RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 A0A0J9YWU9 116 aa12.33□□□□□ -0.44
SHKBP1-201ENST00000291842 HIGD2BQ4VC39 106 aa12.33□□□□□ -0.44
SHKBP1-201ENST00000291842 C6orf99Q4VX62 202 aa12.33□□□□□ -0.44
SHKBP1-201ENST00000291842 ORMDL1Q9P0S3 153 aa12.33□□□□□ -0.44
SHKBP1-201ENST00000291842 NOTCH1P46531 2555 aa12.31□□□□□ -0.44
SHKBP1-201ENST00000291842 Q8N814 137 aa12.31□□□□□ -0.44
SHKBP1-201ENST00000291842 XAGE1AQ9HD64 81 aa12.31□□□□□ -0.44
SHKBP1-201ENST00000291842 C6orf48Q9UBA6 75 aa12.31□□□□□ -0.44
SHKBP1-201ENST00000291842 RPL18AQ02543 176 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-201ENST00000291842 EGFEM1PQ0D2K5 195 aa12.3□□□□□ -0.44
SHKBP1-201ENST00000291842 ESRGQ1W209 222 aa12.3□□□□□ -0.44
SHKBP1-201ENST00000291842 CMYA5Q8N3K9 4069 aa12.29□□□□□ -0.44
SHKBP1-201ENST00000291842 OBSCN-AS1Q96MR7 158 aa12.28□□□□□ -0.44
SHKBP1-201ENST00000291842 TRBV7-7A0A0K0K1E9 115 aa12.27□□□□□ -0.44
SHKBP1-201ENST00000291842 H3BNG1 76 aa12.27□□□□□ -0.44
SHKBP1-201ENST00000291842 LINC00643Q86TS7 51 aa12.27□□□□□ -0.45
SHKBP1-201ENST00000291842 ZNF561-AS1K7EIQ3 104 aa12.26□□□□□ -0.45
SHKBP1-201ENST00000291842 DEFB131BA0A096LNP1 70 aa12.26□□□□□ -0.45
SHKBP1-201ENST00000291842 PRB2P02812 416 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-201ENST00000291842 SDIM1Q6ZPB5 146 aa12.26□□□□□ -0.45
SHKBP1-201ENST00000291842 KRTAP26-1Q6PEX3 210 aa12.25□□□□□ -0.45
SHKBP1-201ENST00000291842 LINC00167Q96N53 147 aa12.25□□□□□ -0.45
SHKBP1-201ENST00000291842 C11orf45Q8TAV5 145 aa12.25□□□□□ -0.45
SHKBP1-201ENST00000291842 CAMK2N2Q96S95 79 aa12.25□□□□□ -0.45
SHKBP1-201ENST00000291842 GVQW2A0A096LPI5 108 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-201ENST00000291842 A0A1B0GX51 115 aa12.22□□□□□ -0.45
SHKBP1-201ENST00000291842 IGLV6-57P01721 117 aa12.22□□□□□ -0.45
SHKBP1-201ENST00000291842 LINC00575Q6W349 94 aa12.22□□□□□ -0.45
SHKBP1-201ENST00000291842 LINC00846Q9NV44 126 aa12.22□□□□□ -0.45
SHKBP1-201ENST00000291842 TRBV10-3A0A0K0K1G6 114 aa12.21□□□□□ -0.45
SHKBP1-201ENST00000291842 Q6ZRU5 148 aa12.21□□□□□ -0.45
SHKBP1-201ENST00000291842 MUC7Q8TAX7 377 aa12.21□□□□□ -0.45
SHKBP1-201ENST00000291842 COL6A5A8TX70 2615 aa12.21□□□□□ -0.45
SHKBP1-201ENST00000291842 FAM236AA0A1B0GUQ0 79 aa12.21□□□□□ -0.46
SHKBP1-201ENST00000291842 FAM236BA0A1B0GV22 79 aa12.21□□□□□ -0.46
SHKBP1-201ENST00000291842 CCDC179H3BU77 68 aa12.21□□□□□ -0.46
SHKBP1-201ENST00000291842 C15orf56Q8N910 161 aa12.21□□□□□ -0.46
SHKBP1-201ENST00000291842 TMEM256-PLSCR3K7ERE1 68 aa12.2□□□□□ -0.46
SHKBP1-201ENST00000291842 IGKV2D-24A0A075B6R9 120 aa12.19□□□□□ -0.46
SHKBP1-201ENST00000291842 C1orf43Q9BWL3 253 aa12.19□□□□□ -0.46
SHKBP1-201ENST00000291842 hADV29S1A0JD25 119 aa12.18□□□□□ -0.46
SHKBP1-201ENST00000291842 IMUPQ9GZP8 106 aa12.18□□□□□ -0.46
SHKBP1-201ENST00000291842 NBEAL1Q6ZS30 2694 aa12.17□□□□□ -0.46
SHKBP1-201ENST00000291842 B5MCH6 92 aa12.16□□□□□ -0.46
SHKBP1-201ENST00000291842 IGKV3D-7A0A0C4DH55 119 aa12.16□□□□□ -0.46
SHKBP1-201ENST00000291842 TRAV23DV6A0A075B6W5 121 aa12.15□□□□□ -0.46
SHKBP1-201ENST00000291842 LINC01556Q5JQF7 62 aa12.15□□□□□ -0.46
SHKBP1-201ENST00000291842 JMJD7-PLA2G4BH0Y9G9 81 aa12.15□□□□□ -0.46
SHKBP1-201ENST00000291842 CCKP06307 115 aa12.15□□□□□ -0.46
SHKBP1-201ENST00000291842 MRAPQ8TCY5 172 aa12.15□□□□□ -0.46
SHKBP1-201ENST00000291842 BAHCC1Q9P281 2608 aa12.14□□□□□ -0.47
SHKBP1-201ENST00000291842 DNAH3Q8TD57 4116 aa12.13□□□□□ -0.47
SHKBP1-201ENST00000291842 VPREB1P12018 145 aa12.13□□□□□ -0.47
SHKBP1-201ENST00000291842 Q6ZQY7 126 aa12.13□□□□□ -0.47
SHKBP1-201ENST00000291842 DIRC1Q969H9 104 aa12.12□□□□□ -0.47
SHKBP1-201ENST00000291842 NDUFC2-KCTD14E9PQ53 114 aa12.11□□□□□ -0.47
SHKBP1-201ENST00000291842 ZNF73O43830 326 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-201ENST00000291842 Q6ZRP5 223 aa12.11□□□□□ -0.47
SHKBP1-201ENST00000291842 SS18L2Q9UHA2 77 aa12.11□□□□□ -0.47
SHKBP1-201ENST00000291842 LAMTOR3Q9UHA4 124 aa12.11□□□□□ -0.47
SHKBP1-201ENST00000291842 C2orf48Q96LS8 159 aa12.1□□□□□ -0.47
SHKBP1-201ENST00000291842 LINC00588Q9Y4M8 146 aa12.07□□□□□ -0.48
SHKBP1-201ENST00000291842 COX7BP24311 80 aa12.07□□□□□ -0.48
SHKBP1-201ENST00000291842 SYCNQ0VAF6 134 aa12.07□□□□□ -0.48
SHKBP1-201ENST00000291842 DNAH10OSP0CZ25 163 aa12.06□□□□□ -0.48
SHKBP1-201ENST00000291842 RBM3P98179 157 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-201ENST00000291842 Q6JHZ5 121 aa12.06□□□□□ -0.48
SHKBP1-201ENST00000291842 A0A087WVE0 104 aa12.06□□□□□ -0.48
SHKBP1-201ENST00000291842 M0R378 163 aa12.06□□□□□ -0.48
SHKBP1-201ENST00000291842 TRAV10A0A0B4J240 114 aa12.05□□□□□ -0.48
SHKBP1-201ENST00000291842 CASC10Q5T4H9 136 aa12.05□□□□□ -0.48
SHKBP1-201ENST00000291842 ELOF1P60002 83 aaKnown RBP12.04□□□□□ -0.48
SHKBP1-201ENST00000291842 K7EIL1 84 aa12.04□□□□□ -0.48
SHKBP1-201ENST00000291842 M0R2N4 97 aa12.04□□□□□ -0.48
SHKBP1-201ENST00000291842 Q6ZQT0 140 aa12.03□□□□□ -0.48
SHKBP1-201ENST00000291842 TM2D3Q9BRN9 247 aa12.01□□□□□ -0.49
SHKBP1-201ENST00000291842 MGAM2Q2M2H8 2515 aa12.01□□□□□ -0.49
SHKBP1-201ENST00000291842 HIST1H4AP62805 103 aaKnown RBP12□□□□□ -0.49
SHKBP1-201ENST00000291842 SERTAD4-AS1Q5TG53 156 aa12□□□□□ -0.49
SHKBP1-201ENST00000291842 HUWE1Q7Z6Z7 4374 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-201ENST00000291842 DSCR8Q96T75 97 aa11.98□□□□□ -0.49
SHKBP1-201ENST00000291842 USP17L23D6RBM5 183 aa11.98□□□□□ -0.49
SHKBP1-201ENST00000291842 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-201ENST00000291842 LOC110117498A0A087WWA1 95 aa11.97□□□□□ -0.49
SHKBP1-201ENST00000291842 LINC00528Q8N1L1 170 aa11.97□□□□□ -0.49
SHKBP1-201ENST00000291842 NKAPP1Q8N9T2 125 aa11.97□□□□□ -0.49
SHKBP1-201ENST00000291842 UBL5Q9BZL1 73 aa11.97□□□□□ -0.49
SHKBP1-201ENST00000291842 TRBV7-6A0A0J9YX20 115 aa11.96□□□□□ -0.5
SHKBP1-201ENST00000291842 FAM168BA1KXE4 195 aa11.95□□□□□ -0.5
SHKBP1-201ENST00000291842 F8WDY8 70 aa11.94□□□□□ -0.5
SHKBP1-201ENST00000291842 C7orf33Q8WU49 177 aa11.94□□□□□ -0.5
SHKBP1-201ENST00000291842 FAM19A1Q7Z5A9 133 aa11.94□□□□□ -0.5
SHKBP1-201ENST00000291842 C3orf22Q8N5N4 141 aa11.93□□□□□ -0.5
SHKBP1-201ENST00000291842 RPL37AP8A6NKH3 93 aa11.93□□□□□ -0.5
SHKBP1-201ENST00000291842 COL7A1Q02388 2944 aa11.92□□□□□ -0.5
SHKBP1-201ENST00000291842 ATOX1O00244 68 aa11.92□□□□□ -0.5
SHKBP1-201ENST00000291842 C9orf153Q5TBE3 101 aa11.91□□□□□ -0.5
SHKBP1-201ENST00000291842 LYSTQ99698 3801 aa11.91□□□□□ -0.5
SHKBP1-201ENST00000291842 H3BQ85 93 aa11.91□□□□□ -0.5
SHKBP1-201ENST00000291842 UQCRQO14949 82 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms