RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 Q6ZRP5 223 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 SMR3BP02814 79 aaPredicted RBP5.13□□□□□ -1.59
SCN9A-202ENST00000409435 KRTAP10-3P60369 221 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 COX6B2Q6YFQ2 88 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 A0A087WYN8 130 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 M0QY20 66 aa5.13□□□□□ -1.59
SCN9A-202ENST00000409435 C9orf116Q5BN46 136 aaPredicted RBP5.12□□□□□ -1.59
SCN9A-202ENST00000409435 C19orf73Q9NVV2 129 aa5.12□□□□□ -1.59
SCN9A-202ENST00000409435 LINC00959A0A1B0GUT2 108 aa5.12□□□□□ -1.59
SCN9A-202ENST00000409435 KLLNB2CW77 178 aa5.12□□□□□ -1.59
SCN9A-202ENST00000409435 TLN2Q9Y4G6 2542 aa5.12□□□□□ -1.59
SCN9A-202ENST00000409435 HELZ2Q9BYK8 2649 aaKnown RBP5.12□□□□□ -1.59
SCN9A-202ENST00000409435 LINC01554Q52M75 96 aa5.11□□□□□ -1.59
SCN9A-202ENST00000409435 TP53AIP1Q9HCN2 124 aa5.11□□□□□ -1.59
SCN9A-202ENST00000409435 CRIPTQ9P021 101 aa5.11□□□□□ -1.59
SCN9A-202ENST00000409435 LINC00588Q9Y4M8 146 aa5.11□□□□□ -1.59
SCN9A-202ENST00000409435 C2orf48Q96LS8 159 aa5.11□□□□□ -1.59
SCN9A-202ENST00000409435 ERC2-IT1O76042 136 aa5.1□□□□□ -1.59
SCN9A-202ENST00000409435 SMIM29Q86T20 159 aa5.1□□□□□ -1.59
SCN9A-202ENST00000409435 Q8IZM0 81 aa5.1□□□□□ -1.59
SCN9A-202ENST00000409435 FAM19A4Q96LR4 140 aa5.1□□□□□ -1.59
SCN9A-202ENST00000409435 TSHBP01222 138 aa5.1□□□□□ -1.59
SCN9A-202ENST00000409435 LCE6AA0A183 80 aa5.1□□□□□ -1.59
SCN9A-202ENST00000409435 C6orf48Q9UBA6 75 aa5.1□□□□□ -1.59
SCN9A-202ENST00000409435 A8MUN3 132 aa5.09□□□□□ -1.59
SCN9A-202ENST00000409435 TYMSOSQ8TAI1 123 aa5.09□□□□□ -1.59
SCN9A-202ENST00000409435 BRWD1-AS2P59051 145 aa5.08□□□□□ -1.6
SCN9A-202ENST00000409435 ACANP16112 2415 aa5.08□□□□□ -1.6
SCN9A-202ENST00000409435 Q8NAQ8 132 aa5.08□□□□□ -1.6
SCN9A-202ENST00000409435 UQCR11O14957 56 aa5.08□□□□□ -1.6
SCN9A-202ENST00000409435 CYSRT1A8MQ03 144 aa5.07□□□□□ -1.6
SCN9A-202ENST00000409435 A0A087WSZ3 146 aa5.07□□□□□ -1.6
SCN9A-202ENST00000409435 P0C879 139 aa5.07□□□□□ -1.6
SCN9A-202ENST00000409435 LOC101927531A0A1B0GV80 90 aa5.06□□□□□ -1.6
SCN9A-202ENST00000409435 POLR2KP53803 58 aaKnown RBP5.06□□□□□ -1.6
SCN9A-202ENST00000409435 LUZP6Q538Z0 58 aa5.06□□□□□ -1.6
SCN9A-202ENST00000409435 CRIP3Q6Q6R5 217 aa5.06□□□□□ -1.6
SCN9A-202ENST00000409435 CRIP1P50238 77 aa5.05□□□□□ -1.6
SCN9A-202ENST00000409435 DSCAML1Q8TD84 2053 aa5.05□□□□□ -1.6
SCN9A-202ENST00000409435 ELOF1P60002 83 aaKnown RBP5.05□□□□□ -1.6
SCN9A-202ENST00000409435 TANC2Q9HCD6 1990 aa5.05□□□□□ -1.6
SCN9A-202ENST00000409435 IGIPA6NJ69 53 aa5.05□□□□□ -1.6
SCN9A-202ENST00000409435 LINC00528Q8N1L1 170 aa5.05□□□□□ -1.6
SCN9A-202ENST00000409435 LINC00310P59036 64 aa5.04□□□□□ -1.6
SCN9A-202ENST00000409435 DEFB116Q30KQ4 102 aa5.04□□□□□ -1.6
SCN9A-202ENST00000409435 PRR15Q8IV56 129 aa5.04□□□□□ -1.6
SCN9A-202ENST00000409435 Q9BRP9 147 aa5.04□□□□□ -1.6
SCN9A-202ENST00000409435 LINC01600Q96MT4 127 aa5.04□□□□□ -1.6
SCN9A-202ENST00000409435 A0A1B0GW54 56 aa5.04□□□□□ -1.6
SCN9A-202ENST00000409435 APLNQ9ULZ1 77 aa5.04□□□□□ -1.6
SCN9A-202ENST00000409435 PRR9Q5T870 116 aa5.03□□□□□ -1.6
SCN9A-202ENST00000409435 MIR22HGQ0VDD5 57 aa5.03□□□□□ -1.6
SCN9A-202ENST00000409435 HCFC1P51610 2035 aa5.03□□□□□ -1.6
SCN9A-202ENST00000409435 KIF25-AS1Q9Y6Z4 181 aa5.03□□□□□ -1.6
SCN9A-202ENST00000409435 USP9YO00507 2555 aaPredicted RBP5.03□□□□□ -1.6
SCN9A-202ENST00000409435 IGKV2D-30A0A075B6S6 120 aa5.03□□□□□ -1.6
SCN9A-202ENST00000409435 IGKV2-30P06310 120 aa5.03□□□□□ -1.6
SCN9A-202ENST00000409435 IGLV8-61A0A075B6I0 122 aa5.02□□□□□ -1.61
SCN9A-202ENST00000409435 SMIM1B2RUZ4 78 aa5.02□□□□□ -1.61
SCN9A-202ENST00000409435 A0A087WTM6 91 aa5.02□□□□□ -1.61
SCN9A-202ENST00000409435 TSPEAR-AS2P59090 65 aa5.02□□□□□ -1.61
SCN9A-202ENST00000409435 CDC42SE2Q9NRR3 84 aa5.02□□□□□ -1.61
SCN9A-202ENST00000409435 A0A0A0MQY5 61 aa5.02□□□□□ -1.61
SCN9A-202ENST00000409435 SPACA4Q8TDM5 124 aa5.02□□□□□ -1.61
SCN9A-202ENST00000409435 ADAMTSL4-AS1Q5T5F5 129 aa5.01□□□□□ -1.61
SCN9A-202ENST00000409435 LINC00242Q5T6M2 205 aa5.01□□□□□ -1.61
SCN9A-202ENST00000409435 COA5Q86WW8 74 aa5.01□□□□□ -1.61
SCN9A-202ENST00000409435 UNQ6190/PRO20217Q6UXQ8 127 aa5.01□□□□□ -1.61
SCN9A-202ENST00000409435 URB1-AS1Q96HZ7 61 aa5.01□□□□□ -1.61
SCN9A-202ENST00000409435 CNFNQ9BYD5 112 aa5.01□□□□□ -1.61
SCN9A-202ENST00000409435 A0A1B0GUV1 79 aa5.01□□□□□ -1.61
SCN9A-202ENST00000409435 TRAV22A0A0B4J277 110 aa5□□□□□ -1.61
SCN9A-202ENST00000409435 SMCPP49901 116 aaPredicted RBP5□□□□□ -1.61
SCN9A-202ENST00000409435 RBM12B-AS1Q9P1G2 102 aa5□□□□□ -1.61
SCN9A-202ENST00000409435 PRO0461Q9UI25 63 aa5□□□□□ -1.61
SCN9A-202ENST00000409435 DNAH10OSP0CZ25 163 aa4.99□□□□□ -1.61
SCN9A-202ENST00000409435 IGLV4-60A0A075B6I1 120 aa4.98□□□□□ -1.61
SCN9A-202ENST00000409435 Q6ZRU5 148 aa4.98□□□□□ -1.61
SCN9A-202ENST00000409435 C11orf72Q8NBR9 251 aa4.97□□□□□ -1.61
SCN9A-202ENST00000409435 CDC42SE1Q9NRR8 79 aa4.97□□□□□ -1.61
SCN9A-202ENST00000409435 PRR3P79522 188 aaKnown RBP4.97□□□□□ -1.61
SCN9A-202ENST00000409435 GAS8-AS1O95177 125 aa4.97□□□□□ -1.61
SCN9A-202ENST00000409435 CHTF8P0CG12 524 aa4.97□□□□□ -1.61
SCN9A-202ENST00000409435 C22orf24Q9Y442 160 aa4.97□□□□□ -1.61
SCN9A-202ENST00000409435 LOC110117498A0A087WWA1 95 aa4.96□□□□□ -1.62
SCN9A-202ENST00000409435 AMELXQ99217 191 aa4.96□□□□□ -1.62
SCN9A-202ENST00000409435 KLKP1Q107X0 134 aa4.96□□□□□ -1.62
SCN9A-202ENST00000409435 COL27A1Q8IZC6 1860 aaPredicted RBP4.96□□□□□ -1.62
SCN9A-202ENST00000409435 PCSK5Q92824 1860 aa4.95□□□□□ -1.62
SCN9A-202ENST00000409435 TNP2Q05952 138 aa4.95□□□□□ -1.62
SCN9A-202ENST00000409435 PHF5AQ7RTV0 110 aaKnown RBP4.95□□□□□ -1.62
SCN9A-202ENST00000409435 ZNF575Q86XF7 245 aa4.94□□□□□ -1.62
SCN9A-202ENST00000409435 C11orf21Q9P2W6 132 aa4.94□□□□□ -1.62
SCN9A-202ENST00000409435 Q6ZQT0 140 aa4.94□□□□□ -1.62
SCN9A-202ENST00000409435 LINC00304Q8N9R0 145 aa4.94□□□□□ -1.62
SCN9A-202ENST00000409435 CSNK1G2-AS1Q8NCQ2 148 aa4.93□□□□□ -1.62
SCN9A-202ENST00000409435 M0R2T5 61 aa4.93□□□□□ -1.62
SCN9A-202ENST00000409435 A0A096LNJ9 63 aa4.92□□□□□ -1.62
SCN9A-202ENST00000409435 KIAA0087Q14695 138 aa4.92□□□□□ -1.62
SCN9A-202ENST00000409435 MOBPQ13875 183 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms