RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 HERVK_113P61574 105 aa7.78□□□□□ -1.16
SKA1-203ENST00000417656 SERTAD4-AS1Q5TG53 156 aa7.78□□□□□ -1.16
SKA1-203ENST00000417656 LINC01545Q5VT33 79 aa7.78□□□□□ -1.16
SKA1-203ENST00000417656 SFTA2Q6UW10 78 aa7.78□□□□□ -1.16
SKA1-203ENST00000417656 PET117Q6UWS5 81 aa7.78□□□□□ -1.16
SKA1-203ENST00000417656 LEPROTO15243 131 aa7.77□□□□□ -1.17
SKA1-203ENST00000417656 HNRNPA3P51991 378 aaKnown RBP7.77□□□□□ -1.17
SKA1-203ENST00000417656 PRR3P79522 188 aaKnown RBP7.77□□□□□ -1.17
SKA1-203ENST00000417656 HIST3H2BBQ8N257 126 aa7.76□□□□□ -1.17
SKA1-203ENST00000417656 PLEKHB2Q96CS7 222 aa7.76□□□□□ -1.17
SKA1-203ENST00000417656 NDUFA12Q9UI09 145 aa7.76□□□□□ -1.17
SKA1-203ENST00000417656 PKHD1L1Q86WI1 4243 aa7.75□□□□□ -1.17
SKA1-203ENST00000417656 A0A0U1RRA0 63 aa7.74□□□□□ -1.17
SKA1-203ENST00000417656 J3QQQ9 107 aa7.74□□□□□ -1.17
SKA1-203ENST00000417656 COX17Q14061 63 aa7.74□□□□□ -1.17
SKA1-203ENST00000417656 KRTAP11-1Q8IUC1 163 aa7.74□□□□□ -1.17
SKA1-203ENST00000417656 SND1-IT1Q9HBX3 110 aa7.74□□□□□ -1.17
SKA1-203ENST00000417656 FLG2Q5D862 2391 aaPredicted RBP7.73□□□□□ -1.17
SKA1-203ENST00000417656 MYMXA0A1B0GTQ4 84 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 C20orf202A1L168 122 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 LGALS3P17931 250 aaKnown RBP7.73□□□□□ -1.17
SKA1-203ENST00000417656 S100A2P29034 98 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 LINC00158P58513 81 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 HERV-K104P63124 156 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 MEIG1Q5JSS6 88 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 HIST1H2BLQ99880 126 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 PSORS1C2Q9UIG4 136 aa7.73□□□□□ -1.17
SKA1-203ENST00000417656 E9PLD3 99 aa7.72□□□□□ -1.17
SKA1-203ENST00000417656 SMIM13P0DJ93 91 aa7.72□□□□□ -1.17
SKA1-203ENST00000417656 UBE2BP63146 152 aa7.72□□□□□ -1.17
SKA1-203ENST00000417656 C22orf24Q9Y442 160 aa7.72□□□□□ -1.17
SKA1-203ENST00000417656 MYCBP2O75592 4640 aa7.71□□□□□ -1.17
SKA1-203ENST00000417656 LOC105371267A0A1B0GV96 52 aa7.71□□□□□ -1.18
SKA1-203ENST00000417656 PLA2G2DQ9UNK4 145 aa7.71□□□□□ -1.18
SKA1-203ENST00000417656 NMUP48645 174 aa7.7□□□□□ -1.18
SKA1-203ENST00000417656 SNRPEP62304 92 aaKnown RBP7.7□□□□□ -1.18
SKA1-203ENST00000417656 MRPL55Q7Z7F7 128 aaKnown RBP7.7□□□□□ -1.18
SKA1-203ENST00000417656 ATOH7Q8N100 152 aa7.7□□□□□ -1.18
SKA1-203ENST00000417656 TP73-AS1Q9UF72 201 aa7.7□□□□□ -1.18
SKA1-203ENST00000417656 IGLV5-37A0A075B6J1 123 aa7.69□□□□□ -1.18
SKA1-203ENST00000417656 VPREB1P12018 145 aa7.69□□□□□ -1.18
SKA1-203ENST00000417656 C1orf137Q5JT78 98 aa7.69□□□□□ -1.18
SKA1-203ENST00000417656 MIR7-3HGQ8N6C7 128 aa7.69□□□□□ -1.18
SKA1-203ENST00000417656 NKAPP1Q8N9T2 125 aa7.69□□□□□ -1.18
SKA1-203ENST00000417656 Q8NDZ9 215 aa7.69□□□□□ -1.18
SKA1-203ENST00000417656 IGKV2D-26A0A0A0MRZ7 120 aa7.68□□□□□ -1.18
SKA1-203ENST00000417656 GAGE10A6NGK3 116 aa7.68□□□□□ -1.18
SKA1-203ENST00000417656 EIF4EBP3O60516 100 aaPredicted RBP7.68□□□□□ -1.18
SKA1-203ENST00000417656 LBHQ53QV2 105 aaPredicted RBP7.68□□□□□ -1.18
SKA1-203ENST00000417656 ANKRD39Q53RE8 183 aa7.68□□□□□ -1.18
SKA1-203ENST00000417656 C5orf52A6NGY3 159 aa7.67□□□□□ -1.18
SKA1-203ENST00000417656 LINC00587B1AMM8 73 aa7.67□□□□□ -1.18
SKA1-203ENST00000417656 S100A12P80511 92 aa7.67□□□□□ -1.18
SKA1-203ENST00000417656 DAND5Q8N907 189 aa7.67□□□□□ -1.18
SKA1-203ENST00000417656 LINC00167Q96N53 147 aa7.67□□□□□ -1.18
SKA1-203ENST00000417656 A0A0J9YXY3 114 aa7.66□□□□□ -1.18
SKA1-203ENST00000417656 RPL37AP8A6NKH3 93 aa7.66□□□□□ -1.18
SKA1-203ENST00000417656 TTTY13Q9BZ97 58 aa7.66□□□□□ -1.18
SKA1-203ENST00000417656 ZNF815PA8K554 130 aa7.65□□□□□ -1.18
SKA1-203ENST00000417656 RPL24P83731 157 aaKnown RBP7.65□□□□□ -1.18
SKA1-203ENST00000417656 FAT3Q8TDW7 4589 aa7.65□□□□□ -1.19
SKA1-203ENST00000417656 IGLV7-43P04211 117 aa7.64□□□□□ -1.19
SKA1-203ENST00000417656 AKR1D1P51857 326 aa7.64□□□□□ -1.19
SKA1-203ENST00000417656 BOD1L2Q8IYS8 172 aa7.64□□□□□ -1.19
SKA1-203ENST00000417656 LRP1Q07954 4544 aaKnown RBP7.64□□□□□ -1.19
SKA1-203ENST00000417656 IGKV2-28A0A075B6P5 120 aa7.63□□□□□ -1.19
SKA1-203ENST00000417656 NCR3O14931 201 aa7.63□□□□□ -1.19
SKA1-203ENST00000417656 IGKV2D-28P01615 120 aa7.63□□□□□ -1.19
SKA1-203ENST00000417656 SRSF9Q13242 221 aaKnown RBP eCLIP7.63□□□□□ -1.19
SKA1-203ENST00000417656 SPINK6Q6UWN8 80 aa7.63□□□□□ -1.19
SKA1-203ENST00000417656 KRTAP29-1A8MX34 341 aaPredicted RBP7.62□□□□□ -1.19
SKA1-203ENST00000417656 NPC2P61916 151 aa7.61□□□□□ -1.19
SKA1-203ENST00000417656 ADAMTSL4-AS1Q5T5F5 129 aa7.61□□□□□ -1.19
SKA1-203ENST00000417656 LCE1DQ5T752 114 aa7.61□□□□□ -1.19
SKA1-203ENST00000417656 LITAFQ99732 161 aa7.61□□□□□ -1.19
SKA1-203ENST00000417656 MIEN1Q9BRT3 115 aa7.61□□□□□ -1.19
SKA1-203ENST00000417656 KRTAP4-7Q9BYR0 210 aa7.61□□□□□ -1.19
SKA1-203ENST00000417656 IGLV1-50A0A075B6I6 118 aa7.6□□□□□ -1.19
SKA1-203ENST00000417656 OXTP01178 125 aa7.6□□□□□ -1.19
SKA1-203ENST00000417656 SOSTDC1Q6X4U4 206 aa7.6□□□□□ -1.19
SKA1-203ENST00000417656 PCP2Q8IVA1 136 aa7.6□□□□□ -1.19
SKA1-203ENST00000417656 LOC107984156A0A0G2JMH3 177 aa7.59□□□□□ -1.19
SKA1-203ENST00000417656 TMEM238C9JI98 176 aa7.59□□□□□ -1.19
SKA1-203ENST00000417656 M0R378 163 aa7.59□□□□□ -1.19
SKA1-203ENST00000417656 BCE1O60756 84 aa7.59□□□□□ -1.19
SKA1-203ENST00000417656 TIMM17BO60830 172 aa7.59□□□□□ -1.19
SKA1-203ENST00000417656 SCGB1D1O95968 90 aa7.59□□□□□ -1.19
SKA1-203ENST00000417656 ARL17AQ8IVW1 177 aa7.59□□□□□ -1.19
SKA1-203ENST00000417656 DMBT1Q9UGM3 2413 aaPredicted RBP7.59□□□□□ -1.19
SKA1-203ENST00000417656 HSBP1L1C9JCN9 74 aa7.58□□□□□ -1.2
SKA1-203ENST00000417656 SCGB1D4Q6XE38 83 aa7.58□□□□□ -1.2
SKA1-203ENST00000417656 DIRC1Q969H9 104 aa7.58□□□□□ -1.2
SKA1-203ENST00000417656 H0Y9J4 135 aa7.57□□□□□ -1.2
SKA1-203ENST00000417656 REG3GQ6UW15 175 aa7.57□□□□□ -1.2
SKA1-203ENST00000417656 TMEM126AQ9H061 195 aa7.57□□□□□ -1.2
SKA1-203ENST00000417656 ZNF861PO60384 105 aa7.56□□□□□ -1.2
SKA1-203ENST00000417656 LINC00308Q8TCZ7 52 aa7.56□□□□□ -1.2
SKA1-203ENST00000417656 SPANXB1Q9NS25 103 aaPredicted RBP7.56□□□□□ -1.2
SKA1-203ENST00000417656 TRBV10-3A0A0K0K1G6 114 aa7.55□□□□□ -1.2
SKA1-203ENST00000417656 NDUFC2O95298 119 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms