RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 A0A0J9YWU9 116 aa13.48□□□□□ -0.25
VPS53-201ENST00000291074 Q6Q795 121 aa13.48□□□□□ -0.25
VPS53-201ENST00000291074 TMEM126AQ9H061 195 aa13.48□□□□□ -0.25
VPS53-201ENST00000291074 GAGE2AQ6NT46 116 aa13.47□□□□□ -0.25
VPS53-201ENST00000291074 INAFM2P0DMQ5 153 aa13.47□□□□□ -0.25
VPS53-201ENST00000291074 C14orf132Q9NPU4 83 aa13.47□□□□□ -0.25
VPS53-201ENST00000291074 ACYP1P07311 99 aa13.46□□□□□ -0.25
VPS53-201ENST00000291074 H3BNG1 76 aa13.46□□□□□ -0.26
VPS53-201ENST00000291074 C6orf48Q9UBA6 75 aa13.46□□□□□ -0.26
VPS53-201ENST00000291074 ESRGQ1W209 222 aa13.45□□□□□ -0.26
VPS53-201ENST00000291074 HIGD2BQ4VC39 106 aa13.45□□□□□ -0.26
VPS53-201ENST00000291074 C6orf99Q4VX62 202 aa13.44□□□□□ -0.26
VPS53-201ENST00000291074 S100A7L2Q5SY68 101 aa13.44□□□□□ -0.26
VPS53-201ENST00000291074 ORMDL1Q9P0S3 153 aa13.43□□□□□ -0.26
VPS53-201ENST00000291074 XAGE1AQ9HD64 81 aa13.42□□□□□ -0.26
VPS53-201ENST00000291074 RPL18AQ02543 176 aaKnown RBP13.42□□□□□ -0.26
VPS53-201ENST00000291074 KRTAP26-1Q6PEX3 210 aa13.42□□□□□ -0.26
VPS53-201ENST00000291074 Q8N814 137 aa13.42□□□□□ -0.26
VPS53-201ENST00000291074 COL6A5A8TX70 2615 aa13.41□□□□□ -0.26
VPS53-201ENST00000291074 DNAH3Q8TD57 4116 aa13.41□□□□□ -0.26
VPS53-201ENST00000291074 DEFB131BA0A096LNP1 70 aa13.41□□□□□ -0.26
VPS53-201ENST00000291074 OBSCN-AS1Q96MR7 158 aa13.4□□□□□ -0.26
VPS53-201ENST00000291074 PRB2P02812 416 aaPredicted RBP13.39□□□□□ -0.27
VPS53-201ENST00000291074 C11orf45Q8TAV5 145 aa13.39□□□□□ -0.27
VPS53-201ENST00000291074 LINC00167Q96N53 147 aa13.39□□□□□ -0.27
VPS53-201ENST00000291074 GVQW2A0A096LPI5 108 aaPredicted RBP13.39□□□□□ -0.27
VPS53-201ENST00000291074 BAHCC1Q9P281 2608 aa13.39□□□□□ -0.27
VPS53-201ENST00000291074 NBEAL1Q6ZS30 2694 aa13.38□□□□□ -0.27
VPS53-201ENST00000291074 TRBV7-7A0A0K0K1E9 115 aa13.38□□□□□ -0.27
VPS53-201ENST00000291074 ZNF561-AS1K7EIQ3 104 aa13.37□□□□□ -0.27
VPS53-201ENST00000291074 FAM236AA0A1B0GUQ0 79 aa13.37□□□□□ -0.27
VPS53-201ENST00000291074 FAM236BA0A1B0GV22 79 aa13.37□□□□□ -0.27
VPS53-201ENST00000291074 SDIM1Q6ZPB5 146 aa13.37□□□□□ -0.27
VPS53-201ENST00000291074 CAMK2N2Q96S95 79 aa13.37□□□□□ -0.27
VPS53-201ENST00000291074 MUC7Q8TAX7 377 aa13.36□□□□□ -0.27
VPS53-201ENST00000291074 LINC00643Q86TS7 51 aa13.36□□□□□ -0.27
VPS53-201ENST00000291074 C15orf56Q8N910 161 aa13.36□□□□□ -0.27
VPS53-201ENST00000291074 A0A1B0GX51 115 aa13.35□□□□□ -0.27
VPS53-201ENST00000291074 IGLV6-57P01721 117 aa13.35□□□□□ -0.27
VPS53-201ENST00000291074 Q6ZRU5 148 aa13.34□□□□□ -0.27
VPS53-201ENST00000291074 TRBV10-3A0A0K0K1G6 114 aa13.33□□□□□ -0.28
VPS53-201ENST00000291074 LINC00575Q6W349 94 aa13.33□□□□□ -0.28
VPS53-201ENST00000291074 LOC107984640A0A0U1RRK4 108 aa13.32□□□□□ -0.28
VPS53-201ENST00000291074 IGKV2D-24A0A075B6R9 120 aa13.32□□□□□ -0.28
VPS53-201ENST00000291074 C1orf43Q9BWL3 253 aa13.32□□□□□ -0.28
VPS53-201ENST00000291074 LINC01556Q5JQF7 62 aa13.31□□□□□ -0.28
VPS53-201ENST00000291074 LINC00846Q9NV44 126 aa13.3□□□□□ -0.28
VPS53-201ENST00000291074 TMEM256-PLSCR3K7ERE1 68 aa13.29□□□□□ -0.28
VPS53-201ENST00000291074 hADV29S1A0JD25 119 aa13.27□□□□□ -0.28
VPS53-201ENST00000291074 TRAV23DV6A0A075B6W5 121 aa13.26□□□□□ -0.29
VPS53-201ENST00000291074 C9orf153Q5TBE3 101 aa13.26□□□□□ -0.29
VPS53-201ENST00000291074 MRAPQ8TCY5 172 aa13.26□□□□□ -0.29
VPS53-201ENST00000291074 VPREB1P12018 145 aa13.26□□□□□ -0.29
VPS53-201ENST00000291074 IMUPQ9GZP8 106 aa13.26□□□□□ -0.29
VPS53-201ENST00000291074 CCKP06307 115 aa13.24□□□□□ -0.29
VPS53-201ENST00000291074 JMJD7-PLA2G4BH0Y9G9 81 aa13.24□□□□□ -0.29
VPS53-201ENST00000291074 C2orf48Q96LS8 159 aa13.24□□□□□ -0.29
VPS53-201ENST00000291074 NDUFC2-KCTD14E9PQ53 114 aa13.23□□□□□ -0.29
VPS53-201ENST00000291074 DIRC1Q969H9 104 aa13.23□□□□□ -0.29
VPS53-201ENST00000291074 HUWE1Q7Z6Z7 4374 aaKnown RBP13.23□□□□□ -0.29
VPS53-201ENST00000291074 DNAH10OSP0CZ25 163 aa13.22□□□□□ -0.29
VPS53-201ENST00000291074 Q6ZQY7 126 aa13.22□□□□□ -0.29
VPS53-201ENST00000291074 Q6ZRP5 223 aa13.22□□□□□ -0.29
VPS53-201ENST00000291074 IGKV3D-7A0A0C4DH55 119 aa13.22□□□□□ -0.29
VPS53-201ENST00000291074 ZNF73O43830 326 aaPredicted RBP13.21□□□□□ -0.29
VPS53-201ENST00000291074 TRAV10A0A0B4J240 114 aa13.21□□□□□ -0.3
VPS53-201ENST00000291074 C3orf22Q8N5N4 141 aa13.21□□□□□ -0.3
VPS53-201ENST00000291074 LINC00588Q9Y4M8 146 aa13.21□□□□□ -0.3
VPS53-201ENST00000291074 K7EIL1 84 aa13.2□□□□□ -0.3
VPS53-201ENST00000291074 MGAM2Q2M2H8 2515 aa13.2□□□□□ -0.3
VPS53-201ENST00000291074 SYCNQ0VAF6 134 aa13.19□□□□□ -0.3
VPS53-201ENST00000291074 TM2D3Q9BRN9 247 aa13.18□□□□□ -0.3
VPS53-201ENST00000291074 CASC10Q5T4H9 136 aa13.17□□□□□ -0.3
VPS53-201ENST00000291074 M0R378 163 aa13.17□□□□□ -0.3
VPS53-201ENST00000291074 LAMTOR3Q9UHA4 124 aa13.17□□□□□ -0.3
VPS53-201ENST00000291074 COX7BP24311 80 aa13.16□□□□□ -0.3
VPS53-201ENST00000291074 Q6JHZ5 121 aa13.16□□□□□ -0.3
VPS53-201ENST00000291074 CYSTM1Q9H1C7 97 aa13.16□□□□□ -0.3
VPS53-201ENST00000291074 ELOF1P60002 83 aaKnown RBP13.15□□□□□ -0.3
VPS53-201ENST00000291074 UQCRQO14949 82 aa13.14□□□□□ -0.31
VPS53-201ENST00000291074 RBM3P98179 157 aaKnown RBP13.14□□□□□ -0.31
VPS53-201ENST00000291074 FAM19A5Q7Z5A7 132 aaPredicted RBP13.13□□□□□ -0.31
VPS53-201ENST00000291074 M0R2N4 97 aa13.12□□□□□ -0.31
VPS53-201ENST00000291074 DNAH1Q9P2D7 4330 aa13.12□□□□□ -0.31
VPS53-201ENST00000291074 A0A087WVE0 104 aa13.11□□□□□ -0.31
VPS53-201ENST00000291074 SERTAD4-AS1Q5TG53 156 aa13.11□□□□□ -0.31
VPS53-201ENST00000291074 Q6ZQT0 140 aa13.11□□□□□ -0.31
VPS53-201ENST00000291074 USP17L23D6RBM5 183 aa13.1□□□□□ -0.31
VPS53-201ENST00000291074 COL7A1Q02388 2944 aa13.09□□□□□ -0.31
VPS53-201ENST00000291074 STAB2Q8WWQ8 2551 aa13.09□□□□□ -0.31
VPS53-201ENST00000291074 F8WDY8 70 aa13.08□□□□□ -0.31
VPS53-201ENST00000291074 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.08□□□□□ -0.32
VPS53-201ENST00000291074 TRBV7-6A0A0J9YX20 115 aa13.07□□□□□ -0.32
VPS53-201ENST00000291074 LINC00528Q8N1L1 170 aa13.07□□□□□ -0.32
VPS53-201ENST00000291074 COX7CP15954 63 aa13.07□□□□□ -0.32
VPS53-201ENST00000291074 LOC110117498A0A087WWA1 95 aa13.06□□□□□ -0.32
VPS53-201ENST00000291074 HIST1H4AP62805 103 aaKnown RBP13.06□□□□□ -0.32
VPS53-201ENST00000291074 NKAPP1Q8N9T2 125 aa13.06□□□□□ -0.32
VPS53-201ENST00000291074 J3KT08 172 aa13.06□□□□□ -0.32
VPS53-201ENST00000291074 C7orf33Q8WU49 177 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms