RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 C6orf226Q5I0X4 101 aa13.92□□□□□ -0.18
VEGFA-217ENST00000518538 IFI27L1Q96BM0 104 aa13.92□□□□□ -0.18
VEGFA-217ENST00000518538 CKS1BP61024 79 aa13.91□□□□□ -0.18
VEGFA-217ENST00000518538 RPL18AQ02543 176 aaKnown RBP13.91□□□□□ -0.18
VEGFA-217ENST00000518538 STPG4Q8N801 248 aa13.91□□□□□ -0.18
VEGFA-217ENST00000518538 H3BRM9 83 aa13.9□□□□□ -0.18
VEGFA-217ENST00000518538 TLX1NBP0CAT3 122 aa13.9□□□□□ -0.18
VEGFA-217ENST00000518538 SPINK8P0C7L1 97 aa13.89□□□□□ -0.19
VEGFA-217ENST00000518538 TRAV12-1A0A0B4J245 112 aa13.88□□□□□ -0.19
VEGFA-217ENST00000518538 ZNF22P17026 224 aaPredicted RBP13.88□□□□□ -0.19
VEGFA-217ENST00000518538 CXCL5P42830 114 aa13.88□□□□□ -0.19
VEGFA-217ENST00000518538 COX7B2Q8TF08 81 aa13.87□□□□□ -0.19
VEGFA-217ENST00000518538 CHTOPQ9Y3Y2 248 aaKnown RBP13.87□□□□□ -0.19
VEGFA-217ENST00000518538 ABCA13Q86UQ4 5058 aa13.87□□□□□ -0.19
VEGFA-217ENST00000518538 C11orf86A6NJI1 115 aa13.86□□□□□ -0.19
VEGFA-217ENST00000518538 NUPR1O60356 82 aa13.86□□□□□ -0.19
VEGFA-217ENST00000518538 INAFM2P0DMQ5 153 aa13.86□□□□□ -0.19
VEGFA-217ENST00000518538 S100A1P23297 94 aa13.86□□□□□ -0.19
VEGFA-217ENST00000518538 PCLOQ9Y6V0 5065 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 F8VRH5 84 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BKO60814 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 LEPROTL1O95214 131 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BJP06899 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BOP23527 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BBP33778 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BDP58876 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 RPL37AP61513 92 aaKnown RBP13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BCP62807 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST2H2BEQ16778 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.85□□□□□ -0.19
VEGFA-217ENST00000518538 Q6ZRP5 223 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BHQ93079 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BNQ99877 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 HIST1H2BMQ99879 126 aa13.85□□□□□ -0.19
VEGFA-217ENST00000518538 KRTAP10-4P60372 401 aaPredicted RBP13.84□□□□□ -0.19
VEGFA-217ENST00000518538 NDUFC2-KCTD14E9PQ53 114 aa13.83□□□□□ -0.2
VEGFA-217ENST00000518538 C9orf116Q5BN46 136 aaPredicted RBP13.83□□□□□ -0.2
VEGFA-217ENST00000518538 IGLV5-39A0A0G2JS06 123 aa13.82□□□□□ -0.2
VEGFA-217ENST00000518538 TMEM170BQ5T4T1 132 aa13.82□□□□□ -0.2
VEGFA-217ENST00000518538 C7orf33Q8WU49 177 aa13.82□□□□□ -0.2
VEGFA-217ENST00000518538 HSPB8Q9UJY1 196 aa13.82□□□□□ -0.2
VEGFA-217ENST00000518538 A0A1W2PNN7 141 aa13.81□□□□□ -0.2
VEGFA-217ENST00000518538 ATP6V1G1O75348 118 aa13.81□□□□□ -0.2
VEGFA-217ENST00000518538 GAGE2EQ4V326 116 aa13.81□□□□□ -0.2
VEGFA-217ENST00000518538 GAGE2DQ9UEU5 116 aa13.81□□□□□ -0.2
VEGFA-217ENST00000518538 FABP4P15090 132 aa13.78□□□□□ -0.2
VEGFA-217ENST00000518538 H0Y8G0 127 aa13.77□□□□□ -0.21
VEGFA-217ENST00000518538 ODF1Q14990 250 aa13.77□□□□□ -0.21
VEGFA-217ENST00000518538 SRRM2Q9UQ35 2752 aaKnown RBP13.76□□□□□ -0.21
VEGFA-217ENST00000518538 VPS13BQ7Z7G8 4022 aa13.76□□□□□ -0.21
VEGFA-217ENST00000518538 TMEM223A0PJW6 202 aa13.74□□□□□ -0.21
VEGFA-217ENST00000518538 FAM168BA1KXE4 195 aa13.73□□□□□ -0.21
VEGFA-217ENST00000518538 C9orf129Q5T035 196 aaKnown RBP13.73□□□□□ -0.21
VEGFA-217ENST00000518538 COA6Q5JTJ3 125 aaKnown RBP13.71□□□□□ -0.21
VEGFA-217ENST00000518538 SFTA2Q6UW10 78 aa13.71□□□□□ -0.21
VEGFA-217ENST00000518538 MAP1LC3CQ9BXW4 147 aa13.71□□□□□ -0.21
VEGFA-217ENST00000518538 PLNP26678 52 aa13.7□□□□□ -0.22
VEGFA-217ENST00000518538 PRR3P79522 188 aaKnown RBP13.7□□□□□ -0.22
VEGFA-217ENST00000518538 FAM19A5Q7Z5A7 132 aaPredicted RBP13.7□□□□□ -0.22
VEGFA-217ENST00000518538 PHF5AQ7RTV0 110 aaKnown RBP13.69□□□□□ -0.22
VEGFA-217ENST00000518538 XAGE1AQ9HD64 81 aa13.69□□□□□ -0.22
VEGFA-217ENST00000518538 HNRNPA3P51991 378 aaKnown RBP13.68□□□□□ -0.22
VEGFA-217ENST00000518538 KRTAP7-1Q8IUC3 87 aa13.68□□□□□ -0.22
VEGFA-217ENST00000518538 DPM2O94777 84 aa13.67□□□□□ -0.22
VEGFA-217ENST00000518538 ZNF625Q96I27 306 aaPredicted RBP13.67□□□□□ -0.22
VEGFA-217ENST00000518538 M0QXV9 152 aa13.65□□□□□ -0.22
VEGFA-217ENST00000518538 PMCHL2Q9BQD1 86 aa13.65□□□□□ -0.22
VEGFA-217ENST00000518538 ERG28Q9UKR5 140 aa13.65□□□□□ -0.22
VEGFA-217ENST00000518538 SYS1-DBNDD2H3BUS1 97 aa13.64□□□□□ -0.23
VEGFA-217ENST00000518538 IGKCP01834 107 aa13.64□□□□□ -0.23
VEGFA-217ENST00000518538 COX17Q14061 63 aa13.64□□□□□ -0.23
VEGFA-217ENST00000518538 PFN2P35080 140 aa13.63□□□□□ -0.23
VEGFA-217ENST00000518538 SERTAD4-AS1Q5TG53 156 aa13.63□□□□□ -0.23
VEGFA-217ENST00000518538 FLG2Q5D862 2391 aaPredicted RBP13.62□□□□□ -0.23
VEGFA-217ENST00000518538 HERVK_113P61574 105 aa13.6□□□□□ -0.23
VEGFA-217ENST00000518538 PSORS1C2Q9UIG4 136 aa13.6□□□□□ -0.23
VEGFA-217ENST00000518538 LEPROTO15243 131 aa13.59□□□□□ -0.23
VEGFA-217ENST00000518538 PET117Q6UWS5 81 aa13.59□□□□□ -0.23
VEGFA-217ENST00000518538 PLEKHB2Q96CS7 222 aa13.59□□□□□ -0.23
VEGFA-217ENST00000518538 PLA2G2DQ9UNK4 145 aa13.59□□□□□ -0.23
VEGFA-217ENST00000518538 C22orf24Q9Y442 160 aa13.59□□□□□ -0.23
VEGFA-217ENST00000518538 LINC01545Q5VT33 79 aa13.58□□□□□ -0.24
VEGFA-217ENST00000518538 NDUFA12Q9UI09 145 aa13.58□□□□□ -0.24
VEGFA-217ENST00000518538 HERV-K104P63124 156 aa13.57□□□□□ -0.24
VEGFA-217ENST00000518538 UBE2BP63146 152 aa13.57□□□□□ -0.24
VEGFA-217ENST00000518538 KRTAP11-1Q8IUC1 163 aa13.57□□□□□ -0.24
VEGFA-217ENST00000518538 SND1-IT1Q9HBX3 110 aa13.57□□□□□ -0.24
VEGFA-217ENST00000518538 TP73-AS1Q9UF72 201 aa13.57□□□□□ -0.24
VEGFA-217ENST00000518538 KRTAP29-1A8MX34 341 aaPredicted RBP13.56□□□□□ -0.24
VEGFA-217ENST00000518538 C3orf79P0CE67 100 aa13.56□□□□□ -0.24
VEGFA-217ENST00000518538 TSPEAR-AS2P59090 65 aa13.56□□□□□ -0.24
VEGFA-217ENST00000518538 MYMXA0A1B0GTQ4 84 aa13.55□□□□□ -0.24
VEGFA-217ENST00000518538 LBHQ53QV2 105 aaPredicted RBP13.55□□□□□ -0.24
VEGFA-217ENST00000518538 C1orf137Q5JT78 98 aa13.55□□□□□ -0.24
VEGFA-217ENST00000518538 MYCBP2O75592 4640 aa13.54□□□□□ -0.24
VEGFA-217ENST00000518538 IGLV5-37A0A075B6J1 123 aa13.54□□□□□ -0.24
VEGFA-217ENST00000518538 J3QQQ9 107 aa13.54□□□□□ -0.24
VEGFA-217ENST00000518538 LINC00158P58513 81 aa13.54□□□□□ -0.24
VEGFA-217ENST00000518538 MRPL55Q7Z7F7 128 aaKnown RBP13.54□□□□□ -0.24
VEGFA-217ENST00000518538 OXTP01178 125 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms