RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 FAT2Q9NYQ8 4349 aa13.02□□□□□ -0.32
USP53-203ENST00000507597 SLPIP03973 132 aa13.02□□□□□ -0.33
USP53-203ENST00000507597 Q6ZRU5 148 aa13.02□□□□□ -0.33
USP53-203ENST00000507597 PLEKHB2Q96CS7 222 aa13.01□□□□□ -0.33
USP53-203ENST00000507597 FUSP35637 526 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP53-203ENST00000507597 UNQ6190/PRO20217Q6UXQ8 127 aa12.99□□□□□ -0.33
USP53-203ENST00000507597 LINC00474Q9P2X8 69 aa12.99□□□□□ -0.33
USP53-203ENST00000507597 LOC107984640A0A0U1RRK4 108 aa12.98□□□□□ -0.33
USP53-203ENST00000507597 LEPROTO15243 131 aa12.98□□□□□ -0.33
USP53-203ENST00000507597 C2orf82Q6UX34 121 aa12.97□□□□□ -0.33
USP53-203ENST00000507597 LINC00587B1AMM8 73 aa12.96□□□□□ -0.33
USP53-203ENST00000507597 HSBP1L1C9JCN9 74 aa12.95□□□□□ -0.34
USP53-203ENST00000507597 E9PLD3 99 aa12.95□□□□□ -0.34
USP53-203ENST00000507597 SCGB1D1O95968 90 aa12.95□□□□□ -0.34
USP53-203ENST00000507597 LGALS3P17931 250 aaKnown RBP12.95□□□□□ -0.34
USP53-203ENST00000507597 SDIM1Q6ZPB5 146 aa12.95□□□□□ -0.34
USP53-203ENST00000507597 PKD1P98161 4303 aa12.95□□□□□ -0.34
USP53-203ENST00000507597 MYMXA0A1B0GTQ4 84 aa12.94□□□□□ -0.34
USP53-203ENST00000507597 TLX1NBP0CAT3 122 aa12.94□□□□□ -0.34
USP53-203ENST00000507597 NMUP48645 174 aa12.94□□□□□ -0.34
USP53-203ENST00000507597 HERV-K104P63124 156 aa12.94□□□□□ -0.34
USP53-203ENST00000507597 DPH3Q96FX2 82 aa12.94□□□□□ -0.34
USP53-203ENST00000507597 C6orf48Q9UBA6 75 aa12.94□□□□□ -0.34
USP53-203ENST00000507597 J3QQQ9 107 aa12.93□□□□□ -0.34
USP53-203ENST00000507597 KRTAP10-1P60331 282 aa12.93□□□□□ -0.34
USP53-203ENST00000507597 LINC01620Q4KN68 170 aa12.93□□□□□ -0.34
USP53-203ENST00000507597 C10orf25Q5T742 122 aa12.93□□□□□ -0.34
USP53-203ENST00000507597 NDUFA12Q9UI09 145 aa12.92□□□□□ -0.34
USP53-203ENST00000507597 NDUFC2-KCTD14E9PQ53 114 aa12.91□□□□□ -0.34
USP53-203ENST00000507597 RPL18AQ02543 176 aaKnown RBP12.91□□□□□ -0.34
USP53-203ENST00000507597 COX17Q14061 63 aa12.91□□□□□ -0.34
USP53-203ENST00000507597 DNAH11Q96DT5 4516 aa12.9□□□□□ -0.34
USP53-203ENST00000507597 HECTD4Q9Y4D8 3996 aa12.89□□□□□ -0.35
USP53-203ENST00000507597 GAGE2BQ13066 116 aa12.89□□□□□ -0.35
USP53-203ENST00000507597 STPG4Q8N801 248 aa12.89□□□□□ -0.35
USP53-203ENST00000507597 ZNF625Q96I27 306 aaPredicted RBP12.88□□□□□ -0.35
USP53-203ENST00000507597 IGKV2-24A0A0C4DH68 120 aa12.87□□□□□ -0.35
USP53-203ENST00000507597 PTTG1IPP53801 180 aa12.87□□□□□ -0.35
USP53-203ENST00000507597 Q6ZSA8 131 aa12.87□□□□□ -0.35
USP53-203ENST00000507597 ATOH7Q8N100 152 aa12.87□□□□□ -0.35
USP53-203ENST00000507597 ERG28Q9UKR5 140 aa12.87□□□□□ -0.35
USP53-203ENST00000507597 CDK2AP2O75956 126 aa12.86□□□□□ -0.35
USP53-203ENST00000507597 MAJINQ3KP22 176 aa12.86□□□□□ -0.35
USP53-203ENST00000507597 MEIG1Q5JSS6 88 aa12.86□□□□□ -0.35
USP53-203ENST00000507597 CIRBPQ14011 172 aaKnown RBP12.85□□□□□ -0.35
USP53-203ENST00000507597 JOSD1Q15040 202 aaPredicted RBP12.85□□□□□ -0.35
USP53-203ENST00000507597 C9orf116Q5BN46 136 aaPredicted RBP12.85□□□□□ -0.35
USP53-203ENST00000507597 A0A096LNI7 61 aa12.84□□□□□ -0.35
USP53-203ENST00000507597 GAGE2EQ4V326 116 aa12.84□□□□□ -0.35
USP53-203ENST00000507597 GAGE2DQ9UEU5 116 aa12.84□□□□□ -0.35
USP53-203ENST00000507597 PFN2P35080 140 aa12.83□□□□□ -0.36
USP53-203ENST00000507597 LINC00158P58513 81 aa12.83□□□□□ -0.36
USP53-203ENST00000507597 Q6ZRP5 223 aa12.83□□□□□ -0.36
USP53-203ENST00000507597 SPACA4Q8TDM5 124 aa12.83□□□□□ -0.36
USP53-203ENST00000507597 TSPEAR-AS2P59090 65 aa12.81□□□□□ -0.36
USP53-203ENST00000507597 FAM30AQ9NZY2 134 aa12.81□□□□□ -0.36
USP53-203ENST00000507597 ZNF815PA8K554 130 aa12.8□□□□□ -0.36
USP53-203ENST00000507597 LCE2DQ5TA82 110 aaPredicted RBP12.8□□□□□ -0.36
USP53-203ENST00000507597 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.8□□□□□ -0.36
USP53-203ENST00000507597 CHTF8P0CG12 524 aa12.79□□□□□ -0.36
USP53-203ENST00000507597 KRTAP17-1Q9BYP8 105 aa12.79□□□□□ -0.36
USP53-203ENST00000507597 ANKRD39Q53RE8 183 aa12.78□□□□□ -0.36
USP53-203ENST00000507597 DNAH5Q8TE73 4624 aa12.77□□□□□ -0.36
USP53-203ENST00000507597 A0A087WYN8 130 aa12.77□□□□□ -0.37
USP53-203ENST00000507597 SCXQ7RTU7 201 aa12.77□□□□□ -0.37
USP53-203ENST00000507597 IGKV2D-26A0A0A0MRZ7 120 aa12.76□□□□□ -0.37
USP53-203ENST00000507597 SMIM13P0DJ93 91 aa12.76□□□□□ -0.37
USP53-203ENST00000507597 SCGB1D4Q6XE38 83 aa12.76□□□□□ -0.37
USP53-203ENST00000507597 CIRBP-AS1Q8TBR5 109 aa12.76□□□□□ -0.37
USP53-203ENST00000507597 VAMP8Q9BV40 100 aa12.76□□□□□ -0.37
USP53-203ENST00000507597 PLAC8Q9NZF1 115 aa12.76□□□□□ -0.37
USP53-203ENST00000507597 PKHD1P08F94 4074 aa12.75□□□□□ -0.37
USP53-203ENST00000507597 A0A0J9YXY3 114 aa12.75□□□□□ -0.37
USP53-203ENST00000507597 XGP55808 180 aa12.75□□□□□ -0.37
USP53-203ENST00000507597 A0A0U1RRA0 63 aa12.74□□□□□ -0.37
USP53-203ENST00000507597 TIMM17BO60830 172 aa12.74□□□□□ -0.37
USP53-203ENST00000507597 MIEN1Q9BRT3 115 aa12.74□□□□□ -0.37
USP53-203ENST00000507597 XAGE1AQ9HD64 81 aa12.74□□□□□ -0.37
USP53-203ENST00000507597 PANO1I0J062 215 aa12.73□□□□□ -0.37
USP53-203ENST00000507597 RPL24P83731 157 aaKnown RBP12.73□□□□□ -0.37
USP53-203ENST00000507597 DYNC1H1Q14204 4646 aaKnown RBP12.72□□□□□ -0.37
USP53-203ENST00000507597 MIR7-3HGQ8N6C7 128 aa12.72□□□□□ -0.37
USP53-203ENST00000507597 C7orf33Q8WU49 177 aa12.72□□□□□ -0.37
USP53-203ENST00000507597 COPS9Q8WXC6 57 aa12.72□□□□□ -0.37
USP53-203ENST00000507597 SND1-IT1Q9HBX3 110 aa12.72□□□□□ -0.37
USP53-203ENST00000507597 PLA2G2DQ9UNK4 145 aa12.72□□□□□ -0.37
USP53-203ENST00000507597 S100A12P80511 92 aa12.71□□□□□ -0.37
USP53-203ENST00000507597 PYY3Q5JQD4 70 aa12.71□□□□□ -0.37
USP53-203ENST00000507597 C9orf129Q5T035 196 aaKnown RBP12.71□□□□□ -0.37
USP53-203ENST00000507597 LRP1BQ9NZR2 4599 aa12.71□□□□□ -0.38
USP53-203ENST00000507597 TMEM238C9JI98 176 aa12.7□□□□□ -0.38
USP53-203ENST00000507597 SPATA45Q537H7 98 aa12.7□□□□□ -0.38
USP53-203ENST00000507597 A0A1W2PNN7 141 aa12.69□□□□□ -0.38
USP53-203ENST00000507597 LBHQ53QV2 105 aaPredicted RBP12.69□□□□□ -0.38
USP53-203ENST00000507597 PAM16Q9Y3D7 125 aa12.69□□□□□ -0.38
USP53-203ENST00000507597 EPM2AB3EWF7 344 aa12.68□□□□□ -0.38
USP53-203ENST00000507597 FAM229AH3BQW9 127 aa12.68□□□□□ -0.38
USP53-203ENST00000507597 Q6ZVH6 145 aa12.68□□□□□ -0.38
USP53-203ENST00000507597 FAM19A5Q7Z5A7 132 aaPredicted RBP12.68□□□□□ -0.38
USP53-203ENST00000507597 PCP2Q8IVA1 136 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms