RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 IGKV2D-24A0A075B6R9 120 aa8.1□□□□□ -1.11
SYNE1-222ENST00000474655 Q8NDZ9 215 aa8.1□□□□□ -1.11
SYNE1-222ENST00000474655 FAM218AQ96MZ4 157 aa8.1□□□□□ -1.11
SYNE1-222ENST00000474655 OR13C6PQ8NH95 151 aa8.1□□□□□ -1.11
SYNE1-222ENST00000474655 CAMK2N2Q96S95 79 aa8.1□□□□□ -1.11
SYNE1-222ENST00000474655 TMEM126AQ9H061 195 aa8.1□□□□□ -1.11
SYNE1-222ENST00000474655 DNAH9Q9NYC9 4486 aa8.09□□□□□ -1.11
SYNE1-222ENST00000474655 PRR3P79522 188 aaKnown RBP8.09□□□□□ -1.11
SYNE1-222ENST00000474655 HIGD2BQ4VC39 106 aa8.09□□□□□ -1.11
SYNE1-222ENST00000474655 Q6ZRU5 148 aa8.07□□□□□ -1.12
SYNE1-222ENST00000474655 NHLRC4P0CG21 123 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-222ENST00000474655 Q9HAA7 133 aa8.06□□□□□ -1.12
SYNE1-222ENST00000474655 TEX49A0A1B0GTD5 131 aa8.05□□□□□ -1.12
SYNE1-222ENST00000474655 NDUFC2-KCTD14E9PQ53 114 aa8.05□□□□□ -1.12
SYNE1-222ENST00000474655 RMI2Q96E14 147 aa8.05□□□□□ -1.12
SYNE1-222ENST00000474655 APLNQ9ULZ1 77 aa8.05□□□□□ -1.12
SYNE1-222ENST00000474655 IGLV6-57P01721 117 aa8.05□□□□□ -1.12
SYNE1-222ENST00000474655 A0A087WYN8 130 aa8.04□□□□□ -1.12
SYNE1-222ENST00000474655 A0A1B0GX51 115 aa8.04□□□□□ -1.12
SYNE1-222ENST00000474655 NCR3O14931 201 aa8.04□□□□□ -1.12
SYNE1-222ENST00000474655 SYCNQ0VAF6 134 aa8.04□□□□□ -1.12
SYNE1-222ENST00000474655 C22orf24Q9Y442 160 aa8.04□□□□□ -1.12
SYNE1-222ENST00000474655 BAALC-AS2P0C853 105 aa8.03□□□□□ -1.12
SYNE1-222ENST00000474655 DNAH1Q9P2D7 4330 aa8.03□□□□□ -1.12
SYNE1-222ENST00000474655 S100A7L2Q5SY68 101 aa8.02□□□□□ -1.13
SYNE1-222ENST00000474655 XAGE1AQ9HD64 81 aa8.02□□□□□ -1.13
SYNE1-222ENST00000474655 DYNC2H1Q8NCM8 4307 aaKnown RBP8.02□□□□□ -1.13
SYNE1-222ENST00000474655 TLX1NBP0CAT3 122 aa8.02□□□□□ -1.13
SYNE1-222ENST00000474655 LINC00167Q96N53 147 aa8.02□□□□□ -1.13
SYNE1-222ENST00000474655 USP17L23D6RBM5 183 aa8.01□□□□□ -1.13
SYNE1-222ENST00000474655 VPREB1P12018 145 aa8.01□□□□□ -1.13
SYNE1-222ENST00000474655 Q6ZRP5 223 aa8.01□□□□□ -1.13
SYNE1-222ENST00000474655 CDIP1Q9H305 208 aa8.01□□□□□ -1.13
SYNE1-222ENST00000474655 LECT2O14960 151 aa8□□□□□ -1.13
SYNE1-222ENST00000474655 DNAL4O96015 105 aa8□□□□□ -1.13
SYNE1-222ENST00000474655 PCP4P48539 62 aa8□□□□□ -1.13
SYNE1-222ENST00000474655 RPL18AQ02543 176 aaKnown RBP8□□□□□ -1.13
SYNE1-222ENST00000474655 CASC10Q5T4H9 136 aa8□□□□□ -1.13
SYNE1-222ENST00000474655 CSMD3Q7Z407 3707 aa8□□□□□ -1.13
SYNE1-222ENST00000474655 SLPIP03973 132 aa7.99□□□□□ -1.13
SYNE1-222ENST00000474655 C6orf99Q4VX62 202 aa7.99□□□□□ -1.13
SYNE1-222ENST00000474655 KRTAP1-5Q9BYS1 174 aa7.99□□□□□ -1.13
SYNE1-222ENST00000474655 Q8N814 137 aa7.98□□□□□ -1.13
SYNE1-222ENST00000474655 TRBV10-3A0A0K0K1G6 114 aa7.97□□□□□ -1.13
SYNE1-222ENST00000474655 FAM240AA0A1B0GVK7 77 aa7.97□□□□□ -1.13
SYNE1-222ENST00000474655 NUPR2A6NF83 97 aa7.97□□□□□ -1.13
SYNE1-222ENST00000474655 M0R378 163 aa7.97□□□□□ -1.13
SYNE1-222ENST00000474655 SIGMAR1Q99720 223 aa7.97□□□□□ -1.13
SYNE1-222ENST00000474655 C9orf129Q5T035 196 aaKnown RBP7.97□□□□□ -1.13
SYNE1-222ENST00000474655 LINC00575Q6W349 94 aa7.97□□□□□ -1.13
SYNE1-222ENST00000474655 PLA2G2DQ9UNK4 145 aa7.97□□□□□ -1.13
SYNE1-222ENST00000474655 GAGE2EQ4V326 116 aa7.96□□□□□ -1.14
SYNE1-222ENST00000474655 OBSCN-AS1Q96MR7 158 aa7.96□□□□□ -1.14
SYNE1-222ENST00000474655 ORMDL1Q9P0S3 153 aa7.96□□□□□ -1.14
SYNE1-222ENST00000474655 GAGE2DQ9UEU5 116 aa7.96□□□□□ -1.14
SYNE1-222ENST00000474655 LYSTQ99698 3801 aa7.95□□□□□ -1.14
SYNE1-222ENST00000474655 TRAV23DV6A0A075B6W5 121 aa7.95□□□□□ -1.14
SYNE1-222ENST00000474655 TRBV7-6A0A0J9YX20 115 aa7.95□□□□□ -1.14
SYNE1-222ENST00000474655 UBE2DNLQ8IWF7 75 aa7.95□□□□□ -1.14
SYNE1-222ENST00000474655 SNCGO76070 127 aa7.94□□□□□ -1.14
SYNE1-222ENST00000474655 INAFM2P0DMQ5 153 aa7.94□□□□□ -1.14
SYNE1-222ENST00000474655 KRTAP21-3Q3LHN1 58 aa7.94□□□□□ -1.14
SYNE1-222ENST00000474655 ZNF73O43830 326 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-222ENST00000474655 DIRC1Q969H9 104 aa7.93□□□□□ -1.14
SYNE1-222ENST00000474655 MEGF8Q7Z7M0 2845 aa7.93□□□□□ -1.14
SYNE1-222ENST00000474655 TENM2Q9NT68 2774 aa7.93□□□□□ -1.14
SYNE1-222ENST00000474655 PRKDCP78527 4128 aaKnown RBP7.92□□□□□ -1.14
SYNE1-222ENST00000474655 IGLV5-37A0A075B6J1 123 aa7.92□□□□□ -1.14
SYNE1-222ENST00000474655 hADV29S1A0JD25 119 aa7.92□□□□□ -1.14
SYNE1-222ENST00000474655 TMEM256-PLSCR3K7ERE1 68 aa7.92□□□□□ -1.14
SYNE1-222ENST00000474655 DNAH7Q8WXX0 4024 aa7.91□□□□□ -1.14
SYNE1-222ENST00000474655 ACYP1P07311 99 aa7.91□□□□□ -1.14
SYNE1-222ENST00000474655 XGP55808 180 aa7.91□□□□□ -1.14
SYNE1-222ENST00000474655 ELOF1P60002 83 aaKnown RBP7.91□□□□□ -1.14
SYNE1-222ENST00000474655 CNBPP62633 177 aaKnown RBP7.9□□□□□ -1.14
SYNE1-222ENST00000474655 C21orf62-AS1Q17RA5 79 aa7.9□□□□□ -1.14
SYNE1-222ENST00000474655 SERTAD4-AS1Q5TG53 156 aa7.9□□□□□ -1.14
SYNE1-222ENST00000474655 LOC107984640A0A0U1RRK4 108 aa7.89□□□□□ -1.15
SYNE1-222ENST00000474655 SCGB1A1P11684 91 aa7.89□□□□□ -1.15
SYNE1-222ENST00000474655 TTC32Q5I0X7 151 aa7.89□□□□□ -1.15
SYNE1-222ENST00000474655 KCNQ1DNQ9H478 68 aa7.89□□□□□ -1.15
SYNE1-222ENST00000474655 COX7BP24311 80 aa7.89□□□□□ -1.15
SYNE1-222ENST00000474655 NBDYA0A0U1RRE5 68 aa7.88□□□□□ -1.15
SYNE1-222ENST00000474655 H3BQ85 93 aa7.88□□□□□ -1.15
SYNE1-222ENST00000474655 MT-ATP8P03928 68 aa7.88□□□□□ -1.15
SYNE1-222ENST00000474655 SDIM1Q6ZPB5 146 aa7.88□□□□□ -1.15
SYNE1-222ENST00000474655 NKAPP1Q8N9T2 125 aa7.88□□□□□ -1.15
SYNE1-222ENST00000474655 C7orf33Q8WU49 177 aa7.88□□□□□ -1.15
SYNE1-222ENST00000474655 PLECQ15149 4684 aaKnown RBP7.87□□□□□ -1.15
SYNE1-222ENST00000474655 JMJD7-PLA2G4BH0Y9G9 81 aa7.87□□□□□ -1.15
SYNE1-222ENST00000474655 PSCAO43653 123 aa7.87□□□□□ -1.15
SYNE1-222ENST00000474655 C14orf177Q52M58 125 aa7.87□□□□□ -1.15
SYNE1-222ENST00000474655 LINC00528Q8N1L1 170 aa7.87□□□□□ -1.15
SYNE1-222ENST00000474655 KRTAP7-1Q8IUC3 87 aa7.87□□□□□ -1.15
SYNE1-222ENST00000474655 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-222ENST00000474655 DNHD1Q96M86 4753 aa7.85□□□□□ -1.15
SYNE1-222ENST00000474655 GAGE2BQ13066 116 aa7.85□□□□□ -1.15
SYNE1-222ENST00000474655 Q6ZQY7 126 aa7.85□□□□□ -1.15
SYNE1-222ENST00000474655 Q6ZRN7 208 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-222ENST00000474655 C14orf132Q9NPU4 83 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms