RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 TOMM7Q9P0U1 55 aa12.97□□□□□ -0.33
PNKP-211ENST00000598020 IGLV5-39A0A0G2JS06 123 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 LOC107984640A0A0U1RRK4 108 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 SPINK8P0C7L1 97 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 HAMPP81172 84 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 ODF1Q14990 250 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 C2orf82Q6UX34 121 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 SPACA4Q8TDM5 124 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 C6orf48Q9UBA6 75 aa12.96□□□□□ -0.33
PNKP-211ENST00000598020 CXCL5P42830 114 aa12.95□□□□□ -0.34
PNKP-211ENST00000598020 CKS1BP61024 79 aa12.95□□□□□ -0.34
PNKP-211ENST00000598020 COX7B2Q8TF08 81 aa12.95□□□□□ -0.34
PNKP-211ENST00000598020 LINC00474Q9P2X8 69 aa12.95□□□□□ -0.34
PNKP-211ENST00000598020 A0A096LNI7 61 aa12.94□□□□□ -0.34
PNKP-211ENST00000598020 TLX1NBP0CAT3 122 aa12.94□□□□□ -0.34
PNKP-211ENST00000598020 CHTF8P0CG12 524 aa12.94□□□□□ -0.34
PNKP-211ENST00000598020 TMEM170BQ5T4T1 132 aa12.94□□□□□ -0.34
PNKP-211ENST00000598020 Q8N1X5 172 aa12.94□□□□□ -0.34
PNKP-211ENST00000598020 MAP1LC3CQ9BXW4 147 aa12.93□□□□□ -0.34
PNKP-211ENST00000598020 KRTAP17-1Q9BYP8 105 aa12.93□□□□□ -0.34
PNKP-211ENST00000598020 PTTG1IPP53801 180 aa12.92□□□□□ -0.34
PNKP-211ENST00000598020 IGKV2-24A0A0C4DH68 120 aa12.91□□□□□ -0.34
PNKP-211ENST00000598020 H0Y8G0 127 aa12.91□□□□□ -0.34
PNKP-211ENST00000598020 TMEM223A0PJW6 202 aa12.9□□□□□ -0.34
PNKP-211ENST00000598020 PLAC8Q9NZF1 115 aa12.9□□□□□ -0.34
PNKP-211ENST00000598020 A0A087WYN8 130 aa12.89□□□□□ -0.35
PNKP-211ENST00000598020 PLNP26678 52 aa12.89□□□□□ -0.35
PNKP-211ENST00000598020 MAJINQ3KP22 176 aa12.89□□□□□ -0.35
PNKP-211ENST00000598020 DPH3Q96FX2 82 aa12.89□□□□□ -0.35
PNKP-211ENST00000598020 SYS1-DBNDD2H3BUS1 97 aa12.88□□□□□ -0.35
PNKP-211ENST00000598020 SMR3BP02814 79 aaPredicted RBP12.88□□□□□ -0.35
PNKP-211ENST00000598020 GAGE2BQ13066 116 aa12.88□□□□□ -0.35
PNKP-211ENST00000598020 NDUFC2-KCTD14E9PQ53 114 aa12.87□□□□□ -0.35
PNKP-211ENST00000598020 RPL18AQ02543 176 aaKnown RBP12.87□□□□□ -0.35
PNKP-211ENST00000598020 EPM2AB3EWF7 344 aa12.86□□□□□ -0.35
PNKP-211ENST00000598020 DPM2O94777 84 aa12.86□□□□□ -0.35
PNKP-211ENST00000598020 C9orf116Q5BN46 136 aaPredicted RBP12.86□□□□□ -0.35
PNKP-211ENST00000598020 Q6ZRP5 223 aa12.86□□□□□ -0.35
PNKP-211ENST00000598020 PET117Q6UWS5 81 aa12.85□□□□□ -0.35
PNKP-211ENST00000598020 STPG4Q8N801 248 aa12.85□□□□□ -0.35
PNKP-211ENST00000598020 FAT1Q14517 4588 aa12.84□□□□□ -0.35
PNKP-211ENST00000598020 IGKCP01834 107 aa12.84□□□□□ -0.35
PNKP-211ENST00000598020 SFTA2Q6UW10 78 aa12.84□□□□□ -0.35
PNKP-211ENST00000598020 FAM229AH3BQW9 127 aa12.83□□□□□ -0.36
PNKP-211ENST00000598020 LINC01545Q5VT33 79 aa12.83□□□□□ -0.36
PNKP-211ENST00000598020 LINC00528Q8N1L1 170 aa12.83□□□□□ -0.36
PNKP-211ENST00000598020 PMCHL2Q9BQD1 86 aa12.83□□□□□ -0.36
PNKP-211ENST00000598020 C3orf79P0CE67 100 aa12.82□□□□□ -0.36
PNKP-211ENST00000598020 Q5VSD8 79 aa12.81□□□□□ -0.36
PNKP-211ENST00000598020 ZNF625Q96I27 306 aaPredicted RBP12.81□□□□□ -0.36
PNKP-211ENST00000598020 KRTAP4-5Q9BYR2 181 aa12.81□□□□□ -0.36
PNKP-211ENST00000598020 S100A6P06703 90 aa12.8□□□□□ -0.36
PNKP-211ENST00000598020 GAGE2EQ4V326 116 aa12.8□□□□□ -0.36
PNKP-211ENST00000598020 HIST3H2BBQ8N257 126 aa12.8□□□□□ -0.36
PNKP-211ENST00000598020 GAGE2DQ9UEU5 116 aa12.8□□□□□ -0.36
PNKP-211ENST00000598020 A0A1W2PNN7 141 aa12.79□□□□□ -0.36
PNKP-211ENST00000598020 LEPROTO15243 131 aa12.77□□□□□ -0.37
PNKP-211ENST00000598020 KRTDAPP60985 99 aa12.77□□□□□ -0.37
PNKP-211ENST00000598020 HERVK_113P61574 105 aa12.77□□□□□ -0.37
PNKP-211ENST00000598020 PLA2G1BP04054 148 aaKnown RBP12.76□□□□□ -0.37
PNKP-211ENST00000598020 COX17Q14061 63 aa12.76□□□□□ -0.37
PNKP-211ENST00000598020 C9orf129Q5T035 196 aaKnown RBP12.76□□□□□ -0.37
PNKP-211ENST00000598020 PLEKHB2Q96CS7 222 aa12.76□□□□□ -0.37
PNKP-211ENST00000598020 HIST1H2BLQ99880 126 aa12.76□□□□□ -0.37
PNKP-211ENST00000598020 S100A2P29034 98 aa12.75□□□□□ -0.37
PNKP-211ENST00000598020 ERG28Q9UKR5 140 aa12.75□□□□□ -0.37
PNKP-211ENST00000598020 KRTAP10-4P60372 401 aaPredicted RBP12.73□□□□□ -0.37
PNKP-211ENST00000598020 SNRPEP62304 92 aaKnown RBP12.73□□□□□ -0.37
PNKP-211ENST00000598020 C7orf33Q8WU49 177 aa12.73□□□□□ -0.37
PNKP-211ENST00000598020 NDUFA12Q9UI09 145 aa12.73□□□□□ -0.37
PNKP-211ENST00000598020 FAM168BA1KXE4 195 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 C20orf202A1L168 122 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 C5orf52A6NGY3 159 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 E9PLD3 99 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 J3QQQ9 107 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 HERV-K104P63124 156 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 KRTAP7-1Q8IUC3 87 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 XAGE1AQ9HD64 81 aa12.72□□□□□ -0.37
PNKP-211ENST00000598020 MYMXA0A1B0GTQ4 84 aa12.71□□□□□ -0.37
PNKP-211ENST00000598020 AKR1D1P51857 326 aa12.71□□□□□ -0.37
PNKP-211ENST00000598020 TSPEAR-AS2P59090 65 aa12.71□□□□□ -0.37
PNKP-211ENST00000598020 PFN2P35080 140 aa12.7□□□□□ -0.38
PNKP-211ENST00000598020 NMUP48645 174 aa12.7□□□□□ -0.38
PNKP-211ENST00000598020 RPL37AP61513 92 aaKnown RBP12.7□□□□□ -0.38
PNKP-211ENST00000598020 PLA2G2DQ9UNK4 145 aa12.69□□□□□ -0.38
PNKP-211ENST00000598020 VPS13BQ7Z7G8 4022 aa12.69□□□□□ -0.38
PNKP-211ENST00000598020 LINC00587B1AMM8 73 aa12.68□□□□□ -0.38
PNKP-211ENST00000598020 FAM19A5Q7Z5A7 132 aaPredicted RBP12.68□□□□□ -0.38
PNKP-211ENST00000598020 ABCA13Q86UQ4 5058 aa12.67□□□□□ -0.38
PNKP-211ENST00000598020 LGALS3P17931 250 aaKnown RBP12.67□□□□□ -0.38
PNKP-211ENST00000598020 SRRM2Q9UQ35 2752 aaKnown RBP12.66□□□□□ -0.38
PNKP-211ENST00000598020 PHF5AQ7RTV0 110 aaKnown RBP12.66□□□□□ -0.38
PNKP-211ENST00000598020 SND1-IT1Q9HBX3 110 aa12.66□□□□□ -0.38
PNKP-211ENST00000598020 SERTAD4-AS1Q5TG53 156 aa12.65□□□□□ -0.38
PNKP-211ENST00000598020 M0QXV9 152 aa12.64□□□□□ -0.39
PNKP-211ENST00000598020 LINC00158P58513 81 aa12.64□□□□□ -0.39
PNKP-211ENST00000598020 TP73-AS1Q9UF72 201 aa12.64□□□□□ -0.39
PNKP-211ENST00000598020 SMIM13P0DJ93 91 aa12.63□□□□□ -0.39
PNKP-211ENST00000598020 INAFM2P0DMQ5 153 aa12.63□□□□□ -0.39
PNKP-211ENST00000598020 MEIG1Q5JSS6 88 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms