RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 HIGD2BQ4VC39 106 aa13.4□□□□□ -0.26
USP39-204ENST00000409766 C15orf56Q8N910 161 aa13.4□□□□□ -0.26
USP39-204ENST00000409766 C1orf43Q9BWL3 253 aa13.4□□□□□ -0.26
USP39-204ENST00000409766 C22orf24Q9Y442 160 aa13.4□□□□□ -0.26
USP39-204ENST00000409766 NCR3O14931 201 aa13.39□□□□□ -0.27
USP39-204ENST00000409766 DNAL4O96015 105 aa13.37□□□□□ -0.27
USP39-204ENST00000409766 CAMK2N2Q96S95 79 aa13.37□□□□□ -0.27
USP39-204ENST00000409766 LINC00588Q9Y4M8 146 aa13.37□□□□□ -0.27
USP39-204ENST00000409766 IGKV2D-24A0A075B6R9 120 aa13.37□□□□□ -0.27
USP39-204ENST00000409766 XGP55808 180 aa13.37□□□□□ -0.27
USP39-204ENST00000409766 LECT2O14960 151 aa13.35□□□□□ -0.27
USP39-204ENST00000409766 C2orf48Q96LS8 159 aa13.35□□□□□ -0.27
USP39-204ENST00000409766 S100A7L2Q5SY68 101 aa13.34□□□□□ -0.27
USP39-204ENST00000409766 Q6ZRU5 148 aa13.34□□□□□ -0.27
USP39-204ENST00000409766 MT-ATP8P03928 68 aa13.33□□□□□ -0.28
USP39-204ENST00000409766 SCGB1A1P11684 91 aa13.32□□□□□ -0.28
USP39-204ENST00000409766 XAGE1AQ9HD64 81 aa13.32□□□□□ -0.28
USP39-204ENST00000409766 COL7A1Q02388 2944 aa13.31□□□□□ -0.28
USP39-204ENST00000409766 FAM240AA0A1B0GVK7 77 aa13.31□□□□□ -0.28
USP39-204ENST00000409766 IGLV6-57P01721 117 aa13.3□□□□□ -0.28
USP39-204ENST00000409766 RPL18AQ02543 176 aaKnown RBP13.3□□□□□ -0.28
USP39-204ENST00000409766 C6orf99Q4VX62 202 aa13.3□□□□□ -0.28
USP39-204ENST00000409766 A0A1B0GX51 115 aa13.29□□□□□ -0.28
USP39-204ENST00000409766 F8WDY8 70 aa13.29□□□□□ -0.28
USP39-204ENST00000409766 LINC00167Q96N53 147 aa13.28□□□□□ -0.28
USP39-204ENST00000409766 NDUFC2-KCTD14E9PQ53 114 aa13.27□□□□□ -0.28
USP39-204ENST00000409766 SLPIP03973 132 aa13.27□□□□□ -0.28
USP39-204ENST00000409766 Q8N814 137 aa13.27□□□□□ -0.28
USP39-204ENST00000409766 UPK3BQ9BT76 320 aa13.26□□□□□ -0.29
USP39-204ENST00000409766 DNAH1Q9P2D7 4330 aa13.26□□□□□ -0.29
USP39-204ENST00000409766 ORMDL1Q9P0S3 153 aa13.25□□□□□ -0.29
USP39-204ENST00000409766 INAFM2P0DMQ5 153 aa13.25□□□□□ -0.29
USP39-204ENST00000409766 DNAH9Q9NYC9 4486 aa13.25□□□□□ -0.29
USP39-204ENST00000409766 SYCNQ0VAF6 134 aa13.24□□□□□ -0.29
USP39-204ENST00000409766 C9orf129Q5T035 196 aaKnown RBP13.24□□□□□ -0.29
USP39-204ENST00000409766 STAB2Q8WWQ8 2551 aa13.24□□□□□ -0.29
USP39-204ENST00000409766 VPREB1P12018 145 aa13.23□□□□□ -0.29
USP39-204ENST00000409766 OBSCN-AS1Q96MR7 158 aa13.23□□□□□ -0.29
USP39-204ENST00000409766 TRBV10-3A0A0K0K1G6 114 aa13.23□□□□□ -0.29
USP39-204ENST00000409766 ACYP1P07311 99 aa13.22□□□□□ -0.29
USP39-204ENST00000409766 Q6ZRP5 223 aa13.22□□□□□ -0.29
USP39-204ENST00000409766 LINC00575Q6W349 94 aa13.22□□□□□ -0.29
USP39-204ENST00000409766 GAGE2EQ4V326 116 aa13.2□□□□□ -0.3
USP39-204ENST00000409766 GAGE2DQ9UEU5 116 aa13.2□□□□□ -0.3
USP39-204ENST00000409766 CASC10Q5T4H9 136 aa13.2□□□□□ -0.3
USP39-204ENST00000409766 TRAV23DV6A0A075B6W5 121 aa13.19□□□□□ -0.3
USP39-204ENST00000409766 SNCGO76070 127 aa13.18□□□□□ -0.3
USP39-204ENST00000409766 USP17L23D6RBM5 183 aa13.18□□□□□ -0.3
USP39-204ENST00000409766 RMI2Q96E14 147 aa13.18□□□□□ -0.3
USP39-204ENST00000409766 B9D2Q9BPU9 175 aa13.18□□□□□ -0.3
USP39-204ENST00000409766 M0R378 163 aa13.17□□□□□ -0.3
USP39-204ENST00000409766 TMEM256-PLSCR3K7ERE1 68 aa13.16□□□□□ -0.3
USP39-204ENST00000409766 C14orf132Q9NPU4 83 aa13.16□□□□□ -0.3
USP39-204ENST00000409766 hADV29S1A0JD25 119 aa13.15□□□□□ -0.3
USP39-204ENST00000409766 TTC32Q5I0X7 151 aa13.15□□□□□ -0.3
USP39-204ENST00000409766 DIRC1Q969H9 104 aa13.15□□□□□ -0.3
USP39-204ENST00000409766 ZNF73O43830 326 aaPredicted RBP13.14□□□□□ -0.31
USP39-204ENST00000409766 TLX1NBP0CAT3 122 aa13.14□□□□□ -0.31
USP39-204ENST00000409766 GAGE2AQ6NT46 116 aa13.13□□□□□ -0.31
USP39-204ENST00000409766 LYSTQ99698 3801 aa13.13□□□□□ -0.31
USP39-204ENST00000409766 SDIM1Q6ZPB5 146 aa13.13□□□□□ -0.31
USP39-204ENST00000409766 SMCR5Q8TEV8 140 aa13.11□□□□□ -0.31
USP39-204ENST00000409766 APLNQ9ULZ1 77 aa13.11□□□□□ -0.31
USP39-204ENST00000409766 TRBV7-6A0A0J9YX20 115 aa13.1□□□□□ -0.31
USP39-204ENST00000409766 DYNC2H1Q8NCM8 4307 aaKnown RBP13.1□□□□□ -0.31
USP39-204ENST00000409766 JMJD7-PLA2G4BH0Y9G9 81 aa13.1□□□□□ -0.31
USP39-204ENST00000409766 ELOF1P60002 83 aaKnown RBP13.1□□□□□ -0.31
USP39-204ENST00000409766 GAGE2BQ13066 116 aa13.1□□□□□ -0.31
USP39-204ENST00000409766 COX7BP24311 80 aa13.08□□□□□ -0.31
USP39-204ENST00000409766 Q6Q795 121 aa13.08□□□□□ -0.31
USP39-204ENST00000409766 KRTAP1-5Q9BYS1 174 aa13.08□□□□□ -0.31
USP39-204ENST00000409766 A0A1B0GV72 72 aa13.08□□□□□ -0.32
USP39-204ENST00000409766 SERTAD4-AS1Q5TG53 156 aa13.07□□□□□ -0.32
USP39-204ENST00000409766 Q6ZQY7 126 aa13.06□□□□□ -0.32
USP39-204ENST00000409766 CSMD3Q7Z407 3707 aa13.06□□□□□ -0.32
USP39-204ENST00000409766 LINC00643Q86TS7 51 aa13.05□□□□□ -0.32
USP39-204ENST00000409766 PLA2G2DQ9UNK4 145 aa13.05□□□□□ -0.32
USP39-204ENST00000409766 NKAPP1Q8N9T2 125 aa13.05□□□□□ -0.32
USP39-204ENST00000409766 TRBV7-7A0A0K0K1E9 115 aa13.03□□□□□ -0.32
USP39-204ENST00000409766 UBE2DNLQ8IWF7 75 aa13.03□□□□□ -0.32
USP39-204ENST00000409766 DNHD1Q96M86 4753 aa13.03□□□□□ -0.32
USP39-204ENST00000409766 CCKP06307 115 aa13.03□□□□□ -0.32
USP39-204ENST00000409766 LINC00528Q8N1L1 170 aa13.02□□□□□ -0.33
USP39-204ENST00000409766 C7orf33Q8WU49 177 aa13.02□□□□□ -0.33
USP39-204ENST00000409766 KCNQ1DNQ9H478 68 aa13.02□□□□□ -0.33
USP39-204ENST00000409766 H3BQ85 93 aa13.01□□□□□ -0.33
USP39-204ENST00000409766 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.01□□□□□ -0.33
USP39-204ENST00000409766 DNAH10Q8IVF4 4471 aa13.01□□□□□ -0.33
USP39-204ENST00000409766 NHLRC4P0CG21 123 aaPredicted RBP13□□□□□ -0.33
USP39-204ENST00000409766 IGLV5-37A0A075B6J1 123 aa13□□□□□ -0.33
USP39-204ENST00000409766 LINC00846Q9NV44 126 aa13□□□□□ -0.33
USP39-204ENST00000409766 TENM2Q9NT68 2774 aa12.99□□□□□ -0.33
USP39-204ENST00000409766 FAM168BA1KXE4 195 aa12.99□□□□□ -0.33
USP39-204ENST00000409766 DNAH7Q8WXX0 4024 aa12.98□□□□□ -0.33
USP39-204ENST00000409766 LOC107984640A0A0U1RRK4 108 aa12.98□□□□□ -0.33
USP39-204ENST00000409766 KRTAP7-1Q8IUC3 87 aa12.98□□□□□ -0.33
USP39-204ENST00000409766 IMUPQ9GZP8 106 aa12.97□□□□□ -0.33
USP39-204ENST00000409766 LAMTOR3Q9UHA4 124 aa12.97□□□□□ -0.33
USP39-204ENST00000409766 RBM3P98179 157 aaKnown RBP12.96□□□□□ -0.33
USP39-204ENST00000409766 KRTAP21-3Q3LHN1 58 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms