RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 PMCHL1Q16048 86 aa11.57□□□□□ -0.56
CLN3-259ENST00000637551 MAJINQ3KP22 176 aa11.57□□□□□ -0.56
CLN3-259ENST00000637551 C6orf226Q5I0X4 101 aa11.57□□□□□ -0.56
CLN3-259ENST00000637551 SFTA2Q6UW10 78 aa11.57□□□□□ -0.56
CLN3-259ENST00000637551 IFI27L1Q96BM0 104 aa11.57□□□□□ -0.56
CLN3-259ENST00000637551 IGKV2-24A0A0C4DH68 120 aa11.56□□□□□ -0.56
CLN3-259ENST00000637551 DPH3Q96FX2 82 aa11.56□□□□□ -0.56
CLN3-259ENST00000637551 C6orf48Q9UBA6 75 aa11.56□□□□□ -0.56
CLN3-259ENST00000637551 IGLV5-39A0A0G2JS06 123 aa11.55□□□□□ -0.56
CLN3-259ENST00000637551 NDUFC2-KCTD14E9PQ53 114 aa11.55□□□□□ -0.56
CLN3-259ENST00000637551 F8VRH5 84 aa11.55□□□□□ -0.56
CLN3-259ENST00000637551 S100A1P23297 94 aa11.55□□□□□ -0.56
CLN3-259ENST00000637551 UNQ6190/PRO20217Q6UXQ8 127 aa11.55□□□□□ -0.56
CLN3-259ENST00000637551 STPG4Q8N801 248 aa11.55□□□□□ -0.56
CLN3-259ENST00000637551 C7orf33Q8WU49 177 aa11.55□□□□□ -0.56
CLN3-259ENST00000637551 SERF1AO75920 110 aa11.54□□□□□ -0.56
CLN3-259ENST00000637551 C10orf25Q5T742 122 aa11.54□□□□□ -0.56
CLN3-259ENST00000637551 LINC00310P59036 64 aa11.53□□□□□ -0.56
CLN3-259ENST00000637551 LEPROTL1O95214 131 aa11.52□□□□□ -0.57
CLN3-259ENST00000637551 ZNF22P17026 224 aaPredicted RBP11.52□□□□□ -0.57
CLN3-259ENST00000637551 NDUFA6P56556 154 aa11.52□□□□□ -0.57
CLN3-259ENST00000637551 KRTAP10-4P60372 401 aaPredicted RBP11.52□□□□□ -0.57
CLN3-259ENST00000637551 RPL18AQ02543 176 aaKnown RBP11.52□□□□□ -0.57
CLN3-259ENST00000637551 COX7B2Q8TF08 81 aa11.52□□□□□ -0.57
CLN3-259ENST00000637551 TOMM7Q9P0U1 55 aa11.52□□□□□ -0.57
CLN3-259ENST00000637551 HSPB8Q9UJY1 196 aa11.52□□□□□ -0.57
CLN3-259ENST00000637551 RPL37AP61513 92 aaKnown RBP11.51□□□□□ -0.57
CLN3-259ENST00000637551 GAGE2BQ13066 116 aa11.51□□□□□ -0.57
CLN3-259ENST00000637551 C2orf82Q6UX34 121 aa11.51□□□□□ -0.57
CLN3-259ENST00000637551 CHTOPQ9Y3Y2 248 aaKnown RBP11.51□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BKO60814 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BJP06899 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BOP23527 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BBP33778 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BDP58876 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BCP62807 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST2H2BEQ16778 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.5□□□□□ -0.57
CLN3-259ENST00000637551 Q6ZRP5 223 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BHQ93079 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BNQ99877 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 HIST1H2BMQ99879 126 aa11.5□□□□□ -0.57
CLN3-259ENST00000637551 SCO1O75880 301 aa11.49□□□□□ -0.57
CLN3-259ENST00000637551 FAM19A2Q8N3H0 131 aa11.49□□□□□ -0.57
CLN3-259ENST00000637551 C11orf86A6NJI1 115 aa11.48□□□□□ -0.57
CLN3-259ENST00000637551 SPINK8P0C7L1 97 aa11.48□□□□□ -0.57
CLN3-259ENST00000637551 COA6Q5JTJ3 125 aaKnown RBP11.47□□□□□ -0.57
CLN3-259ENST00000637551 C9orf116Q5BN46 136 aaPredicted RBP11.46□□□□□ -0.57
CLN3-259ENST00000637551 HMCN2Q8NDA2 5059 aa11.46□□□□□ -0.58
CLN3-259ENST00000637551 PLNP26678 52 aa11.45□□□□□ -0.58
CLN3-259ENST00000637551 TMEM170BQ5T4T1 132 aa11.45□□□□□ -0.58
CLN3-259ENST00000637551 COX17Q14061 63 aa11.44□□□□□ -0.58
CLN3-259ENST00000637551 A0A1W2PNN7 141 aa11.42□□□□□ -0.58
CLN3-259ENST00000637551 TMEM223A0PJW6 202 aa11.42□□□□□ -0.58
CLN3-259ENST00000637551 NUPR1O60356 82 aa11.42□□□□□ -0.58
CLN3-259ENST00000637551 J3QL48 77 aa11.41□□□□□ -0.58
CLN3-259ENST00000637551 ATP6V1G1O75348 118 aa11.41□□□□□ -0.58
CLN3-259ENST00000637551 PRR3P79522 188 aaKnown RBP11.41□□□□□ -0.58
CLN3-259ENST00000637551 GAGE2EQ4V326 116 aa11.41□□□□□ -0.58
CLN3-259ENST00000637551 MAP1LC3CQ9BXW4 147 aa11.41□□□□□ -0.58
CLN3-259ENST00000637551 GAGE2DQ9UEU5 116 aa11.41□□□□□ -0.58
CLN3-259ENST00000637551 TP73-AS1Q9UF72 201 aa11.4□□□□□ -0.58
CLN3-259ENST00000637551 PLA2G2DQ9UNK4 145 aa11.4□□□□□ -0.58
CLN3-259ENST00000637551 C9orf129Q5T035 196 aaKnown RBP11.39□□□□□ -0.59
CLN3-259ENST00000637551 ZNF625Q96I27 306 aaPredicted RBP11.39□□□□□ -0.59
CLN3-259ENST00000637551 DPM2O94777 84 aa11.38□□□□□ -0.59
CLN3-259ENST00000637551 LINC00587B1AMM8 73 aa11.36□□□□□ -0.59
CLN3-259ENST00000637551 OXTP01178 125 aa11.36□□□□□ -0.59
CLN3-259ENST00000637551 FABP4P15090 132 aa11.36□□□□□ -0.59
CLN3-259ENST00000637551 HERV-K104P63124 156 aa11.36□□□□□ -0.59
CLN3-259ENST00000637551 KRTAP29-1A8MX34 341 aaPredicted RBP11.35□□□□□ -0.59
CLN3-259ENST00000637551 M0QXV9 152 aa11.35□□□□□ -0.59
CLN3-259ENST00000637551 HERVK_113P61574 105 aa11.35□□□□□ -0.59
CLN3-259ENST00000637551 ERG28Q9UKR5 140 aa11.35□□□□□ -0.59
CLN3-259ENST00000637551 IGLV5-37A0A075B6J1 123 aa11.34□□□□□ -0.59
CLN3-259ENST00000637551 IGKCP01834 107 aa11.34□□□□□ -0.59
CLN3-259ENST00000637551 SYS1-DBNDD2H3BUS1 97 aa11.33□□□□□ -0.6
CLN3-259ENST00000637551 AKR1D1P51857 326 aa11.33□□□□□ -0.6
CLN3-259ENST00000637551 LBHQ53QV2 105 aaPredicted RBP11.33□□□□□ -0.6
CLN3-259ENST00000637551 PET117Q6UWS5 81 aa11.33□□□□□ -0.6
CLN3-259ENST00000637551 FAM19A5Q7Z5A7 132 aaPredicted RBP11.33□□□□□ -0.6
CLN3-259ENST00000637551 KRTAP7-1Q8IUC3 87 aa11.33□□□□□ -0.6
CLN3-259ENST00000637551 PLEKHB2Q96CS7 222 aa11.33□□□□□ -0.6
CLN3-259ENST00000637551 FAM168BA1KXE4 195 aa11.32□□□□□ -0.6
CLN3-259ENST00000637551 H0Y8G0 127 aa11.32□□□□□ -0.6
CLN3-259ENST00000637551 NMUP48645 174 aa11.32□□□□□ -0.6
CLN3-259ENST00000637551 SERTAD4-AS1Q5TG53 156 aa11.32□□□□□ -0.6
CLN3-259ENST00000637551 LEPROTO15243 131 aa11.31□□□□□ -0.6
CLN3-259ENST00000637551 LINC01545Q5VT33 79 aa11.31□□□□□ -0.6
CLN3-259ENST00000637551 SPINK6Q6UWN8 80 aa11.31□□□□□ -0.6
CLN3-259ENST00000637551 PHF5AQ7RTV0 110 aaKnown RBP11.31□□□□□ -0.6
CLN3-259ENST00000637551 XAGE1AQ9HD64 81 aa11.31□□□□□ -0.6
CLN3-259ENST00000637551 MYMXA0A1B0GTQ4 84 aa11.3□□□□□ -0.6
CLN3-259ENST00000637551 PSORS1C2Q9UIG4 136 aa11.3□□□□□ -0.6
CLN3-259ENST00000637551 NDUFA12Q9UI09 145 aa11.29□□□□□ -0.6
CLN3-259ENST00000637551 HNRNPA3P51991 378 aaKnown RBP11.28□□□□□ -0.6
CLN3-259ENST00000637551 SRSF9Q13242 221 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLN3-259ENST00000637551 C22orf24Q9Y442 160 aa11.28□□□□□ -0.6
CLN3-259ENST00000637551 PKHD1L1Q86WI1 4243 aa11.27□□□□□ -0.61
CLN3-259ENST00000637551 PFN2P35080 140 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms