RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 LINC00526Q96FQ7 95 aa12.85□□□□□ -0.35
SHROOM3-209ENST00000490690 LINC00474Q9P2X8 69 aa12.85□□□□□ -0.35
SHROOM3-209ENST00000490690 DNAH11Q96DT5 4516 aa12.84□□□□□ -0.35
SHROOM3-209ENST00000490690 LOC107984640A0A0U1RRK4 108 aa12.83□□□□□ -0.36
SHROOM3-209ENST00000490690 PLEKHB2Q96CS7 222 aa12.83□□□□□ -0.36
SHROOM3-209ENST00000490690 PMCHL2Q9BQD1 86 aa12.82□□□□□ -0.36
SHROOM3-209ENST00000490690 FUSP35637 526 aaKnown RBP eCLIP12.81□□□□□ -0.36
SHROOM3-209ENST00000490690 SDIM1Q6ZPB5 146 aa12.81□□□□□ -0.36
SHROOM3-209ENST00000490690 TLX1NBP0CAT3 122 aa12.8□□□□□ -0.36
SHROOM3-209ENST00000490690 UNQ6190/PRO20217Q6UXQ8 127 aa12.8□□□□□ -0.36
SHROOM3-209ENST00000490690 LINC00587B1AMM8 73 aa12.79□□□□□ -0.36
SHROOM3-209ENST00000490690 LEPROTO15243 131 aa12.79□□□□□ -0.36
SHROOM3-209ENST00000490690 KRTAP10-1P60331 282 aa12.79□□□□□ -0.36
SHROOM3-209ENST00000490690 C2orf82Q6UX34 121 aa12.79□□□□□ -0.36
SHROOM3-209ENST00000490690 PKHD1P08F94 4074 aa12.78□□□□□ -0.36
SHROOM3-209ENST00000490690 NMUP48645 174 aa12.78□□□□□ -0.36
SHROOM3-209ENST00000490690 HERV-K104P63124 156 aa12.78□□□□□ -0.36
SHROOM3-209ENST00000490690 C6orf48Q9UBA6 75 aa12.78□□□□□ -0.36
SHROOM3-209ENST00000490690 CDK2AP2O75956 126 aa12.77□□□□□ -0.37
SHROOM3-209ENST00000490690 TMA7Q9Y2S6 64 aaKnown RBP12.77□□□□□ -0.37
SHROOM3-209ENST00000490690 E9PLD3 99 aa12.76□□□□□ -0.37
SHROOM3-209ENST00000490690 NDUFC2-KCTD14E9PQ53 114 aa12.76□□□□□ -0.37
SHROOM3-209ENST00000490690 LGALS3P17931 250 aaKnown RBP12.76□□□□□ -0.37
SHROOM3-209ENST00000490690 COX17Q14061 63 aa12.76□□□□□ -0.37
SHROOM3-209ENST00000490690 LINC01620Q4KN68 170 aa12.76□□□□□ -0.37
SHROOM3-209ENST00000490690 C10orf25Q5T742 122 aa12.76□□□□□ -0.37
SHROOM3-209ENST00000490690 Q6ZSA8 131 aa12.76□□□□□ -0.37
SHROOM3-209ENST00000490690 MYMXA0A1B0GTQ4 84 aa12.75□□□□□ -0.37
SHROOM3-209ENST00000490690 RPL18AQ02543 176 aaKnown RBP12.75□□□□□ -0.37
SHROOM3-209ENST00000490690 DNAH5Q8TE73 4624 aa12.74□□□□□ -0.37
SHROOM3-209ENST00000490690 HSBP1L1C9JCN9 74 aa12.74□□□□□ -0.37
SHROOM3-209ENST00000490690 J3QQQ9 107 aa12.74□□□□□ -0.37
SHROOM3-209ENST00000490690 PTTG1IPP53801 180 aa12.73□□□□□ -0.37
SHROOM3-209ENST00000490690 CIRBPQ14011 172 aaKnown RBP12.73□□□□□ -0.37
SHROOM3-209ENST00000490690 DPH3Q96FX2 82 aa12.73□□□□□ -0.37
SHROOM3-209ENST00000490690 NDUFA12Q9UI09 145 aa12.73□□□□□ -0.37
SHROOM3-209ENST00000490690 ZNF625Q96I27 306 aaPredicted RBP12.72□□□□□ -0.37
SHROOM3-209ENST00000490690 DYNC1H1Q14204 4646 aaKnown RBP12.71□□□□□ -0.37
SHROOM3-209ENST00000490690 SCGB1D1O95968 90 aa12.71□□□□□ -0.37
SHROOM3-209ENST00000490690 GAGE2BQ13066 116 aa12.71□□□□□ -0.37
SHROOM3-209ENST00000490690 EPPK1P58107 5090 aaKnown RBP12.71□□□□□ -0.37
SHROOM3-209ENST00000490690 IGKV2-24A0A0C4DH68 120 aa12.7□□□□□ -0.38
SHROOM3-209ENST00000490690 SPACA4Q8TDM5 124 aa12.7□□□□□ -0.38
SHROOM3-209ENST00000490690 ERG28Q9UKR5 140 aa12.7□□□□□ -0.38
SHROOM3-209ENST00000490690 LRP1BQ9NZR2 4599 aa12.69□□□□□ -0.38
SHROOM3-209ENST00000490690 A0A096LNI7 61 aa12.69□□□□□ -0.38
SHROOM3-209ENST00000490690 MAJINQ3KP22 176 aa12.69□□□□□ -0.38
SHROOM3-209ENST00000490690 MEIG1Q5JSS6 88 aa12.68□□□□□ -0.38
SHROOM3-209ENST00000490690 STPG4Q8N801 248 aa12.68□□□□□ -0.38
SHROOM3-209ENST00000490690 Q6ZRP5 223 aa12.67□□□□□ -0.38
SHROOM3-209ENST00000490690 GAGE2EQ4V326 116 aa12.66□□□□□ -0.38
SHROOM3-209ENST00000490690 C9orf116Q5BN46 136 aaPredicted RBP12.66□□□□□ -0.38
SHROOM3-209ENST00000490690 FAM30AQ9NZY2 134 aa12.66□□□□□ -0.38
SHROOM3-209ENST00000490690 GAGE2DQ9UEU5 116 aa12.66□□□□□ -0.38
SHROOM3-209ENST00000490690 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.66□□□□□ -0.38
SHROOM3-209ENST00000490690 ATOH7Q8N100 152 aa12.65□□□□□ -0.38
SHROOM3-209ENST00000490690 PFN2P35080 140 aa12.64□□□□□ -0.39
SHROOM3-209ENST00000490690 SCXQ7RTU7 201 aa12.64□□□□□ -0.39
SHROOM3-209ENST00000490690 PLAC8Q9NZF1 115 aa12.64□□□□□ -0.39
SHROOM3-209ENST00000490690 CHTF8P0CG12 524 aa12.63□□□□□ -0.39
SHROOM3-209ENST00000490690 LINC00158P58513 81 aa12.63□□□□□ -0.39
SHROOM3-209ENST00000490690 TSPEAR-AS2P59090 65 aa12.63□□□□□ -0.39
SHROOM3-209ENST00000490690 JOSD1Q15040 202 aaPredicted RBP12.63□□□□□ -0.39
SHROOM3-209ENST00000490690 CIRBP-AS1Q8TBR5 109 aa12.63□□□□□ -0.39
SHROOM3-209ENST00000490690 A0A087WYN8 130 aa12.62□□□□□ -0.39
SHROOM3-209ENST00000490690 XGP55808 180 aa12.62□□□□□ -0.39
SHROOM3-209ENST00000490690 ZNF815PA8K554 130 aa12.61□□□□□ -0.39
SHROOM3-209ENST00000490690 BIRC6Q9NR09 4857 aa12.6□□□□□ -0.39
SHROOM3-209ENST00000490690 ANKRD39Q53RE8 183 aa12.59□□□□□ -0.39
SHROOM3-209ENST00000490690 PANO1I0J062 215 aa12.58□□□□□ -0.4
SHROOM3-209ENST00000490690 C7orf33Q8WU49 177 aa12.58□□□□□ -0.4
SHROOM3-209ENST00000490690 IGKV2D-26A0A0A0MRZ7 120 aa12.57□□□□□ -0.4
SHROOM3-209ENST00000490690 TIMM17BO60830 172 aa12.57□□□□□ -0.4
SHROOM3-209ENST00000490690 SMIM13P0DJ93 91 aa12.57□□□□□ -0.4
SHROOM3-209ENST00000490690 RPL24P83731 157 aaKnown RBP12.57□□□□□ -0.4
SHROOM3-209ENST00000490690 SCGB1D4Q6XE38 83 aa12.57□□□□□ -0.4
SHROOM3-209ENST00000490690 XAGE1AQ9HD64 81 aa12.57□□□□□ -0.4
SHROOM3-209ENST00000490690 PLA2G2DQ9UNK4 145 aa12.57□□□□□ -0.4
SHROOM3-209ENST00000490690 DNAH8Q96JB1 4490 aa12.56□□□□□ -0.4
SHROOM3-209ENST00000490690 A0A0J9YXY3 114 aa12.56□□□□□ -0.4
SHROOM3-209ENST00000490690 EPM2AB3EWF7 344 aa12.56□□□□□ -0.4
SHROOM3-209ENST00000490690 C9orf129Q5T035 196 aaKnown RBP12.56□□□□□ -0.4
SHROOM3-209ENST00000490690 MIEN1Q9BRT3 115 aa12.56□□□□□ -0.4
SHROOM3-209ENST00000490690 SND1-IT1Q9HBX3 110 aa12.56□□□□□ -0.4
SHROOM3-209ENST00000490690 MIR7-3HGQ8N6C7 128 aa12.55□□□□□ -0.4
SHROOM3-209ENST00000490690 COPS9Q8WXC6 57 aa12.55□□□□□ -0.4
SHROOM3-209ENST00000490690 VAMP8Q9BV40 100 aa12.55□□□□□ -0.4
SHROOM3-209ENST00000490690 TMEM238C9JI98 176 aa12.54□□□□□ -0.4
SHROOM3-209ENST00000490690 FAM229AH3BQW9 127 aa12.54□□□□□ -0.4
SHROOM3-209ENST00000490690 LBHQ53QV2 105 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-209ENST00000490690 TP73-AS1Q9UF72 201 aa12.53□□□□□ -0.4
SHROOM3-209ENST00000490690 A0A0U1RRA0 63 aa12.52□□□□□ -0.41
SHROOM3-209ENST00000490690 FAM19A5Q7Z5A7 132 aaPredicted RBP12.52□□□□□ -0.41
SHROOM3-209ENST00000490690 APOBP04114 4563 aaKnown RBP12.51□□□□□ -0.41
SHROOM3-209ENST00000490690 A0A1W2PNN7 141 aa12.51□□□□□ -0.41
SHROOM3-209ENST00000490690 Q6ZVH6 145 aa12.51□□□□□ -0.41
SHROOM3-209ENST00000490690 NKAPP1Q8N9T2 125 aa12.51□□□□□ -0.41
SHROOM3-209ENST00000490690 IGLV5-37A0A075B6J1 123 aa12.5□□□□□ -0.41
SHROOM3-209ENST00000490690 M0QXV9 152 aa12.5□□□□□ -0.41
SHROOM3-209ENST00000490690 HAMPP81172 84 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms