RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	PRR34	Q9NV39	138 aa		4.28	□□□□□ -1.72
CLN3-223	ENST00000566472	HIVEP2	P31629	2446 aa		4.28	□□□□□ -1.72
CLN3-223	ENST00000566472	SON	P18583	2426 aa	Known RBP	4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	ZAN	Q9Y493	2812 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	TEX15	Q9BXT5	2789 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	GVQW2	A0A096LPI5	108 aa	Predicted RBP	4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	DEFB4A	O15263	64 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	DNAL4	O96015	105 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	EGFEM1P	Q0D2K5	195 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	CLPSL2	Q6UWE3	100 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	FAM218A	Q96MZ4	157 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	AKAP9	Q99996	3911 aa		4.27	□□□□□ -1.73
CLN3-223	ENST00000566472	MXRA5	Q9NR99	2828 aa		4.26	□□□□□ -1.73
CLN3-223	ENST00000566472		A0A0J9YWU9	116 aa		4.26	□□□□□ -1.73
CLN3-223	ENST00000566472	SPAG11B	Q08648	103 aa		4.26	□□□□□ -1.73
CLN3-223	ENST00000566472	C15orf53	Q8NAA6	179 aa		4.26	□□□□□ -1.73
CLN3-223	ENST00000566472	LINC00167	Q96N53	147 aa		4.26	□□□□□ -1.73
CLN3-223	ENST00000566472	TMEM126A	Q9H061	195 aa		4.26	□□□□□ -1.73
CLN3-223	ENST00000566472	CELSR2	Q9HCU4	2923 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	HTN3	P15516	51 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	GAGE2B	Q13066	116 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	GAGE2E	Q4V326	116 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	LYPD5	Q6UWN5	251 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	CCDC168	Q8NDH2	2452 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	OR13C6P	Q8NH95	151 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	IMUP	Q9GZP8	106 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	GAGE2D	Q9UEU5	116 aa		4.25	□□□□□ -1.73
CLN3-223	ENST00000566472	CSMD2	Q7Z408	3487 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472	UNC79	Q9P2D8	2635 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472		A0A087WYN8	130 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472	TRBV7-7	A0A0K0K1E9	115 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472		F8WDY8	70 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472	SDIM1	Q6ZPB5	146 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472	OBSCN-AS1	Q96MR7	158 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472	C22orf24	Q9Y442	160 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472	TLN2	Q9Y4G6	2542 aa		4.24	□□□□□ -1.73
CLN3-223	ENST00000566472	WNK1	Q9H4A3	2382 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	IGLV10-54	A0A075B6I4	117 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472		H3BQ85	93 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	LECT2	O14960	151 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	NANOS2	P60321	138 aa	Known RBP	4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	KRTAP10-11	P60412	298 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	KPRP	Q5T749	579 aa	Predicted RBP	4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	ENHO	Q6UWT2	76 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	LINC00643	Q86TS7	51 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472		Q8N3U1	123 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	ORMDL1	Q9P0S3	153 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	KLK12	Q9UKR0	248 aa		4.23	□□□□□ -1.73
CLN3-223	ENST00000566472	CYSRT1	A8MQ03	144 aa		4.22	□□□□□ -1.73
CLN3-223	ENST00000566472	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.22	□□□□□ -1.73
CLN3-223	ENST00000566472	KRTAP24-1	Q3LI83	254 aa		4.22	□□□□□ -1.73
CLN3-223	ENST00000566472		Q9HAA7	133 aa		4.22	□□□□□ -1.73
CLN3-223	ENST00000566472	CRYBG3	Q68DQ2	2970 aa		4.22	□□□□□ -1.73
CLN3-223	ENST00000566472	ZNF469	Q96JG9	3925 aa	Predicted RBP	4.22	□□□□□ -1.73
CLN3-223	ENST00000566472	CENPE	Q02224	2701 aa		4.22	□□□□□ -1.73
CLN3-223	ENST00000566472	NDUFV3	P56181	108 aa	Known RBP	4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	OXLD1	Q5BKU9	147 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	TTC32	Q5I0X7	151 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	S100A7L2	Q5SY68	101 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	KRTAP26-1	Q6PEX3	210 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	C3orf56	Q8N813	242 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	C2orf48	Q96LS8	159 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	ANAPC13	Q9BS18	74 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	TENM4	Q6N022	2769 aa		4.21	□□□□□ -1.74
CLN3-223	ENST00000566472	ACAN	P16112	2415 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	NBPF19	A0A087WUL8	3843 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	TMEM256-PLSCR3	K7ERE1	68 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	NCR3	O14931	201 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	IGLV6-57	P01721	117 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	LINC01556	Q5JQF7	62 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	C10orf25	Q5T742	122 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472		Q6ZTC4	211 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	WFDC10B	Q8IUB3	73 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472		Q8N814	137 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	RETN	Q9HD89	108 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	C6orf48	Q9UBA6	75 aa		4.2	□□□□□ -1.74
CLN3-223	ENST00000566472	CHD6	Q8TD26	2715 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	FASN	P49327	2511 aa	Known RBP	4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	TRBV7-6	A0A0J9YX20	115 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	ZNF561-AS1	K7EIQ3	104 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	GHRH	P01286	108 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	C6orf99	Q4VX62	202 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	C9orf116	Q5BN46	136 aa	Predicted RBP	4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	GAGE2A	Q6NT46	116 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	LINC00575	Q6W349	94 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	C6orf223	Q8N319	242 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	NOTCH3	Q9UM47	2321 aa		4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	FN1	P02751	2386 aa	Known RBP	4.19	□□□□□ -1.74
CLN3-223	ENST00000566472	MTOR	P42345	2549 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472	DEFB131B	A0A096LNP1	70 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472	PRR3	P79522	188 aa	Known RBP	4.18	□□□□□ -1.74
CLN3-223	ENST00000566472		Q6JHZ5	121 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472		Q8NDZ9	215 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472	C11orf45	Q8TAV5	145 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472	SMCR5	Q8TEV8	140 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472	CAMK2N2	Q96S95	79 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472	C14orf132	Q9NPU4	83 aa		4.18	□□□□□ -1.74
CLN3-223	ENST00000566472	C2CD3	Q4AC94	2353 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	SETX	Q7Z333	2677 aa	Known RBP	4.17	□□□□□ -1.74

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