RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, human

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRE-209	ENST00000487428	PLAC8	Q9NZF1	115 aa		4.25	□□□□□ -1.73
PTPRE-209	ENST00000487428	FAM30A	Q9NZY2	134 aa		4.25	□□□□□ -1.73
PTPRE-209	ENST00000487428	CHTOP	Q9Y3Y2	248 aa	Known RBP	4.25	□□□□□ -1.73
PTPRE-209	ENST00000487428	RYR1	P21817	5038 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	TMEM223	A0PJW6	202 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	SYS1-DBNDD2	H3BUS1	97 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	PRSS2	P07478	247 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	PTTG1IP	P53801	180 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	COX17	Q14061	63 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	C6orf226	Q5I0X4	101 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	LINC01545	Q5VT33	79 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	PET117	Q6UWS5	81 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428		Q8N1X5	172 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	COX7B2	Q8TF08	81 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	C6orf48	Q9UBA6	75 aa		4.24	□□□□□ -1.73
PTPRE-209	ENST00000487428	NDUFC2-KCTD14	E9PQ53	114 aa		4.23	□□□□□ -1.73
PTPRE-209	ENST00000487428	FUS	P35637	526 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
PTPRE-209	ENST00000487428	CKS1B	P61024	79 aa		4.23	□□□□□ -1.73
PTPRE-209	ENST00000487428	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.23	□□□□□ -1.73
PTPRE-209	ENST00000487428	SCX	Q7RTU7	201 aa		4.23	□□□□□ -1.73
PTPRE-209	ENST00000487428	CIRBP-AS1	Q8TBR5	109 aa		4.23	□□□□□ -1.73
PTPRE-209	ENST00000487428	VPS13B	Q7Z7G8	4022 aa		4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428	HERC2	O95714	4834 aa		4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428		A0A096LNI7	61 aa		4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428	DPM2	O94777	84 aa		4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428	NDUFA6	P56556	154 aa		4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428	C10orf25	Q5T742	122 aa		4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428	LINC00526	Q96FQ7	95 aa		4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428	ZNF625	Q96I27	306 aa	Predicted RBP	4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.22	□□□□□ -1.73
PTPRE-209	ENST00000487428		A0A087WYN8	130 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	C5orf52	A6NGY3	159 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	LINC00587	B1AMM8	73 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	IGKC	P01834	107 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	SPINK8	P0C7L1	97 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	FABP4	P15090	132 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	NMU	P48645	174 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	HERV-K104	P63124	156 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	LINC01620	Q4KN68	170 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	TMEM170B	Q5T4T1	132 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428		Q6ZRP5	223 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	HIST3H2BB	Q8N257	126 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428	PLA2G2D	Q9UNK4	145 aa		4.21	□□□□□ -1.74
PTPRE-209	ENST00000487428		E9PLD3	99 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	PANO1	I0J062	215 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	C3orf79	P0CE67	100 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	HERVK_113	P61574	105 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	SNRPE	P62304	92 aa	Known RBP	4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	C2orf82	Q6UX34	121 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	PLEKHB2	Q96CS7	222 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	TOMM7	Q9P0U1	55 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	TP73-AS1	Q9UF72	201 aa		4.2	□□□□□ -1.74
PTPRE-209	ENST00000487428	IGLV5-37	A0A075B6J1	123 aa		4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	LOC107984156	A0A0G2JMH3	177 aa		4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	FAM229A	H3BQW9	127 aa		4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	LEPROT	O15243	131 aa		4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	KRTAP10-4	P60372	401 aa	Predicted RBP	4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	ARL17A	Q8IVW1	177 aa		4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	LINC00518	Q8N0U6	118 aa		4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	HIST1H2BL	Q99880	126 aa		4.19	□□□□□ -1.74
PTPRE-209	ENST00000487428	FAT1	Q14517	4588 aa		4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	C20orf202	A1L168	122 aa		4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	PLA2G1B	P04054	148 aa	Known RBP	4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	CHTF8	P0CG12	524 aa		4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	MAJIN	Q3KP22	176 aa		4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	STPG4	Q8N801	248 aa		4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	PPDPF	Q9H3Y8	114 aa		4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	ERG28	Q9UKR5	140 aa		4.18	□□□□□ -1.74
PTPRE-209	ENST00000487428	SRRM2	Q9UQ35	2752 aa	Known RBP	4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	IGKV2-24	A0A0C4DH68	120 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	MYMX	A0A1B0GTQ4	84 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428		J3QQQ9	107 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	S100A2	P29034	98 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	RPL18A	Q02543	176 aa	Known RBP	4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	GAGE2B	Q13066	116 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	C9orf116	Q5BN46	136 aa	Predicted RBP	4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	C9orf129	Q5T035	196 aa	Known RBP	4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	LINC00528	Q8N1L1	170 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	KRTAP17-1	Q9BYP8	105 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	NDUFA12	Q9UI09	145 aa		4.17	□□□□□ -1.74
PTPRE-209	ENST00000487428	FLG2	Q5D862	2391 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPRE-209	ENST00000487428		A0A1W2PNN7	141 aa		4.16	□□□□□ -1.74
PTPRE-209	ENST00000487428	TIMM17B	O60830	172 aa		4.16	□□□□□ -1.74
PTPRE-209	ENST00000487428		Q5VSD8	79 aa		4.16	□□□□□ -1.74
PTPRE-209	ENST00000487428	KRTAP7-1	Q8IUC3	87 aa		4.16	□□□□□ -1.74
PTPRE-209	ENST00000487428	C7orf33	Q8WU49	177 aa		4.16	□□□□□ -1.74
PTPRE-209	ENST00000487428		H0Y8G0	127 aa		4.15	□□□□□ -1.75
PTPRE-209	ENST00000487428	TSPEAR-AS2	P59090	65 aa		4.15	□□□□□ -1.75
PTPRE-209	ENST00000487428	KRTDAP	P60985	99 aa		4.15	□□□□□ -1.75
PTPRE-209	ENST00000487428	PMCHL2	Q9BQD1	86 aa		4.15	□□□□□ -1.75
PTPRE-209	ENST00000487428	IGKV2D-26	A0A0A0MRZ7	120 aa		4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428		A0A0J9YXY3	114 aa		4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428	PCP4L1	A6NKN8	68 aa		4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428	LGALS3	P17931	250 aa	Known RBP	4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428	GAGE2E	Q4V326	116 aa		4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428	LBH	Q53QV2	105 aa	Predicted RBP	4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428		Q6ZVH6	145 aa		4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428	DPH3	Q96FX2	82 aa		4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428	SND1-IT1	Q9HBX3	110 aa		4.14	□□□□□ -1.75
PTPRE-209	ENST00000487428	GAGE2D	Q9UEU5	116 aa		4.14	□□□□□ -1.75

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