RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 NDUFA12Q9UI09 145 aa9.82□□□□□ -0.84
CHMP4A-207ENST00000533523 F8WDY8 70 aa9.81□□□□□ -0.84
CHMP4A-207ENST00000533523 COX8AP10176 69 aa9.81□□□□□ -0.84
CHMP4A-207ENST00000533523 C14orf144Q96I85 54 aa9.81□□□□□ -0.84
CHMP4A-207ENST00000533523 ZNF815PA8K554 130 aa9.8□□□□□ -0.84
CHMP4A-207ENST00000533523 NDUFA1O15239 70 aa9.8□□□□□ -0.84
CHMP4A-207ENST00000533523 CXCL5P42830 114 aa9.8□□□□□ -0.84
CHMP4A-207ENST00000533523 CKS1BP61024 79 aa9.8□□□□□ -0.84
CHMP4A-207ENST00000533523 REG3GQ6UW15 175 aa9.8□□□□□ -0.84
CHMP4A-207ENST00000533523 C2orf82Q6UX34 121 aa9.8□□□□□ -0.84
CHMP4A-207ENST00000533523 ZNF625Q96I27 306 aaPredicted RBP9.8□□□□□ -0.84
CHMP4A-207ENST00000533523 LOC107984640A0A0U1RRK4 108 aa9.79□□□□□ -0.84
CHMP4A-207ENST00000533523 MYMXA0A1B0GTQ4 84 aa9.79□□□□□ -0.84
CHMP4A-207ENST00000533523 PRO1933Q9H354 126 aa9.79□□□□□ -0.84
CHMP4A-207ENST00000533523 RNF151Q2KHN1 245 aa9.78□□□□□ -0.84
CHMP4A-207ENST00000533523 TP73-AS1Q9UF72 201 aa9.78□□□□□ -0.84
CHMP4A-207ENST00000533523 DLEU1O43261 78 aa9.77□□□□□ -0.85
CHMP4A-207ENST00000533523 C10orf25Q5T742 122 aa9.77□□□□□ -0.85
CHMP4A-207ENST00000533523 SLC25A34Q6PIV7 304 aa9.77□□□□□ -0.85
CHMP4A-207ENST00000533523 SPINK6Q6UWN8 80 aa9.77□□□□□ -0.85
CHMP4A-207ENST00000533523 UNQ6190/PRO20217Q6UXQ8 127 aa9.77□□□□□ -0.85
CHMP4A-207ENST00000533523 BOD1L2Q8IYS8 172 aa9.77□□□□□ -0.85
CHMP4A-207ENST00000533523 PTTG1IPP53801 180 aa9.76□□□□□ -0.85
CHMP4A-207ENST00000533523 HERV-K104P63124 156 aa9.76□□□□□ -0.85
CHMP4A-207ENST00000533523 SFTA2Q6UW10 78 aa9.76□□□□□ -0.85
CHMP4A-207ENST00000533523 GAGE2BQ13066 116 aa9.75□□□□□ -0.85
CHMP4A-207ENST00000533523 A0A0J9YXY3 114 aa9.74□□□□□ -0.85
CHMP4A-207ENST00000533523 KRTAP10-8P60410 259 aa9.74□□□□□ -0.85
CHMP4A-207ENST00000533523 Q6ZRP5 223 aa9.74□□□□□ -0.85
CHMP4A-207ENST00000533523 UQCR10Q9UDW1 63 aa9.74□□□□□ -0.85
CHMP4A-207ENST00000533523 RPL18AQ02543 176 aaKnown RBP9.73□□□□□ -0.85
CHMP4A-207ENST00000533523 SCGB1D4Q6XE38 83 aa9.73□□□□□ -0.85
CHMP4A-207ENST00000533523 C6orf48Q9UBA6 75 aa9.73□□□□□ -0.85
CHMP4A-207ENST00000533523 TRBV30A0A0K0K1B3 111 aa9.72□□□□□ -0.85
CHMP4A-207ENST00000533523 TSTD3H0UI37 97 aa9.72□□□□□ -0.85
CHMP4A-207ENST00000533523 C9orf116Q5BN46 136 aaPredicted RBP9.72□□□□□ -0.85
CHMP4A-207ENST00000533523 MEIG1Q5JSS6 88 aa9.72□□□□□ -0.85
CHMP4A-207ENST00000533523 MIEN1Q9BRT3 115 aa9.72□□□□□ -0.85
CHMP4A-207ENST00000533523 ERG28Q9UKR5 140 aa9.71□□□□□ -0.86
CHMP4A-207ENST00000533523 TLX1NBP0CAT3 122 aa9.7□□□□□ -0.86
CHMP4A-207ENST00000533523 SMIM13P0DJ93 91 aa9.7□□□□□ -0.86
CHMP4A-207ENST00000533523 C2orf91Q6ZV80 131 aa9.7□□□□□ -0.86
CHMP4A-207ENST00000533523 A0A0U1RRA0 63 aa9.69□□□□□ -0.86
CHMP4A-207ENST00000533523 TIMM17BO60830 172 aa9.69□□□□□ -0.86
CHMP4A-207ENST00000533523 PFN2P35080 140 aa9.69□□□□□ -0.86
CHMP4A-207ENST00000533523 LINC00158P58513 81 aa9.69□□□□□ -0.86
CHMP4A-207ENST00000533523 SRSF9Q13242 221 aaKnown RBP eCLIP9.69□□□□□ -0.86
CHMP4A-207ENST00000533523 LINC00587B1AMM8 73 aa9.68□□□□□ -0.86
CHMP4A-207ENST00000533523 LITAFQ99732 161 aa9.68□□□□□ -0.86
CHMP4A-207ENST00000533523 HIGD1BQ9P298 99 aa9.68□□□□□ -0.86
CHMP4A-207ENST00000533523 TMEM238C9JI98 176 aa9.67□□□□□ -0.86
CHMP4A-207ENST00000533523 COX17Q14061 63 aa9.67□□□□□ -0.86
CHMP4A-207ENST00000533523 ADAMTSL4-AS1Q5T5F5 129 aa9.67□□□□□ -0.86
CHMP4A-207ENST00000533523 KRTAP9-6A0A140TA67 174 aa9.66□□□□□ -0.86
CHMP4A-207ENST00000533523 MIR7-3HGQ8N6C7 128 aa9.65□□□□□ -0.86
CHMP4A-207ENST00000533523 DAND5Q8N907 189 aa9.65□□□□□ -0.86
CHMP4A-207ENST00000533523 SPANXB1Q9NS25 103 aaPredicted RBP9.65□□□□□ -0.86
CHMP4A-207ENST00000533523 A0A1W2PNN7 141 aa9.64□□□□□ -0.87
CHMP4A-207ENST00000533523 NDUFC2-KCTD14E9PQ53 114 aa9.64□□□□□ -0.87
CHMP4A-207ENST00000533523 SPANXDQ9BXN6 97 aa9.64□□□□□ -0.87
CHMP4A-207ENST00000533523 SPANXCQ9NY87 97 aa9.64□□□□□ -0.87
CHMP4A-207ENST00000533523 GAGE2EQ4V326 116 aa9.63□□□□□ -0.87
CHMP4A-207ENST00000533523 GAGE2DQ9UEU5 116 aa9.63□□□□□ -0.87
CHMP4A-207ENST00000533523 PSORS1C2Q9UIG4 136 aa9.63□□□□□ -0.87
CHMP4A-207ENST00000533523 DDTP30046 118 aa9.62□□□□□ -0.87
CHMP4A-207ENST00000533523 HIST1H4GQ99525 98 aa9.62□□□□□ -0.87
CHMP4A-207ENST00000533523 NPC2P61916 151 aa9.61□□□□□ -0.87
CHMP4A-207ENST00000533523 C1orf137Q5JT78 98 aa9.61□□□□□ -0.87
CHMP4A-207ENST00000533523 Q6ZVH6 145 aa9.61□□□□□ -0.87
CHMP4A-207ENST00000533523 SND1-IT1Q9HBX3 110 aa9.61□□□□□ -0.87
CHMP4A-207ENST00000533523 CTAG1AP78358 180 aa9.6□□□□□ -0.87
CHMP4A-207ENST00000533523 HSD52Q0P140 79 aa9.6□□□□□ -0.87
CHMP4A-207ENST00000533523 SOSTDC1Q6X4U4 206 aa9.6□□□□□ -0.87
CHMP4A-207ENST00000533523 PHF5AQ7RTV0 110 aaKnown RBP9.6□□□□□ -0.87
CHMP4A-207ENST00000533523 LINC00308Q8TCZ7 52 aa9.6□□□□□ -0.87
CHMP4A-207ENST00000533523 PCP4L1A6NKN8 68 aa9.59□□□□□ -0.87
CHMP4A-207ENST00000533523 EIF4EBP3O60516 100 aaPredicted RBP9.59□□□□□ -0.87
CHMP4A-207ENST00000533523 IFITM1P13164 125 aa9.59□□□□□ -0.87
CHMP4A-207ENST00000533523 TAL2Q16559 108 aa9.59□□□□□ -0.87
CHMP4A-207ENST00000533523 MUSTN1Q8IVN3 82 aa9.59□□□□□ -0.87
CHMP4A-207ENST00000533523 XAGE1AQ9HD64 81 aa9.59□□□□□ -0.87
CHMP4A-207ENST00000533523 FAM19A5Q7Z5A7 132 aaPredicted RBP9.58□□□□□ -0.88
CHMP4A-207ENST00000533523 PRR26Q8N8Z3 221 aa9.57□□□□□ -0.88
CHMP4A-207ENST00000533523 COPS9Q8WXC6 57 aa9.57□□□□□ -0.88
CHMP4A-207ENST00000533523 FAM168BA1KXE4 195 aa9.56□□□□□ -0.88
CHMP4A-207ENST00000533523 C9orf129Q5T035 196 aaKnown RBP9.56□□□□□ -0.88
CHMP4A-207ENST00000533523 CEND1Q8N111 149 aa9.56□□□□□ -0.88
CHMP4A-207ENST00000533523 DIRC1Q969H9 104 aa9.56□□□□□ -0.88
CHMP4A-207ENST00000533523 LOC107984156A0A0G2JMH3 177 aa9.55□□□□□ -0.88
CHMP4A-207ENST00000533523 M0QXV9 152 aa9.55□□□□□ -0.88
CHMP4A-207ENST00000533523 ARL17AQ8IVW1 177 aa9.55□□□□□ -0.88
CHMP4A-207ENST00000533523 PPDPFQ9H3Y8 114 aa9.55□□□□□ -0.88
CHMP4A-207ENST00000533523 RPL24P83731 157 aaKnown RBP9.54□□□□□ -0.88
CHMP4A-207ENST00000533523 IGLV7-43P04211 117 aa9.53□□□□□ -0.88
CHMP4A-207ENST00000533523 HINT1P49773 126 aaPredicted RBP9.53□□□□□ -0.88
CHMP4A-207ENST00000533523 FXYD2P54710 66 aa9.53□□□□□ -0.88
CHMP4A-207ENST00000533523 UBE2BP63146 152 aa9.53□□□□□ -0.88
CHMP4A-207ENST00000533523 LCE2AQ5TA79 106 aaPredicted RBP9.53□□□□□ -0.88
CHMP4A-207ENST00000533523 A4D1N5 150 aa9.52□□□□□ -0.89
CHMP4A-207ENST00000533523 H0Y9J4 135 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms