RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 OXLD1Q5BKU9 147 aa13.64□□□□□ -0.23
CCDC88B-202ENST00000356786 SMIM29Q86T20 159 aa13.64□□□□□ -0.23
CCDC88B-202ENST00000356786 IL17DQ8TAD2 202 aa13.64□□□□□ -0.23
CCDC88B-202ENST00000356786 PCSK5Q92824 1860 aa13.64□□□□□ -0.23
CCDC88B-202ENST00000356786 IGHV6-1A0A0B4J1U7 121 aa13.64□□□□□ -0.23
CCDC88B-202ENST00000356786 hDV103S1A0JD37 113 aa13.64□□□□□ -0.23
CCDC88B-202ENST00000356786 Q6ZRU5 148 aa13.64□□□□□ -0.23
CCDC88B-202ENST00000356786 LAMA2P24043 3122 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-202ENST00000356786 Q9BRP9 147 aa13.63□□□□□ -0.23
CCDC88B-202ENST00000356786 FHL3Q13643 280 aa13.63□□□□□ -0.23
CCDC88B-202ENST00000356786 C2orf48Q96LS8 159 aa13.62□□□□□ -0.23
CCDC88B-202ENST00000356786 LY6G6DO95868 133 aa13.62□□□□□ -0.23
CCDC88B-202ENST00000356786 Q6ZTC4 211 aa13.61□□□□□ -0.23
CCDC88B-202ENST00000356786 C7orf33Q8WU49 177 aa13.61□□□□□ -0.23
CCDC88B-202ENST00000356786 M0R2N4 97 aa13.6□□□□□ -0.23
CCDC88B-202ENST00000356786 EPG5Q9HCE0 2579 aa13.59□□□□□ -0.23
CCDC88B-202ENST00000356786 LITAFQ99732 161 aa13.59□□□□□ -0.23
CCDC88B-202ENST00000356786 LINC00474Q9P2X8 69 aa13.59□□□□□ -0.23
CCDC88B-202ENST00000356786 KIAA0087Q14695 138 aa13.58□□□□□ -0.24
CCDC88B-202ENST00000356786 LYPD5Q6UWN5 251 aa13.57□□□□□ -0.24
CCDC88B-202ENST00000356786 C1orf64Q8NEQ6 169 aa13.57□□□□□ -0.24
CCDC88B-202ENST00000356786 SMCR5Q8TEV8 140 aa13.57□□□□□ -0.24
CCDC88B-202ENST00000356786 NHLRC4P0CG21 123 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-202ENST00000356786 LIMD2Q9BT23 127 aa13.57□□□□□ -0.24
CCDC88B-202ENST00000356786 ACANP16112 2415 aa13.56□□□□□ -0.24
CCDC88B-202ENST00000356786 Q6ZQT0 140 aa13.56□□□□□ -0.24
CCDC88B-202ENST00000356786 TM2D3Q9BRN9 247 aa13.55□□□□□ -0.24
CCDC88B-202ENST00000356786 FASNP49327 2511 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-202ENST00000356786 PRLHP81277 87 aa13.53□□□□□ -0.24
CCDC88B-202ENST00000356786 PRUNE2Q8WUY3 3088 aa13.53□□□□□ -0.24
CCDC88B-202ENST00000356786 F8WDY8 70 aa13.52□□□□□ -0.24
CCDC88B-202ENST00000356786 UNC80Q8N2C7 3258 aa13.5□□□□□ -0.25
CCDC88B-202ENST00000356786 CIRBP-AS1Q8TBR5 109 aa13.5□□□□□ -0.25
CCDC88B-202ENST00000356786 LOC110117498A0A087WWA1 95 aa13.49□□□□□ -0.25
CCDC88B-202ENST00000356786 SMR3AQ99954 134 aa13.47□□□□□ -0.25
CCDC88B-202ENST00000356786 C22orf24Q9Y442 160 aa13.47□□□□□ -0.25
CCDC88B-202ENST00000356786 C6orf48Q9UBA6 75 aa13.47□□□□□ -0.25
CCDC88B-202ENST00000356786 RETNLBQ9BQ08 111 aa13.46□□□□□ -0.26
CCDC88B-202ENST00000356786 EIF4EBP3O60516 100 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-202ENST00000356786 SPINK1P00995 79 aa13.44□□□□□ -0.26
CCDC88B-202ENST00000356786 ELOF1P60002 83 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-202ENST00000356786 C16orf95Q9H693 158 aa13.41□□□□□ -0.26
CCDC88B-202ENST00000356786 ANKRD17O75179 2603 aaKnown RBP13.41□□□□□ -0.26
CCDC88B-202ENST00000356786 LINC01556Q5JQF7 62 aa13.39□□□□□ -0.27
CCDC88B-202ENST00000356786 Q8NBF4 154 aa13.39□□□□□ -0.27
CCDC88B-202ENST00000356786 LINC00167Q96N53 147 aa13.39□□□□□ -0.27
CCDC88B-202ENST00000356786 A0A1B0GW54 56 aa13.38□□□□□ -0.27
CCDC88B-202ENST00000356786 SPAG11AQ6PDA7 123 aa13.37□□□□□ -0.27
CCDC88B-202ENST00000356786 A0A0C4DFX4 3053 aa13.36□□□□□ -0.27
CCDC88B-202ENST00000356786 CDH23Q9H251 3354 aa13.35□□□□□ -0.27
CCDC88B-202ENST00000356786 TP53AIP1Q9HCN2 124 aa13.3□□□□□ -0.28
CCDC88B-202ENST00000356786 KLK9Q2XQG4 91 aa13.3□□□□□ -0.28
CCDC88B-202ENST00000356786 LINC00476Q8WZB0 136 aa13.3□□□□□ -0.28
CCDC88B-202ENST00000356786 A0A1B0GU69 56 aa13.29□□□□□ -0.28
CCDC88B-202ENST00000356786 FSHBP01225 129 aa13.29□□□□□ -0.28
CCDC88B-202ENST00000356786 X6R8D5 127 aa13.29□□□□□ -0.28
CCDC88B-202ENST00000356786 Q6ZRX8 168 aa13.29□□□□□ -0.28
CCDC88B-202ENST00000356786 USP24Q9UPU5 2620 aa13.28□□□□□ -0.28
CCDC88B-202ENST00000356786 LY6G6CO95867 125 aa13.28□□□□□ -0.28
CCDC88B-202ENST00000356786 LINC00336Q6ZUF6 198 aa13.28□□□□□ -0.28
CCDC88B-202ENST00000356786 TRIOO75962 3097 aa13.28□□□□□ -0.28
CCDC88B-202ENST00000356786 H3BPC8 53 aa13.28□□□□□ -0.28
CCDC88B-202ENST00000356786 TRAV22A0A0B4J277 110 aa13.27□□□□□ -0.29
CCDC88B-202ENST00000356786 KLKP1Q107X0 134 aa13.27□□□□□ -0.29
CCDC88B-202ENST00000356786 ST20-AS1Q8NBB2 130 aa13.27□□□□□ -0.29
CCDC88B-202ENST00000356786 A8MUN3 132 aa13.26□□□□□ -0.29
CCDC88B-202ENST00000356786 IGKV2D-30A0A075B6S6 120 aa13.25□□□□□ -0.29
CCDC88B-202ENST00000356786 IGKV2-30P06310 120 aa13.25□□□□□ -0.29
CCDC88B-202ENST00000356786 ERC2-IT1O76042 136 aa13.25□□□□□ -0.29
CCDC88B-202ENST00000356786 TRBV7-4A0A0J9YYF1 115 aa13.24□□□□□ -0.29
CCDC88B-202ENST00000356786 IGLV6-57P01721 117 aa13.24□□□□□ -0.29
CCDC88B-202ENST00000356786 ACYP2P14621 99 aa13.22□□□□□ -0.29
CCDC88B-202ENST00000356786 RPL37AP61513 92 aaKnown RBP13.21□□□□□ -0.29
CCDC88B-202ENST00000356786 XIRP2A4UGR9 3374 aa13.21□□□□□ -0.29
CCDC88B-202ENST00000356786 H7BZZ5 65 aa13.21□□□□□ -0.3
CCDC88B-202ENST00000356786 IGLV5-52A0A0A0MRZ9 124 aa13.2□□□□□ -0.3
CCDC88B-202ENST00000356786 COL27A1Q8IZC6 1860 aaPredicted RBP13.19□□□□□ -0.3
CCDC88B-202ENST00000356786 VPREB1P12018 145 aa13.19□□□□□ -0.3
CCDC88B-202ENST00000356786 SERTAD4-AS1Q5TG53 156 aa13.19□□□□□ -0.3
CCDC88B-202ENST00000356786 K7EQZ3 153 aa13.18□□□□□ -0.3
CCDC88B-202ENST00000356786 NUPR2A6NF83 97 aa13.17□□□□□ -0.3
CCDC88B-202ENST00000356786 GVQW2A0A096LPI5 108 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-202ENST00000356786 ATP11AUNQ6ZP68 121 aa13.16□□□□□ -0.3
CCDC88B-202ENST00000356786 MOBPQ13875 183 aa13.16□□□□□ -0.3
CCDC88B-202ENST00000356786 C9orf129Q5T035 196 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-202ENST00000356786 Q6ZRP5 223 aa13.14□□□□□ -0.31
CCDC88B-202ENST00000356786 ZNF292O60281 2723 aa13.13□□□□□ -0.31
CCDC88B-202ENST00000356786 WDFY4Q6ZS81 3184 aa13.13□□□□□ -0.31
CCDC88B-202ENST00000356786 C7orf65Q6ZTY9 151 aa13.12□□□□□ -0.31
CCDC88B-202ENST00000356786 CFAP54Q96N23 3096 aa13.12□□□□□ -0.31
CCDC88B-202ENST00000356786 MGAQ8IWI9 3026 aa13.11□□□□□ -0.31
CCDC88B-202ENST00000356786 H3BNG1 76 aa13.1□□□□□ -0.31
CCDC88B-202ENST00000356786 LINC00528Q8N1L1 170 aa13.1□□□□□ -0.31
CCDC88B-202ENST00000356786 FLNBO75369 2602 aaKnown RBP13.1□□□□□ -0.31
CCDC88B-202ENST00000356786 C8orf87E5RJ46 101 aa13.1□□□□□ -0.31
CCDC88B-202ENST00000356786 SZT2Q5T011 3432 aa13.09□□□□□ -0.31
CCDC88B-202ENST00000356786 EPM2AB3EWF7 344 aa13.08□□□□□ -0.32
CCDC88B-202ENST00000356786 PHF5AQ7RTV0 110 aaKnown RBP13.08□□□□□ -0.32
CCDC88B-202ENST00000356786 CYP4F30PQ9H0H9 118 aa13.08□□□□□ -0.32
CCDC88B-202ENST00000356786 COA5Q86WW8 74 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms