RNA–Protein interactions for RNA: ENST00000597180.1

IRF3-216, Transcript of interferon regulatory factor 3, human

TSL 5

Gene IRF3, Length 301 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-216	ENST00000597180	PLA2G1B	P04054	148 aa	Known RBP	11.45	□□□□□ -0.58
IRF3-216	ENST00000597180	TLX1NB	P0CAT3	122 aa		11.45	□□□□□ -0.58
IRF3-216	ENST00000597180	GAGE2B	Q13066	116 aa		11.45	□□□□□ -0.58
IRF3-216	ENST00000597180		H3BRM9	83 aa		11.44	□□□□□ -0.58
IRF3-216	ENST00000597180	C6orf226	Q5I0X4	101 aa		11.44	□□□□□ -0.58
IRF3-216	ENST00000597180	STPG4	Q8N801	248 aa		11.44	□□□□□ -0.58
IRF3-216	ENST00000597180	TRAV12-1	A0A0B4J245	112 aa		11.43	□□□□□ -0.58
IRF3-216	ENST00000597180	NUPR1	O60356	82 aa		11.43	□□□□□ -0.58
IRF3-216	ENST00000597180	ZNF22	P17026	224 aa	Predicted RBP	11.43	□□□□□ -0.58
IRF3-216	ENST00000597180	CKS1B	P61024	79 aa		11.43	□□□□□ -0.58
IRF3-216	ENST00000597180	RPL18A	Q02543	176 aa	Known RBP	11.43	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BK	O60814	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BJ	P06899	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	SPINK8	P0C7L1	97 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	S100A1	P23297	94 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BO	P23527	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BB	P33778	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	CXCL5	P42830	114 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BD	P58876	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	KRTAP10-4	P60372	401 aa	Predicted RBP	11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BC	P62807	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST2H2BE	Q16778	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BH	Q93079	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BN	Q99877	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	HIST1H2BM	Q99879	126 aa		11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.42	□□□□□ -0.58
IRF3-216	ENST00000597180	C11orf86	A6NJI1	115 aa		11.41	□□□□□ -0.58
IRF3-216	ENST00000597180	COX7B2	Q8TF08	81 aa		11.41	□□□□□ -0.58
IRF3-216	ENST00000597180	IGLV5-39	A0A0G2JS06	123 aa		11.4	□□□□□ -0.58
IRF3-216	ENST00000597180	LEPROTL1	O95214	131 aa		11.4	□□□□□ -0.58
IRF3-216	ENST00000597180		Q6ZRP5	223 aa		11.4	□□□□□ -0.58
IRF3-216	ENST00000597180	ABCA13	Q86UQ4	5058 aa		11.39	□□□□□ -0.59
IRF3-216	ENST00000597180		F8VRH5	84 aa		11.39	□□□□□ -0.59
IRF3-216	ENST00000597180	ATP6V1G1	O75348	118 aa		11.39	□□□□□ -0.59
IRF3-216	ENST00000597180	INAFM2	P0DMQ5	153 aa		11.39	□□□□□ -0.59
IRF3-216	ENST00000597180	SRRM2	Q9UQ35	2752 aa	Known RBP	11.39	□□□□□ -0.59
IRF3-216	ENST00000597180	NDUFC2-KCTD14	E9PQ53	114 aa		11.38	□□□□□ -0.59
IRF3-216	ENST00000597180	RPL37A	P61513	92 aa	Known RBP	11.38	□□□□□ -0.59
IRF3-216	ENST00000597180	C9orf116	Q5BN46	136 aa	Predicted RBP	11.38	□□□□□ -0.59
IRF3-216	ENST00000597180	PCLO	Q9Y6V0	5065 aa		11.38	□□□□□ -0.59
IRF3-216	ENST00000597180	HSPB8	Q9UJY1	196 aa		11.37	□□□□□ -0.59
IRF3-216	ENST00000597180		A0A1W2PNN7	141 aa		11.36	□□□□□ -0.59
IRF3-216	ENST00000597180	TMEM170B	Q5T4T1	132 aa		11.36	□□□□□ -0.59
IRF3-216	ENST00000597180	ODF1	Q14990	250 aa		11.35	□□□□□ -0.59
IRF3-216	ENST00000597180	GAGE2E	Q4V326	116 aa		11.35	□□□□□ -0.59
IRF3-216	ENST00000597180	C7orf33	Q8WU49	177 aa		11.35	□□□□□ -0.59
IRF3-216	ENST00000597180	GAGE2D	Q9UEU5	116 aa		11.35	□□□□□ -0.59
IRF3-216	ENST00000597180	FABP4	P15090	132 aa		11.33	□□□□□ -0.6
IRF3-216	ENST00000597180	TMEM223	A0PJW6	202 aa		11.32	□□□□□ -0.6
IRF3-216	ENST00000597180	COA6	Q5JTJ3	125 aa	Known RBP	11.32	□□□□□ -0.6
IRF3-216	ENST00000597180		H0Y8G0	127 aa		11.31	□□□□□ -0.6
IRF3-216	ENST00000597180	C9orf129	Q5T035	196 aa	Known RBP	11.31	□□□□□ -0.6
IRF3-216	ENST00000597180	FLG2	Q5D862	2391 aa	Predicted RBP	11.31	□□□□□ -0.6
IRF3-216	ENST00000597180	FAM168B	A1KXE4	195 aa		11.3	□□□□□ -0.6
IRF3-216	ENST00000597180	SFTA2	Q6UW10	78 aa		11.28	□□□□□ -0.6
IRF3-216	ENST00000597180	KRTAP7-1	Q8IUC3	87 aa		11.28	□□□□□ -0.6
IRF3-216	ENST00000597180	MAP1LC3C	Q9BXW4	147 aa		11.28	□□□□□ -0.6
IRF3-216	ENST00000597180	PLN	P26678	52 aa		11.27	□□□□□ -0.61
IRF3-216	ENST00000597180	PRR3	P79522	188 aa	Known RBP	11.27	□□□□□ -0.61
IRF3-216	ENST00000597180	HNRNPA3	P51991	378 aa	Known RBP	11.26	□□□□□ -0.61
IRF3-216	ENST00000597180	PHF5A	Q7RTV0	110 aa	Known RBP	11.26	□□□□□ -0.61
IRF3-216	ENST00000597180	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	11.26	□□□□□ -0.61
IRF3-216	ENST00000597180	ZNF625	Q96I27	306 aa	Predicted RBP	11.26	□□□□□ -0.61
IRF3-216	ENST00000597180	XAGE1A	Q9HD64	81 aa		11.26	□□□□□ -0.61
IRF3-216	ENST00000597180	DPM2	O94777	84 aa		11.25	□□□□□ -0.61
IRF3-216	ENST00000597180	PKHD1L1	Q86WI1	4243 aa		11.25	□□□□□ -0.61
IRF3-216	ENST00000597180	SYS1-DBNDD2	H3BUS1	97 aa		11.23	□□□□□ -0.61
IRF3-216	ENST00000597180	IGKC	P01834	107 aa		11.23	□□□□□ -0.61
IRF3-216	ENST00000597180	COX17	Q14061	63 aa		11.23	□□□□□ -0.61
IRF3-216	ENST00000597180	PMCHL2	Q9BQD1	86 aa		11.23	□□□□□ -0.61
IRF3-216	ENST00000597180	ERG28	Q9UKR5	140 aa		11.23	□□□□□ -0.61
IRF3-216	ENST00000597180		M0QXV9	152 aa		11.22	□□□□□ -0.61
IRF3-216	ENST00000597180	SERTAD4-AS1	Q5TG53	156 aa		11.22	□□□□□ -0.61
IRF3-216	ENST00000597180	PFN2	P35080	140 aa		11.21	□□□□□ -0.61
IRF3-216	ENST00000597180	PSORS1C2	Q9UIG4	136 aa		11.2	□□□□□ -0.62
IRF3-216	ENST00000597180	PLA2G2D	Q9UNK4	145 aa		11.2	□□□□□ -0.62
IRF3-216	ENST00000597180	LEPROT	O15243	131 aa		11.19	□□□□□ -0.62
IRF3-216	ENST00000597180	HERVK_113	P61574	105 aa		11.19	□□□□□ -0.62
IRF3-216	ENST00000597180	LINC01545	Q5VT33	79 aa		11.19	□□□□□ -0.62
IRF3-216	ENST00000597180	PET117	Q6UWS5	81 aa		11.19	□□□□□ -0.62
IRF3-216	ENST00000597180	KRTAP11-1	Q8IUC1	163 aa		11.18	□□□□□ -0.62
IRF3-216	ENST00000597180	PLEKHB2	Q96CS7	222 aa		11.18	□□□□□ -0.62
IRF3-216	ENST00000597180	TP73-AS1	Q9UF72	201 aa		11.18	□□□□□ -0.62
IRF3-216	ENST00000597180	C22orf24	Q9Y442	160 aa		11.18	□□□□□ -0.62
IRF3-216	ENST00000597180	MYCBP2	O75592	4640 aa		11.18	□□□□□ -0.62
IRF3-216	ENST00000597180	C3orf79	P0CE67	100 aa		11.17	□□□□□ -0.62
IRF3-216	ENST00000597180	TSPEAR-AS2	P59090	65 aa		11.17	□□□□□ -0.62
IRF3-216	ENST00000597180	HERV-K104	P63124	156 aa		11.17	□□□□□ -0.62
IRF3-216	ENST00000597180	SND1-IT1	Q9HBX3	110 aa		11.17	□□□□□ -0.62
IRF3-216	ENST00000597180	NDUFA12	Q9UI09	145 aa		11.17	□□□□□ -0.62
IRF3-216	ENST00000597180	IGLV5-37	A0A075B6J1	123 aa		11.16	□□□□□ -0.62
IRF3-216	ENST00000597180	KRTAP29-1	A8MX34	341 aa	Predicted RBP	11.16	□□□□□ -0.62
IRF3-216	ENST00000597180	MYMX	A0A1B0GTQ4	84 aa		11.15	□□□□□ -0.62
IRF3-216	ENST00000597180		J3QQQ9	107 aa		11.14	□□□□□ -0.63
IRF3-216	ENST00000597180	UBE2B	P63146	152 aa		11.14	□□□□□ -0.63
IRF3-216	ENST00000597180	SRSF9	Q13242	221 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
IRF3-216	ENST00000597180	LBH	Q53QV2	105 aa	Predicted RBP	11.14	□□□□□ -0.63
IRF3-216	ENST00000597180	C1orf137	Q5JT78	98 aa		11.14	□□□□□ -0.63
IRF3-216	ENST00000597180	MRPL55	Q7Z7F7	128 aa	Known RBP	11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms