RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 RYR3Q15413 4870 aa7.99□□□□□ -1.13
LINC00339-213ENST00000642137 PYY3Q5JQD4 70 aa7.99□□□□□ -1.13
LINC00339-213ENST00000642137 SFTA2Q6UW10 78 aa7.99□□□□□ -1.13
LINC00339-213ENST00000642137 C2orf82Q6UX34 121 aa7.99□□□□□ -1.13
LINC00339-213ENST00000642137 Q6ZRU5 148 aa7.99□□□□□ -1.13
LINC00339-213ENST00000642137 CARD19Q96LW7 228 aa7.99□□□□□ -1.13
LINC00339-213ENST00000642137 IGLV5-52A0A0A0MRZ9 124 aa7.98□□□□□ -1.13
LINC00339-213ENST00000642137 LOC105371267A0A1B0GV96 52 aa7.98□□□□□ -1.13
LINC00339-213ENST00000642137 HSBP1L1C9JCN9 74 aa7.98□□□□□ -1.13
LINC00339-213ENST00000642137 NMUP48645 174 aa7.98□□□□□ -1.13
LINC00339-213ENST00000642137 ANKRD39Q53RE8 183 aa7.98□□□□□ -1.13
LINC00339-213ENST00000642137 C10orf25Q5T742 122 aa7.98□□□□□ -1.13
LINC00339-213ENST00000642137 FAT2Q9NYQ8 4349 aa7.97□□□□□ -1.13
LINC00339-213ENST00000642137 LGALS3P17931 250 aaKnown RBP7.97□□□□□ -1.13
LINC00339-213ENST00000642137 ZNF625Q96I27 306 aaPredicted RBP7.97□□□□□ -1.13
LINC00339-213ENST00000642137 C6orf48Q9UBA6 75 aa7.97□□□□□ -1.13
LINC00339-213ENST00000642137 IGKV2D-26A0A0A0MRZ7 120 aa7.96□□□□□ -1.14
LINC00339-213ENST00000642137 MYMXA0A1B0GTQ4 84 aa7.96□□□□□ -1.14
LINC00339-213ENST00000642137 TSPEAR-AS2P59090 65 aa7.96□□□□□ -1.14
LINC00339-213ENST00000642137 MAJINQ3KP22 176 aa7.96□□□□□ -1.14
LINC00339-213ENST00000642137 NDUFA12Q9UI09 145 aa7.96□□□□□ -1.14
LINC00339-213ENST00000642137 GCSHP23434 173 aa7.95□□□□□ -1.14
LINC00339-213ENST00000642137 FUSP35637 526 aaKnown RBP eCLIP7.95□□□□□ -1.14
LINC00339-213ENST00000642137 HERV-K104P63124 156 aa7.95□□□□□ -1.14
LINC00339-213ENST00000642137 PKIGQ9Y2B9 76 aa7.95□□□□□ -1.14
LINC00339-213ENST00000642137 DNAH11Q96DT5 4516 aa7.94□□□□□ -1.14
LINC00339-213ENST00000642137 LINC00587B1AMM8 73 aa7.94□□□□□ -1.14
LINC00339-213ENST00000642137 TLX1NBP0CAT3 122 aa7.94□□□□□ -1.14
LINC00339-213ENST00000642137 SDIM1Q6ZPB5 146 aa7.94□□□□□ -1.14
LINC00339-213ENST00000642137 LOC107984640A0A0U1RRK4 108 aa7.93□□□□□ -1.14
LINC00339-213ENST00000642137 COX17Q14061 63 aa7.93□□□□□ -1.14
LINC00339-213ENST00000642137 C9orf116Q5BN46 136 aaPredicted RBP7.93□□□□□ -1.14
LINC00339-213ENST00000642137 VAMP8Q9BV40 100 aa7.93□□□□□ -1.14
LINC00339-213ENST00000642137 PKD1P98161 4303 aa7.92□□□□□ -1.14
LINC00339-213ENST00000642137 ZNF815PA8K554 130 aa7.91□□□□□ -1.14
LINC00339-213ENST00000642137 NDUFC2-KCTD14E9PQ53 114 aa7.91□□□□□ -1.14
LINC00339-213ENST00000642137 LINC01620Q4KN68 170 aa7.91□□□□□ -1.14
LINC00339-213ENST00000642137 SPATA45Q537H7 98 aa7.91□□□□□ -1.14
LINC00339-213ENST00000642137 ERG28Q9UKR5 140 aa7.91□□□□□ -1.14
LINC00339-213ENST00000642137 PAM16Q9Y3D7 125 aa7.91□□□□□ -1.14
LINC00339-213ENST00000642137 A0A0J9YXY3 114 aa7.9□□□□□ -1.14
LINC00339-213ENST00000642137 C16orf90A8MZG2 172 aa7.9□□□□□ -1.14
LINC00339-213ENST00000642137 S100A12P80511 92 aa7.9□□□□□ -1.14
LINC00339-213ENST00000642137 PCP2Q8IVA1 136 aa7.9□□□□□ -1.14
LINC00339-213ENST00000642137 TTTY13Q9BZ97 58 aa7.9□□□□□ -1.14
LINC00339-213ENST00000642137 SMIM6P0DI80 62 aa7.89□□□□□ -1.15
LINC00339-213ENST00000642137 COX8AP10176 69 aa7.89□□□□□ -1.15
LINC00339-213ENST00000642137 PFN2P35080 140 aa7.89□□□□□ -1.15
LINC00339-213ENST00000642137 KRTAP10-1P60331 282 aa7.89□□□□□ -1.15
LINC00339-213ENST00000642137 CIRBPQ14011 172 aaKnown RBP7.89□□□□□ -1.15
LINC00339-213ENST00000642137 MEIG1Q5JSS6 88 aa7.89□□□□□ -1.15
LINC00339-213ENST00000642137 Q6ZRP5 223 aa7.89□□□□□ -1.15
LINC00339-213ENST00000642137 HECTD4Q9Y4D8 3996 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 DLEU1O43261 78 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 SMIM13P0DJ93 91 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 PTTG1IPP53801 180 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 LINC00158P58513 81 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 RPL18AQ02543 176 aaKnown RBP7.88□□□□□ -1.15
LINC00339-213ENST00000642137 GAGE2BQ13066 116 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 BOD1L2Q8IYS8 172 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 LINC00474Q9P2X8 69 aa7.88□□□□□ -1.15
LINC00339-213ENST00000642137 DNAH5Q8TE73 4624 aa7.87□□□□□ -1.15
LINC00339-213ENST00000642137 A0A096LNI7 61 aa7.87□□□□□ -1.15
LINC00339-213ENST00000642137 TIMM17BO60830 172 aa7.87□□□□□ -1.15
LINC00339-213ENST00000642137 GAGE2EQ4V326 116 aa7.87□□□□□ -1.15
LINC00339-213ENST00000642137 GAGE2DQ9UEU5 116 aa7.87□□□□□ -1.15
LINC00339-213ENST00000642137 SCGB1D4Q6XE38 83 aa7.86□□□□□ -1.15
LINC00339-213ENST00000642137 C14orf144Q96I85 54 aa7.86□□□□□ -1.15
LINC00339-213ENST00000642137 A0A0U1RRA0 63 aa7.85□□□□□ -1.15
LINC00339-213ENST00000642137 Q6ZSA8 131 aa7.85□□□□□ -1.15
LINC00339-213ENST00000642137 IGKV2-24A0A0C4DH68 120 aa7.84□□□□□ -1.15
LINC00339-213ENST00000642137 SLC25A34Q6PIV7 304 aa7.84□□□□□ -1.15
LINC00339-213ENST00000642137 MIR7-3HGQ8N6C7 128 aa7.84□□□□□ -1.15
LINC00339-213ENST00000642137 DPH3Q96FX2 82 aa7.84□□□□□ -1.15
LINC00339-213ENST00000642137 LITAFQ99732 161 aa7.84□□□□□ -1.15
LINC00339-213ENST00000642137 SND1-IT1Q9HBX3 110 aa7.84□□□□□ -1.15
LINC00339-213ENST00000642137 FAM30AQ9NZY2 134 aa7.84□□□□□ -1.15
LINC00339-213ENST00000642137 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.84□□□□□ -1.15
LINC00339-213ENST00000642137 LOC107984156A0A0G2JMH3 177 aa7.83□□□□□ -1.16
LINC00339-213ENST00000642137 TMEM238C9JI98 176 aa7.83□□□□□ -1.16
LINC00339-213ENST00000642137 PANO1I0J062 215 aa7.83□□□□□ -1.16
LINC00339-213ENST00000642137 CHTF8P0CG12 524 aa7.83□□□□□ -1.16
LINC00339-213ENST00000642137 C9orf129Q5T035 196 aaKnown RBP7.83□□□□□ -1.16
LINC00339-213ENST00000642137 ADAMTSL4-AS1Q5T5F5 129 aa7.83□□□□□ -1.16
LINC00339-213ENST00000642137 ARL17AQ8IVW1 177 aa7.83□□□□□ -1.16
LINC00339-213ENST00000642137 SPACA4Q8TDM5 124 aa7.83□□□□□ -1.16
LINC00339-213ENST00000642137 Q6ZVH6 145 aa7.82□□□□□ -1.16
LINC00339-213ENST00000642137 XAGE1AQ9HD64 81 aa7.82□□□□□ -1.16
LINC00339-213ENST00000642137 PLA2G2DQ9UNK4 145 aa7.82□□□□□ -1.16
LINC00339-213ENST00000642137 DNAH8Q96JB1 4490 aa7.82□□□□□ -1.16
LINC00339-213ENST00000642137 EPM2AB3EWF7 344 aa7.81□□□□□ -1.16
LINC00339-213ENST00000642137 DAND5Q8N907 189 aa7.81□□□□□ -1.16
LINC00339-213ENST00000642137 C12orf57Q99622 126 aa7.81□□□□□ -1.16
LINC00339-213ENST00000642137 SPANXDQ9BXN6 97 aa7.81□□□□□ -1.16
LINC00339-213ENST00000642137 SPANXB1Q9NS25 103 aaPredicted RBP7.81□□□□□ -1.16
LINC00339-213ENST00000642137 SPANXCQ9NY87 97 aa7.81□□□□□ -1.16
LINC00339-213ENST00000642137 HIGD1BQ9P298 99 aa7.81□□□□□ -1.16
LINC00339-213ENST00000642137 A0A087WYN8 130 aa7.8□□□□□ -1.16
LINC00339-213ENST00000642137 A0A1W2PNN7 141 aa7.8□□□□□ -1.16
LINC00339-213ENST00000642137 LINC00518Q8N0U6 118 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms