENST00000550629 UNQ6190/PRO20217Q6UXQ8 127 aa3.68□□□□□ -1.82
SCAF11-213ENST00000550629 Q6ZRU5 148 aa3.68□□□□□ -1.82
SCAF11-213ENST00000550629 LINC00474Q9P2X8 69 aa3.68□□□□□ -1.82
SCAF11-213ENST00000550629 LOC107984640A0A0U1RRK4 108 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 NDUFC2-KCTD14E9PQ53 114 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 UBE2V1Q13404 147 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 C2orf82Q6UX34 121 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 SDIM1Q6ZPB5 146 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 ATOH7Q8N100 152 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 LINC00526Q96FQ7 95 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 C6orf48Q9UBA6 75 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 NDUFA12Q9UI09 145 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 DNAH2Q9P225 4427 aa3.67□□□□□ -1.82
SCAF11-213ENST00000550629 A0A087X002 238 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 C16orf90A8MZG2 172 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 SMIM6P0DI80 62 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 TSPEAR-AS2P59090 65 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 PYY3Q5JQD4 70 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 VAMP8Q9BV40 100 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 ERG28Q9UKR5 140 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 HECTD4Q9Y4D8 3996 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 FRAS1Q86XX4 4008 aa3.66□□□□□ -1.82
SCAF11-213ENST00000550629 IGKV2D-26A0A0A0MRZ7 120 aa3.65□□□□□ -1.83
SCAF11-213ENST00000550629 TIMM17BO60830 172 aa3.65□□□□□ -1.83
SCAF11-213ENST00000550629 CIRBPQ14011 172 aaKnown RBP3.65□□□□□ -1.83
SCAF11-213ENST00000550629 Q6ZSA8 131 aa3.65□□□□□ -1.83
SCAF11-213ENST00000550629 A0A0J9YXY3 114 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 LOC105371267A0A1B0GV96 52 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 ZNF815PA8K554 130 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 DLEU1O43261 78 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 KRTAP10-1P60331 282 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 S100A12P80511 92 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 MAJINQ3KP22 176 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 C9orf116Q5BN46 136 aaPredicted RBP3.64□□□□□ -1.83
SCAF11-213ENST00000550629 Q6ZRP5 223 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 SPACA4Q8TDM5 124 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 DNAH17Q9UFH2 4485 aa3.64□□□□□ -1.83
SCAF11-213ENST00000550629 PKD1P98161 4303 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 FAT2Q9NYQ8 4349 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 A0A096LNI7 61 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 LOC107984156A0A0G2JMH3 177 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 EPM2AB3EWF7 344 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 CDK2AP2O75956 126 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 COX8AP10176 69 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 PFN2P35080 140 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 FUSP35637 526 aaKnown RBP eCLIP3.63□□□□□ -1.83
SCAF11-213ENST00000550629 LINC00158P58513 81 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 RPL18AQ02543 176 aaKnown RBP3.63□□□□□ -1.83
SCAF11-213ENST00000550629 LINC01620Q4KN68 170 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 SPATA45Q537H7 98 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 MEIG1Q5JSS6 88 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 SCGB1D4Q6XE38 83 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 Q6ZVH6 145 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 PCP2Q8IVA1 136 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 ARL17AQ8IVW1 177 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 BOD1L2Q8IYS8 172 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 COPS9Q8WXC6 57 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 PPDPFQ9H3Y8 114 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 DNAH10Q8IVF4 4471 aa3.63□□□□□ -1.83
SCAF11-213ENST00000550629 TMEM238C9JI98 176 aa3.62□□□□□ -1.83
SCAF11-213ENST00000550629 SMIM13P0DJ93 91 aa3.62□□□□□ -1.83
SCAF11-213ENST00000550629 GAGE2BQ13066 116 aa3.62□□□□□ -1.83
SCAF11-213ENST00000550629 SND1-IT1Q9HBX3 110 aa3.62□□□□□ -1.83
SCAF11-213ENST00000550629 PLAC8Q9NZF1 115 aa3.62□□□□□ -1.83
SCAF11-213ENST00000550629 IGKV2-24A0A0C4DH68 120 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 KRTAP16-1A8MUX0 517 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 IFITM1P13164 125 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 GAGE2EQ4V326 116 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 C9orf129Q5T035 196 aaKnown RBP3.61□□□□□ -1.83
SCAF11-213ENST00000550629 GAGE2AQ6NT46 116 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 SLC25A34Q6PIV7 304 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 MIR7-3HGQ8N6C7 128 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 DPH3Q96FX2 82 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 SPANXDQ9BXN6 97 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 TTTY13Q9BZ97 58 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 XAGE1AQ9HD64 81 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 SPANXCQ9NY87 97 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 GAGE2DQ9UEU5 116 aa3.61□□□□□ -1.83
SCAF11-213ENST00000550629 PKHD1P08F94 4074 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 PANO1I0J062 215 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 CHTF8P0CG12 524 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 LCE3CQ5T5A8 94 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 ADAMTSL4-AS1Q5T5F5 129 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 SCXQ7RTU7 201 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 CIRBP-AS1Q8TBR5 109 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 C14orf144Q96I85 54 aa3.6□□□□□ -1.83
SCAF11-213ENST00000550629 MIEN1Q9BRT3 115 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms