RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 IL15RAQ13261 267 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 SPRR4Q96PI1 79 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 A0A087WXM4 84 aa2.11□□□□□ -2.07
VPS50-214ENST00000477935 C7orf77A4D0Y5 90 aa2.11□□□□□ -2.07
VPS50-214ENST00000477935 FOXA3P55318 350 aaPredicted RBP2.11□□□□□ -2.07
VPS50-214ENST00000477935 RPL37P61927 97 aaKnown RBP2.11□□□□□ -2.07
VPS50-214ENST00000477935 RNASE13Q5GAN3 156 aaKnown RBP2.11□□□□□ -2.07
VPS50-214ENST00000477935 FAM19A1Q7Z5A9 133 aa2.11□□□□□ -2.07
VPS50-214ENST00000477935 GATD1Q8NB37 220 aa2.11□□□□□ -2.07
VPS50-214ENST00000477935 XAGE1AQ9HD64 81 aa2.11□□□□□ -2.07
VPS50-214ENST00000477935 C8orf17Q9NRJ1 99 aa2.11□□□□□ -2.07
VPS50-214ENST00000477935 SMIM26A0A096LP01 95 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 TRBV6-5A0A0K0K1A5 114 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 C9orf92A6NGG3 77 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 TEX46H3BTG2 121 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 IGLV6-57P01721 117 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 IGLC6P0CF74 106 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 DEFA3P59666 94 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 PRLHP81277 87 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 FAM231DQ6ZW35 169 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 ACTR3CQ9C0K3 210 aaPredicted RBP2.1□□□□□ -2.07
VPS50-214ENST00000477935 TMEM242Q9NWH2 141 aa2.1□□□□□ -2.07
VPS50-214ENST00000477935 TGIF2-C20orf24A0A0A6YYL0 155 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 CENPXA8MT69 81 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 CKS1BP61024 79 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 RPL23P62829 140 aaKnown RBP2.09□□□□□ -2.07
VPS50-214ENST00000477935 SERF2P84101 59 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 PYDC2Q56P42 97 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 C2orf82Q6UX34 121 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 SMIM15Q7Z3B0 74 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 LINC00469Q8N7U9 141 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 TIMM21Q9BVV7 248 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 HIGD2AQ9BW72 106 aa2.09□□□□□ -2.07
VPS50-214ENST00000477935 TRBV27A0A0K0K1C4 114 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 C6orf99Q4VX62 202 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 BAGE2Q86Y30 109 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 C9orf62Q8N4C0 152 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 STOML3Q8TAV4 291 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 RPL39LQ96EH5 51 aaKnown RBP2.08□□□□□ -2.08
VPS50-214ENST00000477935 TMEM126AQ9H061 195 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 ST20Q9HBF5 79 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 TNFSF18Q9UNG2 199 aa2.08□□□□□ -2.08
VPS50-214ENST00000477935 TRBV20-1A0A075B6N2 111 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 ATP6V0CP27449 155 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 FCER1GP30273 86 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 AKR1C3P42330 323 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 POLR2KP53803 58 aaKnown RBP2.07□□□□□ -2.08
VPS50-214ENST00000477935 MIR7-3HGQ8N6C7 128 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 LIMD2Q9BT23 127 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 PSMG3Q9BT73 122 aaPredicted RBP2.07□□□□□ -2.08
VPS50-214ENST00000477935 CNFNQ9BYD5 112 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 HSPB11Q9Y547 144 aa2.07□□□□□ -2.08
VPS50-214ENST00000477935 F8VRH5 84 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 INMT-MINDY4F8WBC2 141 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 M0R378 163 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 SIX6O95475 246 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 HBBP68871 147 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 ATP11AUNQ6ZP68 121 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 FAM19A3Q7Z5A8 133 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 SMIM3Q9BZL3 60 aa2.06□□□□□ -2.08
VPS50-214ENST00000477935 RNASE7Q9H1E1 156 aaKnown RBP2.06□□□□□ -2.08
VPS50-214ENST00000477935 CTXND1A0A1B0GTU2 59 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 TMEM238C9JI98 176 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 TCAPO15273 167 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 PPP1R17O96001 155 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 PET100P0DJ07 73 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 MRPS36P82909 103 aaKnown RBP2.05□□□□□ -2.08
VPS50-214ENST00000477935 C10orf91Q5T1B1 145 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 Q6ZUT4 128 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 Q8IZM0 81 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 SEC22CQ9BRL7 303 aa2.05□□□□□ -2.08
VPS50-214ENST00000477935 CCDC160A6NGH7 325 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 S100A5P33763 92 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 TRIQKQ629K1 86 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 ST20-AS1Q8NBB2 130 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 C20orf166-AS1Q96NR2 134 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 BIN3Q9NQY0 253 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 SPANXA1Q9NS26 97 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 TOMM7Q9P0U1 55 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 CBY1Q9Y3M2 126 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 V9GYH0 126 aa2.04□□□□□ -2.08
VPS50-214ENST00000477935 A6NN06 94 aa2.03□□□□□ -2.08
VPS50-214ENST00000477935 RAB4AP20338 218 aa2.03□□□□□ -2.08
VPS50-214ENST00000477935 KRTAP12-3P60328 96 aa2.03□□□□□ -2.08
VPS50-214ENST00000477935 AKAP14Q86UN6 197 aa2.03□□□□□ -2.08
VPS50-214ENST00000477935 SMCR5Q8TEV8 140 aa2.03□□□□□ -2.08
VPS50-214ENST00000477935 PPP1R1CQ8WVI7 109 aa2.03□□□□□ -2.08
VPS50-214ENST00000477935 SMIM12Q96EX1 92 aa2.03□□□□□ -2.08
VPS50-214ENST00000477935 FXYD6-FXYD2A0A087WZ82 144 aa2.02□□□□□ -2.09
VPS50-214ENST00000477935 PFDN1O60925 122 aa2.02□□□□□ -2.09
VPS50-214ENST00000477935 MPC2O95563 127 aa2.02□□□□□ -2.09
VPS50-214ENST00000477935 RPL35P42766 123 aaKnown RBP2.02□□□□□ -2.09
VPS50-214ENST00000477935 KRTAP12-4P60329 112 aa2.02□□□□□ -2.09
VPS50-214ENST00000477935 SPANXA2-OT1Q8N9U9 137 aa2.02□□□□□ -2.09
VPS50-214ENST00000477935 SPRR2EP22531 72 aa2.01□□□□□ -2.09
VPS50-214ENST00000477935 SPRR2BP35325 72 aa2.01□□□□□ -2.09
VPS50-214ENST00000477935 SPRR2AP35326 72 aa2.01□□□□□ -2.09
VPS50-214ENST00000477935 DEFA1P59665 94 aa2.01□□□□□ -2.09
VPS50-214ENST00000477935 TRBV20OR9-2A0A075B6H5 130 aa2□□□□□ -2.09
VPS50-214ENST00000477935 FAM236DA0A1B0GTK5 79 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms