RNA–Protein interactions for RNA: ENST00000505886.5

PDLIM3-206, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4

Gene PDLIM3, Length 571 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-206ENST00000505886 ZC2HC1BQ5TFG8 222 aa9.79□□□□□ -0.84
PDLIM3-206ENST00000505886 SLC7A5P1Q8MH63 180 aa9.79□□□□□ -0.84
PDLIM3-206ENST00000505886 URB1-AS1Q96HZ7 61 aa9.79□□□□□ -0.84
PDLIM3-206ENST00000505886 C6orf48Q9UBA6 75 aa9.79□□□□□ -0.84
PDLIM3-206ENST00000505886 KRTAP29-1A8MX34 341 aaPredicted RBP9.78□□□□□ -0.84
PDLIM3-206ENST00000505886 IGLC3P0DOY3 106 aa9.78□□□□□ -0.84
PDLIM3-206ENST00000505886 SMIM1B2RUZ4 78 aa9.77□□□□□ -0.85
PDLIM3-206ENST00000505886 C10orf25Q5T742 122 aa9.77□□□□□ -0.85
PDLIM3-206ENST00000505886 VPS13BQ7Z7G8 4022 aa9.77□□□□□ -0.85
PDLIM3-206ENST00000505886 TRAV12-1A0A0B4J245 112 aa9.76□□□□□ -0.85
PDLIM3-206ENST00000505886 HSBP1O75506 76 aa9.76□□□□□ -0.85
PDLIM3-206ENST00000505886 Q6ZRP5 223 aa9.76□□□□□ -0.85
PDLIM3-206ENST00000505886 BAGE3Q86Y29 109 aa9.76□□□□□ -0.85
PDLIM3-206ENST00000505886 TOMM7Q9P0U1 55 aa9.76□□□□□ -0.85
PDLIM3-206ENST00000505886 C9orf116Q5BN46 136 aaPredicted RBP9.75□□□□□ -0.85
PDLIM3-206ENST00000505886 COX7B2Q8TF08 81 aa9.75□□□□□ -0.85
PDLIM3-206ENST00000505886 TRGC2P03986 189 aa9.74□□□□□ -0.85
PDLIM3-206ENST00000505886 C2orf82Q6UX34 121 aa9.74□□□□□ -0.85
PDLIM3-206ENST00000505886 NDUFA6P56556 154 aa9.73□□□□□ -0.85
PDLIM3-206ENST00000505886 PRR3P79522 188 aaKnown RBP9.73□□□□□ -0.85
PDLIM3-206ENST00000505886 IGLV5-39A0A0G2JS06 123 aa9.72□□□□□ -0.85
PDLIM3-206ENST00000505886 COLCA2A8K830 154 aa9.72□□□□□ -0.85
PDLIM3-206ENST00000505886 J3QL48 77 aa9.72□□□□□ -0.85
PDLIM3-206ENST00000505886 IFI27L1Q96BM0 104 aa9.72□□□□□ -0.85
PDLIM3-206ENST00000505886 A0A1W2PNN7 141 aa9.71□□□□□ -0.86
PDLIM3-206ENST00000505886 PMCHL1Q16048 86 aa9.71□□□□□ -0.86
PDLIM3-206ENST00000505886 GAGE2EQ4V326 116 aa9.7□□□□□ -0.86
PDLIM3-206ENST00000505886 GAGE2DQ9UEU5 116 aa9.7□□□□□ -0.86
PDLIM3-206ENST00000505886 ZNF22P17026 224 aaPredicted RBP9.69□□□□□ -0.86
PDLIM3-206ENST00000505886 COX17Q14061 63 aa9.69□□□□□ -0.86
PDLIM3-206ENST00000505886 SPINK6Q6UWN8 80 aa9.69□□□□□ -0.86
PDLIM3-206ENST00000505886 HSPB8Q9UJY1 196 aa9.69□□□□□ -0.86
PDLIM3-206ENST00000505886 CHTOPQ9Y3Y2 248 aaKnown RBP9.69□□□□□ -0.86
PDLIM3-206ENST00000505886 DMBT1Q9UGM3 2413 aaPredicted RBP9.68□□□□□ -0.86
PDLIM3-206ENST00000505886 FLG2Q5D862 2391 aaPredicted RBP9.68□□□□□ -0.86
PDLIM3-206ENST00000505886 LEPROTL1O95214 131 aa9.68□□□□□ -0.86
PDLIM3-206ENST00000505886 SPINK8P0C7L1 97 aa9.68□□□□□ -0.86
PDLIM3-206ENST00000505886 LBHQ53QV2 105 aaPredicted RBP9.67□□□□□ -0.86
PDLIM3-206ENST00000505886 TMEM170BQ5T4T1 132 aa9.67□□□□□ -0.86
PDLIM3-206ENST00000505886 TP73-AS1Q9UF72 201 aa9.67□□□□□ -0.86
PDLIM3-206ENST00000505886 C11orf86A6NJI1 115 aa9.65□□□□□ -0.86
PDLIM3-206ENST00000505886 M0QXV9 152 aa9.65□□□□□ -0.86
PDLIM3-206ENST00000505886 SERF1AO75920 110 aa9.65□□□□□ -0.86
PDLIM3-206ENST00000505886 REG3GQ6UW15 175 aa9.65□□□□□ -0.86
PDLIM3-206ENST00000505886 PLA2G2DQ9UNK4 145 aa9.65□□□□□ -0.86
PDLIM3-206ENST00000505886 MYCBP2O75592 4640 aa9.65□□□□□ -0.86
PDLIM3-206ENST00000505886 LINC00587B1AMM8 73 aa9.64□□□□□ -0.87
PDLIM3-206ENST00000505886 PLNP26678 52 aa9.64□□□□□ -0.87
PDLIM3-206ENST00000505886 C9orf129Q5T035 196 aaKnown RBP9.64□□□□□ -0.87
PDLIM3-206ENST00000505886 HNRNPA3P51991 378 aaKnown RBP9.63□□□□□ -0.87
PDLIM3-206ENST00000505886 SRSF9Q13242 221 aaKnown RBP eCLIP9.63□□□□□ -0.87
PDLIM3-206ENST00000505886 FAM19A5Q7Z5A7 132 aaPredicted RBP9.63□□□□□ -0.87
PDLIM3-206ENST00000505886 FAM19A2Q8N3H0 131 aa9.63□□□□□ -0.87
PDLIM3-206ENST00000505886 PSORS1C2Q9UIG4 136 aa9.63□□□□□ -0.87
PDLIM3-206ENST00000505886 TMEM223A0PJW6 202 aa9.61□□□□□ -0.87
PDLIM3-206ENST00000505886 FAM168BA1KXE4 195 aa9.61□□□□□ -0.87
PDLIM3-206ENST00000505886 UBE2BP63146 152 aa9.61□□□□□ -0.87
PDLIM3-206ENST00000505886 PHF5AQ7RTV0 110 aaKnown RBP9.61□□□□□ -0.87
PDLIM3-206ENST00000505886 IGLV5-37A0A075B6J1 123 aa9.6□□□□□ -0.87
PDLIM3-206ENST00000505886 NUPR1O60356 82 aa9.6□□□□□ -0.87
PDLIM3-206ENST00000505886 LINC00310P59036 64 aa9.6□□□□□ -0.87
PDLIM3-206ENST00000505886 HERV-K104P63124 156 aa9.6□□□□□ -0.87
PDLIM3-206ENST00000505886 ERG28Q9UKR5 140 aa9.6□□□□□ -0.87
PDLIM3-206ENST00000505886 C1orf137Q5JT78 98 aa9.59□□□□□ -0.87
PDLIM3-206ENST00000505886 SERTAD4-AS1Q5TG53 156 aa9.59□□□□□ -0.87
PDLIM3-206ENST00000505886 ZNF625Q96I27 306 aaPredicted RBP9.59□□□□□ -0.87
PDLIM3-206ENST00000505886 MAP1LC3CQ9BXW4 147 aa9.59□□□□□ -0.87
PDLIM3-206ENST00000505886 XAGE1AQ9HD64 81 aa9.59□□□□□ -0.87
PDLIM3-206ENST00000505886 C22orf24Q9Y442 160 aa9.59□□□□□ -0.87
PDLIM3-206ENST00000505886 HIST1H2BKO60814 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BJP06899 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BOP23527 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BBP33778 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BDP58876 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BCP62807 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST2H2BEQ16778 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 MRPL55Q7Z7F7 128 aaKnown RBP9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 KRTAP7-1Q8IUC3 87 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BHQ93079 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 DIRC1Q969H9 104 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 LINC01600Q96MT4 127 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BNQ99877 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 HIST1H2BMQ99879 126 aa9.58□□□□□ -0.88
PDLIM3-206ENST00000505886 IGLV7-43P04211 117 aa9.57□□□□□ -0.88
PDLIM3-206ENST00000505886 RPL24P83731 157 aaKnown RBP9.57□□□□□ -0.88
PDLIM3-206ENST00000505886 DPM2O94777 84 aa9.56□□□□□ -0.88
PDLIM3-206ENST00000505886 S100A1P23297 94 aa9.56□□□□□ -0.88
PDLIM3-206ENST00000505886 HERVK_113P61574 105 aa9.56□□□□□ -0.88
PDLIM3-206ENST00000505886 NMUP48645 174 aa9.55□□□□□ -0.88
PDLIM3-206ENST00000505886 COA6Q5JTJ3 125 aaKnown RBP9.55□□□□□ -0.88
PDLIM3-206ENST00000505886 NKAPP1Q8N9T2 125 aa9.55□□□□□ -0.88
PDLIM3-206ENST00000505886 MYMXA0A1B0GTQ4 84 aa9.54□□□□□ -0.88
PDLIM3-206ENST00000505886 PFN2P35080 140 aa9.54□□□□□ -0.88
PDLIM3-206ENST00000505886 PLEKHB2Q96CS7 222 aa9.54□□□□□ -0.88
PDLIM3-206ENST00000505886 IGKCP01834 107 aa9.53□□□□□ -0.88
PDLIM3-206ENST00000505886 FABP4P15090 132 aa9.53□□□□□ -0.88
PDLIM3-206ENST00000505886 AKR1D1P51857 326 aa9.53□□□□□ -0.88
PDLIM3-206ENST00000505886 SND1-IT1Q9HBX3 110 aa9.53□□□□□ -0.88
PDLIM3-206ENST00000505886 H0Y8G0 127 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms