RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 LINC00643Q86TS7 51 aa8.08□□□□□ -1.12
NUP54-202ENST00000502850 IMUPQ9GZP8 106 aa8.08□□□□□ -1.12
NUP54-202ENST00000502850 C22orf24Q9Y442 160 aa8.08□□□□□ -1.12
NUP54-202ENST00000502850 TRBV7-7A0A0K0K1E9 115 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 ZNF561-AS1K7EIQ3 104 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 TTC32Q5I0X7 151 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 OBSCN-AS1Q96MR7 158 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 H3BQ85 93 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 NANOS2P60321 138 aaKnown RBP8.07□□□□□ -1.12
NUP54-202ENST00000502850 C9orf116Q5BN46 136 aaPredicted RBP8.07□□□□□ -1.12
NUP54-202ENST00000502850 WFDC10BQ8IUB3 73 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 C11orf45Q8TAV5 145 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 ANAPC13Q9BS18 74 aa8.07□□□□□ -1.12
NUP54-202ENST00000502850 DEFB131BA0A096LNP1 70 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 JMJD7-PLA2G4BH0Y9G9 81 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 TMEM256-PLSCR3K7ERE1 68 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 LINC01556Q5JQF7 62 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 C6orf223Q8N319 242 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 Q8N814 137 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 C2orf48Q96LS8 159 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 CMYA5Q8N3K9 4069 aa8.06□□□□□ -1.12
NUP54-202ENST00000502850 NCR3O14931 201 aa8.05□□□□□ -1.12
NUP54-202ENST00000502850 C10orf25Q5T742 122 aa8.05□□□□□ -1.12
NUP54-202ENST00000502850 GAGE2AQ6NT46 116 aa8.05□□□□□ -1.12
NUP54-202ENST00000502850 PRB2P02812 416 aaPredicted RBP8.04□□□□□ -1.12
NUP54-202ENST00000502850 SDIM1Q6ZPB5 146 aa8.04□□□□□ -1.12
NUP54-202ENST00000502850 CAMK2N2Q96S95 79 aa8.04□□□□□ -1.12
NUP54-202ENST00000502850 C1orf43Q9BWL3 253 aa8.04□□□□□ -1.12
NUP54-202ENST00000502850 IGLV6-57P01721 117 aa8.03□□□□□ -1.12
NUP54-202ENST00000502850 NDUFV3P56181 108 aaKnown RBP8.03□□□□□ -1.12
NUP54-202ENST00000502850 PRR3P79522 188 aaKnown RBP8.03□□□□□ -1.12
NUP54-202ENST00000502850 C6orf99Q4VX62 202 aa8.03□□□□□ -1.12
NUP54-202ENST00000502850 C6orf48Q9UBA6 75 aa8.03□□□□□ -1.12
NUP54-202ENST00000502850 GHRHP01286 108 aa8.03□□□□□ -1.12
NUP54-202ENST00000502850 ESRGQ1W209 222 aa8.03□□□□□ -1.12
NUP54-202ENST00000502850 TRAV10A0A0B4J240 114 aa8.02□□□□□ -1.13
NUP54-202ENST00000502850 KRTAP26-1Q6PEX3 210 aa8.01□□□□□ -1.13
NUP54-202ENST00000502850 LINC00575Q6W349 94 aa8.01□□□□□ -1.13
NUP54-202ENST00000502850 DNAH10OSP0CZ25 163 aa8□□□□□ -1.13
NUP54-202ENST00000502850 RPL18AQ02543 176 aaKnown RBP8□□□□□ -1.13
NUP54-202ENST00000502850 MRAPQ8TCY5 172 aa8□□□□□ -1.13
NUP54-202ENST00000502850 LINC00526Q96FQ7 95 aa8□□□□□ -1.13
NUP54-202ENST00000502850 C14orf132Q9NPU4 83 aa8□□□□□ -1.13
NUP54-202ENST00000502850 TRAV23DV6A0A075B6W5 121 aa8□□□□□ -1.13
NUP54-202ENST00000502850 TRBV7-6A0A0J9YX20 115 aa8□□□□□ -1.13
NUP54-202ENST00000502850 hADV29S1A0JD25 119 aa8□□□□□ -1.13
NUP54-202ENST00000502850 SLPIP03973 132 aa8□□□□□ -1.13
NUP54-202ENST00000502850 DIRC1Q969H9 104 aa8□□□□□ -1.13
NUP54-202ENST00000502850 NDUFC2-KCTD14E9PQ53 114 aa7.99□□□□□ -1.13
NUP54-202ENST00000502850 C15orf56Q8N910 161 aa7.99□□□□□ -1.13
NUP54-202ENST00000502850 Q8NDZ9 215 aa7.99□□□□□ -1.13
NUP54-202ENST00000502850 HIGD2BQ4VC39 106 aa7.98□□□□□ -1.13
NUP54-202ENST00000502850 SMCR5Q8TEV8 140 aa7.98□□□□□ -1.13
NUP54-202ENST00000502850 IGKV2D-24A0A075B6R9 120 aa7.97□□□□□ -1.13
NUP54-202ENST00000502850 CCKP06307 115 aa7.97□□□□□ -1.13
NUP54-202ENST00000502850 PRKDCP78527 4128 aaKnown RBP7.97□□□□□ -1.13
NUP54-202ENST00000502850 M0R378 163 aa7.96□□□□□ -1.13
NUP54-202ENST00000502850 Q6ZRU5 148 aa7.96□□□□□ -1.13
NUP54-202ENST00000502850 RMI2Q96E14 147 aa7.96□□□□□ -1.13
NUP54-202ENST00000502850 TM2D3Q9BRN9 247 aa7.96□□□□□ -1.13
NUP54-202ENST00000502850 TRBV10-3A0A0K0K1G6 114 aa7.96□□□□□ -1.14
NUP54-202ENST00000502850 Q6JHZ5 121 aa7.96□□□□□ -1.14
NUP54-202ENST00000502850 XAGE1AQ9HD64 81 aa7.96□□□□□ -1.14
NUP54-202ENST00000502850 ZNF73O43830 326 aaPredicted RBP7.95□□□□□ -1.14
NUP54-202ENST00000502850 VPREB1P12018 145 aa7.95□□□□□ -1.14
NUP54-202ENST00000502850 COX7BP24311 80 aa7.95□□□□□ -1.14
NUP54-202ENST00000502850 SYCNQ0VAF6 134 aa7.95□□□□□ -1.14
NUP54-202ENST00000502850 C9orf129Q5T035 196 aaKnown RBP7.95□□□□□ -1.14
NUP54-202ENST00000502850 K7EIL1 84 aa7.94□□□□□ -1.14
NUP54-202ENST00000502850 PDE6GP18545 87 aa7.94□□□□□ -1.14
NUP54-202ENST00000502850 ATP5EP2Q5VTU8 51 aa7.94□□□□□ -1.14
NUP54-202ENST00000502850 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.94□□□□□ -1.14
NUP54-202ENST00000502850 NHLRC4P0CG21 123 aaPredicted RBP7.93□□□□□ -1.14
NUP54-202ENST00000502850 FAM236AA0A1B0GUQ0 79 aa7.92□□□□□ -1.14
NUP54-202ENST00000502850 FAM236BA0A1B0GV22 79 aa7.92□□□□□ -1.14
NUP54-202ENST00000502850 ELOF1P60002 83 aaKnown RBP7.92□□□□□ -1.14
NUP54-202ENST00000502850 RBM3P98179 157 aaKnown RBP7.92□□□□□ -1.14
NUP54-202ENST00000502850 LOC110117498A0A087WWA1 95 aa7.92□□□□□ -1.14
NUP54-202ENST00000502850 TLX1NBP0CAT3 122 aa7.91□□□□□ -1.14
NUP54-202ENST00000502850 LINC00846Q9NV44 126 aa7.91□□□□□ -1.14
NUP54-202ENST00000502850 LAMTOR3Q9UHA4 124 aa7.91□□□□□ -1.14
NUP54-202ENST00000502850 DNAH3Q8TD57 4116 aa7.91□□□□□ -1.14
NUP54-202ENST00000502850 Q6ZQY7 126 aa7.9□□□□□ -1.14
NUP54-202ENST00000502850 UPK3BQ9BT76 320 aa7.9□□□□□ -1.14
NUP54-202ENST00000502850 NKAPP1Q8N9T2 125 aa7.89□□□□□ -1.15
NUP54-202ENST00000502850 DSCR8Q96T75 97 aa7.89□□□□□ -1.15
NUP54-202ENST00000502850 PLA2G2DQ9UNK4 145 aa7.89□□□□□ -1.15
NUP54-202ENST00000502850 LINC00588Q9Y4M8 146 aa7.89□□□□□ -1.15
NUP54-202ENST00000502850 Q6ZRP5 223 aa7.89□□□□□ -1.15
NUP54-202ENST00000502850 UBL5Q9BZL1 73 aa7.89□□□□□ -1.15
NUP54-202ENST00000502850 ATOX1O00244 68 aa7.88□□□□□ -1.15
NUP54-202ENST00000502850 Q6ZQT0 140 aa7.87□□□□□ -1.15
NUP54-202ENST00000502850 B9D2Q9BPU9 175 aa7.87□□□□□ -1.15
NUP54-202ENST00000502850 HIST1H4AP62805 103 aaKnown RBP7.85□□□□□ -1.15
NUP54-202ENST00000502850 LINC00528Q8N1L1 170 aa7.85□□□□□ -1.15
NUP54-202ENST00000502850 TENM3Q9P273 2699 aa7.85□□□□□ -1.15
NUP54-202ENST00000502850 IGLV5-37A0A075B6J1 123 aa7.85□□□□□ -1.15
NUP54-202ENST00000502850 USP17L23D6RBM5 183 aa7.85□□□□□ -1.15
NUP54-202ENST00000502850 KCNQ1DNQ9H478 68 aa7.85□□□□□ -1.15
NUP54-202ENST00000502850 COL7A1Q02388 2944 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms