RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 A0A1B0GX51 115 aa12.89□□□□□ -0.35
HOXC4-201ENST00000303406 HIGD2BQ4VC39 106 aa12.89□□□□□ -0.35
HOXC4-201ENST00000303406 RMI2Q96E14 147 aa12.89□□□□□ -0.35
HOXC4-201ENST00000303406 NOTCH1P46531 2555 aa12.89□□□□□ -0.35
HOXC4-201ENST00000303406 Q6ZRU5 148 aa12.86□□□□□ -0.35
HOXC4-201ENST00000303406 Q8NDZ9 215 aa12.86□□□□□ -0.35
HOXC4-201ENST00000303406 TEX49A0A1B0GTD5 131 aa12.85□□□□□ -0.35
HOXC4-201ENST00000303406 BAALC-AS2P0C853 105 aa12.85□□□□□ -0.35
HOXC4-201ENST00000303406 PRR3P79522 188 aaKnown RBP12.85□□□□□ -0.35
HOXC4-201ENST00000303406 DNAL4O96015 105 aa12.84□□□□□ -0.35
HOXC4-201ENST00000303406 NBEAL1Q6ZS30 2694 aa12.84□□□□□ -0.35
HOXC4-201ENST00000303406 A0A087WYN8 130 aa12.83□□□□□ -0.35
HOXC4-201ENST00000303406 NDUFC2-KCTD14E9PQ53 114 aa12.83□□□□□ -0.35
HOXC4-201ENST00000303406 NCR3O14931 201 aa12.83□□□□□ -0.35
HOXC4-201ENST00000303406 IGLV6-57P01721 117 aa12.83□□□□□ -0.35
HOXC4-201ENST00000303406 S100A7L2Q5SY68 101 aa12.83□□□□□ -0.35
HOXC4-201ENST00000303406 Q9HAA7 133 aa12.83□□□□□ -0.35
HOXC4-201ENST00000303406 NHLRC4P0CG21 123 aaPredicted RBP12.82□□□□□ -0.36
HOXC4-201ENST00000303406 SYCNQ0VAF6 134 aa12.82□□□□□ -0.36
HOXC4-201ENST00000303406 LINC00167Q96N53 147 aa12.82□□□□□ -0.36
HOXC4-201ENST00000303406 SIGMAR1Q99720 223 aa12.82□□□□□ -0.36
HOXC4-201ENST00000303406 CDIP1Q9H305 208 aa12.82□□□□□ -0.36
HOXC4-201ENST00000303406 DNAH9Q9NYC9 4486 aa12.81□□□□□ -0.36
HOXC4-201ENST00000303406 LECT2O14960 151 aa12.79□□□□□ -0.36
HOXC4-201ENST00000303406 FAM240AA0A1B0GVK7 77 aa12.78□□□□□ -0.36
HOXC4-201ENST00000303406 TLX1NBP0CAT3 122 aa12.78□□□□□ -0.36
HOXC4-201ENST00000303406 C22orf24Q9Y442 160 aa12.78□□□□□ -0.36
HOXC4-201ENST00000303406 VPREB1P12018 145 aa12.78□□□□□ -0.36
HOXC4-201ENST00000303406 XAGE1AQ9HD64 81 aa12.78□□□□□ -0.36
HOXC4-201ENST00000303406 APLNQ9ULZ1 77 aa12.78□□□□□ -0.36
HOXC4-201ENST00000303406 MGAM2Q2M2H8 2515 aa12.77□□□□□ -0.36
HOXC4-201ENST00000303406 SNCGO76070 127 aa12.77□□□□□ -0.37
HOXC4-201ENST00000303406 RPL18AQ02543 176 aaKnown RBP12.77□□□□□ -0.37
HOXC4-201ENST00000303406 C6orf99Q4VX62 202 aa12.76□□□□□ -0.37
HOXC4-201ENST00000303406 USP17L23D6RBM5 183 aa12.75□□□□□ -0.37
HOXC4-201ENST00000303406 Q8N814 137 aa12.75□□□□□ -0.37
HOXC4-201ENST00000303406 DNAH1Q9P2D7 4330 aa12.75□□□□□ -0.37
HOXC4-201ENST00000303406 M0R378 163 aa12.74□□□□□ -0.37
HOXC4-201ENST00000303406 INAFM2P0DMQ5 153 aa12.74□□□□□ -0.37
HOXC4-201ENST00000303406 ORMDL1Q9P0S3 153 aa12.74□□□□□ -0.37
HOXC4-201ENST00000303406 SCGB1A1P11684 91 aa12.73□□□□□ -0.37
HOXC4-201ENST00000303406 DYNC2H1Q8NCM8 4307 aaKnown RBP12.73□□□□□ -0.37
HOXC4-201ENST00000303406 TRBV7-6A0A0J9YX20 115 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 Q6ZRP5 223 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 TRAV23DV6A0A075B6W5 121 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 TRBV10-3A0A0K0K1G6 114 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 ACYP1P07311 99 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 PCP4P48539 62 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 LINC00575Q6W349 94 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 OBSCN-AS1Q96MR7 158 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 PLA2G2DQ9UNK4 145 aa12.72□□□□□ -0.37
HOXC4-201ENST00000303406 NUPR2A6NF83 97 aa12.7□□□□□ -0.38
HOXC4-201ENST00000303406 DIRC1Q969H9 104 aa12.7□□□□□ -0.38
HOXC4-201ENST00000303406 GAGE2EQ4V326 116 aa12.69□□□□□ -0.38
HOXC4-201ENST00000303406 CASC10Q5T4H9 136 aa12.69□□□□□ -0.38
HOXC4-201ENST00000303406 GAGE2DQ9UEU5 116 aa12.69□□□□□ -0.38
HOXC4-201ENST00000303406 UBE2DNLQ8IWF7 75 aa12.68□□□□□ -0.38
HOXC4-201ENST00000303406 H3BQ85 93 aa12.67□□□□□ -0.38
HOXC4-201ENST00000303406 C9orf129Q5T035 196 aaKnown RBP12.67□□□□□ -0.38
HOXC4-201ENST00000303406 TMEM256-PLSCR3K7ERE1 68 aa12.67□□□□□ -0.38
HOXC4-201ENST00000303406 SLPIP03973 132 aa12.67□□□□□ -0.38
HOXC4-201ENST00000303406 XGP55808 180 aa12.67□□□□□ -0.38
HOXC4-201ENST00000303406 hADV29S1A0JD25 119 aa12.66□□□□□ -0.38
HOXC4-201ENST00000303406 ZNF73O43830 326 aaPredicted RBP12.66□□□□□ -0.38
HOXC4-201ENST00000303406 IGLV5-37A0A075B6J1 123 aa12.65□□□□□ -0.38
HOXC4-201ENST00000303406 KRTAP1-5Q9BYS1 174 aa12.63□□□□□ -0.39
HOXC4-201ENST00000303406 JMJD7-PLA2G4BH0Y9G9 81 aa12.62□□□□□ -0.39
HOXC4-201ENST00000303406 MT-ATP8P03928 68 aa12.62□□□□□ -0.39
HOXC4-201ENST00000303406 COX7BP24311 80 aa12.62□□□□□ -0.39
HOXC4-201ENST00000303406 ELOF1P60002 83 aaKnown RBP12.62□□□□□ -0.39
HOXC4-201ENST00000303406 NKAPP1Q8N9T2 125 aa12.61□□□□□ -0.39
HOXC4-201ENST00000303406 LOC107984640A0A0U1RRK4 108 aa12.6□□□□□ -0.39
HOXC4-201ENST00000303406 GHRHP01286 108 aa12.6□□□□□ -0.39
HOXC4-201ENST00000303406 TTC32Q5I0X7 151 aa12.6□□□□□ -0.39
HOXC4-201ENST00000303406 CNBPP62633 177 aaKnown RBP12.58□□□□□ -0.4
HOXC4-201ENST00000303406 C14orf177Q52M58 125 aa12.58□□□□□ -0.4
HOXC4-201ENST00000303406 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.58□□□□□ -0.4
HOXC4-201ENST00000303406 KCNQ1DNQ9H478 68 aa12.58□□□□□ -0.4
HOXC4-201ENST00000303406 SERTAD4-AS1Q5TG53 156 aa12.57□□□□□ -0.4
HOXC4-201ENST00000303406 SDIM1Q6ZPB5 146 aa12.57□□□□□ -0.4
HOXC4-201ENST00000303406 C7orf33Q8WU49 177 aa12.56□□□□□ -0.4
HOXC4-201ENST00000303406 STAB2Q8WWQ8 2551 aa12.55□□□□□ -0.4
HOXC4-201ENST00000303406 PSCAO43653 123 aa12.55□□□□□ -0.4
HOXC4-201ENST00000303406 LINC00528Q8N1L1 170 aa12.55□□□□□ -0.4
HOXC4-201ENST00000303406 C14orf132Q9NPU4 83 aa12.55□□□□□ -0.4
HOXC4-201ENST00000303406 Q6Q795 121 aa12.54□□□□□ -0.4
HOXC4-201ENST00000303406 NBDYA0A0U1RRE5 68 aa12.53□□□□□ -0.4
HOXC4-201ENST00000303406 GAGE2AQ6NT46 116 aa12.53□□□□□ -0.4
HOXC4-201ENST00000303406 PRYO14603 147 aa12.52□□□□□ -0.4
HOXC4-201ENST00000303406 GAGE2BQ13066 116 aa12.52□□□□□ -0.4
HOXC4-201ENST00000303406 Q6ZQY7 126 aa12.52□□□□□ -0.4
HOXC4-201ENST00000303406 COL7A1Q02388 2944 aa12.52□□□□□ -0.41
HOXC4-201ENST00000303406 LINC00643Q86TS7 51 aa12.51□□□□□ -0.41
HOXC4-201ENST00000303406 CCKP06307 115 aa12.5□□□□□ -0.41
HOXC4-201ENST00000303406 KRTAP21-3Q3LHN1 58 aa12.5□□□□□ -0.41
HOXC4-201ENST00000303406 PKIGQ9Y2B9 76 aa12.49□□□□□ -0.41
HOXC4-201ENST00000303406 IGLV1-50A0A075B6I6 118 aa12.48□□□□□ -0.41
HOXC4-201ENST00000303406 SPRR1AP35321 89 aa12.48□□□□□ -0.41
HOXC4-201ENST00000303406 TRBV7-7A0A0K0K1E9 115 aa12.47□□□□□ -0.41
HOXC4-201ENST00000303406 C16orf90A8MZG2 172 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms