RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TTC32Q5I0X7 151 aa12.15□□□□□ -0.46
CCDC88C-203ENST00000389856 KRTAP26-1Q6PEX3 210 aa12.15□□□□□ -0.46
CCDC88C-203ENST00000389856 LINC00337Q8N6G1 96 aa12.15□□□□□ -0.46
CCDC88C-203ENST00000389856 FAM240AA0A1B0GVK7 77 aa12.15□□□□□ -0.47
CCDC88C-203ENST00000389856 NDUFC2O95298 119 aa12.14□□□□□ -0.47
CCDC88C-203ENST00000389856 TEX49A0A1B0GTD5 131 aa12.13□□□□□ -0.47
CCDC88C-203ENST00000389856 C2orf48Q96LS8 159 aa12.12□□□□□ -0.47
CCDC88C-203ENST00000389856 SMIM11BQ8TCY0 68 aa12.11□□□□□ -0.47
CCDC88C-203ENST00000389856 GVQW2A0A096LPI5 108 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-203ENST00000389856 ACYP1P07311 99 aa12.09□□□□□ -0.47
CCDC88C-203ENST00000389856 BAALC-AS2P0C853 105 aa12.08□□□□□ -0.48
CCDC88C-203ENST00000389856 XGP55808 180 aa12.08□□□□□ -0.48
CCDC88C-203ENST00000389856 WWC2-AS2Q96NR7 200 aa12.08□□□□□ -0.48
CCDC88C-203ENST00000389856 CAMK2N2Q96S95 79 aa12.08□□□□□ -0.48
CCDC88C-203ENST00000389856 C15orf56Q8N910 161 aa12.08□□□□□ -0.48
CCDC88C-203ENST00000389856 A0A1B0GX51 115 aa12.07□□□□□ -0.48
CCDC88C-203ENST00000389856 TGP01266 2768 aa12.06□□□□□ -0.48
CCDC88C-203ENST00000389856 DNAL4O96015 105 aa12.06□□□□□ -0.48
CCDC88C-203ENST00000389856 HIGD2BQ4VC39 106 aa12.06□□□□□ -0.48
CCDC88C-203ENST00000389856 OR13C6PQ8NH95 151 aa12.06□□□□□ -0.48
CCDC88C-203ENST00000389856 PRKDCP78527 4128 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-203ENST00000389856 MT-ATP8P03928 68 aa12.05□□□□□ -0.48
CCDC88C-203ENST00000389856 INAFM2P0DMQ5 153 aa12.05□□□□□ -0.48
CCDC88C-203ENST00000389856 UNQ6190/PRO20217Q6UXQ8 127 aa12.05□□□□□ -0.48
CCDC88C-203ENST00000389856 C6orf223Q8N319 242 aa12.05□□□□□ -0.48
CCDC88C-203ENST00000389856 FAM218AQ96MZ4 157 aa12.05□□□□□ -0.48
CCDC88C-203ENST00000389856 NBDYA0A0U1RRE5 68 aa12.04□□□□□ -0.48
CCDC88C-203ENST00000389856 PSCAO43653 123 aa12.04□□□□□ -0.48
CCDC88C-203ENST00000389856 TMEM126AQ9H061 195 aa12.04□□□□□ -0.48
CCDC88C-203ENST00000389856 USP17L23D6RBM5 183 aa12.02□□□□□ -0.49
CCDC88C-203ENST00000389856 SNCGO76070 127 aa12.02□□□□□ -0.49
CCDC88C-203ENST00000389856 LINC00526Q96FQ7 95 aa12.02□□□□□ -0.49
CCDC88C-203ENST00000389856 SYCNQ0VAF6 134 aa12.01□□□□□ -0.49
CCDC88C-203ENST00000389856 C10orf25Q5T742 122 aa12.01□□□□□ -0.49
CCDC88C-203ENST00000389856 DYNC2H1Q8NCM8 4307 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-203ENST00000389856 C14orf177Q52M58 125 aa12□□□□□ -0.49
CCDC88C-203ENST00000389856 Q6Q795 121 aa12□□□□□ -0.49
CCDC88C-203ENST00000389856 C6orf48Q9UBA6 75 aa12□□□□□ -0.49
CCDC88C-203ENST00000389856 KRTAP1-5Q9BYS1 174 aa12□□□□□ -0.49
CCDC88C-203ENST00000389856 A0A1B0GV72 72 aa11.99□□□□□ -0.49
CCDC88C-203ENST00000389856 C9orf116Q5BN46 136 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-203ENST00000389856 A0A087WYN8 130 aa11.97□□□□□ -0.49
CCDC88C-203ENST00000389856 C3orf84H3BNL1 204 aa11.97□□□□□ -0.49
CCDC88C-203ENST00000389856 Q6ZRU5 148 aa11.97□□□□□ -0.49
CCDC88C-203ENST00000389856 LINC00167Q96N53 147 aa11.97□□□□□ -0.49
CCDC88C-203ENST00000389856 C22orf24Q9Y442 160 aa11.97□□□□□ -0.49
CCDC88C-203ENST00000389856 NDUFC2-KCTD14E9PQ53 114 aa11.95□□□□□ -0.5
CCDC88C-203ENST00000389856 LECT2O14960 151 aa11.95□□□□□ -0.5
CCDC88C-203ENST00000389856 GAGE2BQ13066 116 aa11.95□□□□□ -0.5
CCDC88C-203ENST00000389856 GAGE2EQ4V326 116 aa11.95□□□□□ -0.5
CCDC88C-203ENST00000389856 GAGE2DQ9UEU5 116 aa11.95□□□□□ -0.5
CCDC88C-203ENST00000389856 OBSCN-AS1Q96MR7 158 aa11.94□□□□□ -0.5
CCDC88C-203ENST00000389856 ORMDL1Q9P0S3 153 aa11.94□□□□□ -0.5
CCDC88C-203ENST00000389856 CASC10Q5T4H9 136 aa11.93□□□□□ -0.5
CCDC88C-203ENST00000389856 S100A7L2Q5SY68 101 aa11.93□□□□□ -0.5
CCDC88C-203ENST00000389856 DNAH7Q8WXX0 4024 aa11.92□□□□□ -0.5
CCDC88C-203ENST00000389856 TLX1NBP0CAT3 122 aa11.91□□□□□ -0.5
CCDC88C-203ENST00000389856 PKIGQ9Y2B9 76 aa11.91□□□□□ -0.5
CCDC88C-203ENST00000389856 H3BQ85 93 aa11.89□□□□□ -0.51
CCDC88C-203ENST00000389856 SDIM1Q6ZPB5 146 aa11.89□□□□□ -0.51
CCDC88C-203ENST00000389856 Q8N814 137 aa11.89□□□□□ -0.51
CCDC88C-203ENST00000389856 CSMD3Q7Z407 3707 aa11.89□□□□□ -0.51
CCDC88C-203ENST00000389856 TRBV7-7A0A0K0K1E9 115 aa11.89□□□□□ -0.51
CCDC88C-203ENST00000389856 LINC00643Q86TS7 51 aa11.89□□□□□ -0.51
CCDC88C-203ENST00000389856 IMUPQ9GZP8 106 aa11.89□□□□□ -0.51
CCDC88C-203ENST00000389856 IGLV6-57P01721 117 aa11.88□□□□□ -0.51
CCDC88C-203ENST00000389856 TMEM256-PLSCR3K7ERE1 68 aa11.87□□□□□ -0.51
CCDC88C-203ENST00000389856 NCR3O14931 201 aa11.87□□□□□ -0.51
CCDC88C-203ENST00000389856 CNBPP62633 177 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-203ENST00000389856 PRR3P79522 188 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-203ENST00000389856 JMJD7-PLA2G4BH0Y9G9 81 aa11.86□□□□□ -0.51
CCDC88C-203ENST00000389856 LY6G6CO95867 125 aa11.86□□□□□ -0.51
CCDC88C-203ENST00000389856 LOC107984640A0A0U1RRK4 108 aa11.86□□□□□ -0.51
CCDC88C-203ENST00000389856 M0R2N4 97 aa11.86□□□□□ -0.51
CCDC88C-203ENST00000389856 RPL18AQ02543 176 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-203ENST00000389856 Q6ZR54 194 aa11.86□□□□□ -0.51
CCDC88C-203ENST00000389856 C6orf99Q4VX62 202 aa11.85□□□□□ -0.51
CCDC88C-203ENST00000389856 LINC00476Q8WZB0 136 aa11.85□□□□□ -0.51
CCDC88C-203ENST00000389856 XAGE1AQ9HD64 81 aa11.85□□□□□ -0.51
CCDC88C-203ENST00000389856 TENM2Q9NT68 2774 aa11.85□□□□□ -0.51
CCDC88C-203ENST00000389856 LINC00575Q6W349 94 aa11.84□□□□□ -0.51
CCDC88C-203ENST00000389856 Q6ZRN7 208 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-203ENST00000389856 Q6ZRP5 223 aa11.83□□□□□ -0.52
CCDC88C-203ENST00000389856 Q8NDZ9 215 aa11.83□□□□□ -0.52
CCDC88C-203ENST00000389856 TRBV7-6A0A0J9YX20 115 aa11.82□□□□□ -0.52
CCDC88C-203ENST00000389856 SLPIP03973 132 aa11.82□□□□□ -0.52
CCDC88C-203ENST00000389856 GAGE2AQ6NT46 116 aa11.82□□□□□ -0.52
CCDC88C-203ENST00000389856 PLECQ15149 4684 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-203ENST00000389856 GHRHP01286 108 aa11.81□□□□□ -0.52
CCDC88C-203ENST00000389856 C1orf134Q5TEV5 83 aa11.81□□□□□ -0.52
CCDC88C-203ENST00000389856 ANAPC13Q9BS18 74 aa11.81□□□□□ -0.52
CCDC88C-203ENST00000389856 STARD9Q9P2P6 4700 aa11.8□□□□□ -0.52
CCDC88C-203ENST00000389856 LRCOL1A6NCL2 159 aa11.8□□□□□ -0.52
CCDC88C-203ENST00000389856 hADV29S1A0JD25 119 aa11.79□□□□□ -0.52
CCDC88C-203ENST00000389856 NDUFV3P56181 108 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-203ENST00000389856 PLA2G2DQ9UNK4 145 aa11.79□□□□□ -0.52
CCDC88C-203ENST00000389856 M0R378 163 aa11.78□□□□□ -0.52
CCDC88C-203ENST00000389856 DIRC1Q969H9 104 aa11.78□□□□□ -0.52
CCDC88C-203ENST00000389856 C14orf132Q9NPU4 83 aa11.78□□□□□ -0.52
CCDC88C-203ENST00000389856 TRAV23DV6A0A075B6W5 121 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms