RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525		Q6ZRU5	148 aa		3.24	□□□□□ -1.89
HDAC6-223	ENST00000480525	SCX	Q7RTU7	201 aa		3.24	□□□□□ -1.89
HDAC6-223	ENST00000480525	MAP1LC3C	Q9BXW4	147 aa		3.24	□□□□□ -1.89
HDAC6-223	ENST00000480525	PPDPF	Q9H3Y8	114 aa		3.24	□□□□□ -1.89
HDAC6-223	ENST00000480525	TP73-AS1	Q9UF72	201 aa		3.24	□□□□□ -1.89
HDAC6-223	ENST00000480525	CHTOP	Q9Y3Y2	248 aa	Known RBP	3.24	□□□□□ -1.89
HDAC6-223	ENST00000480525	PCLO	Q9Y6V0	5065 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	LOC107984156	A0A0G2JMH3	177 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	TMEM223	A0PJW6	202 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	FAM229A	H3BQW9	127 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	PLA2G1B	P04054	148 aa	Known RBP	3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	NMU	P48645	174 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	SNRPE	P62304	92 aa	Known RBP	3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	HERV-K104	P63124	156 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	HIGD2B	Q4VC39	106 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	C6orf226	Q5I0X4	101 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	LINC01545	Q5VT33	79 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	ARL17A	Q8IVW1	177 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	CIRBP-AS1	Q8TBR5	109 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	COX7B2	Q8TF08	81 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	C6orf48	Q9UBA6	75 aa		3.23	□□□□□ -1.89
HDAC6-223	ENST00000480525	IGLV5-37	A0A075B6J1	123 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525		A0A087WYN8	130 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525		A0A096LNI7	61 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	SYS1-DBNDD2	H3BUS1	97 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	SCO1	O75880	301 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	DPM2	O94777	84 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	PMCHL1	Q16048	86 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	FAM19A2	Q8N3H0	131 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	PLEKHB2	Q96CS7	222 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	ZNF625	Q96I27	306 aa	Predicted RBP	3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	FAM30A	Q9NZY2	134 aa		3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	SRRM2	Q9UQ35	2752 aa	Known RBP	3.22	□□□□□ -1.89
HDAC6-223	ENST00000480525	C20orf202	A1L168	122 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	NUPR1	O60356	82 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	IGKC	P01834	107 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	KRTAP10-4	P60372	401 aa	Predicted RBP	3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	HERVK_113	P61574	105 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	TMEM170B	Q5T4T1	132 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	ZC2HC1B	Q5TFG8	222 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	UNQ6190/PRO20217	Q6UXQ8	127 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525		Q6ZRP5	223 aa		3.21	□□□□□ -1.9
HDAC6-223	ENST00000480525	MYMX	A0A1B0GTQ4	84 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525		E9PLD3	99 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525	LEPROT	O15243	131 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525	C10orf25	Q5T742	122 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525	LINC00528	Q8N1L1	170 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525	C7orf33	Q8WU49	177 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525	LINC00526	Q96FQ7	95 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525	FAT1	Q14517	4588 aa		3.2	□□□□□ -1.9
HDAC6-223	ENST00000480525	IGKV2D-26	A0A0A0MRZ7	120 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525		A0A0J9YXY3	114 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	C5orf52	A6NGY3	159 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	PANO1	I0J062	215 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	TIMM17B	O60830	172 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	S100A6	P06703	90 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	SPINK8	P0C7L1	97 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	NDUFA6	P56556	154 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	C9orf116	Q5BN46	136 aa	Predicted RBP	3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525		Q5VSD8	79 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	C2orf82	Q6UX34	121 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	HIST3H2BB	Q8N257	126 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	STPG4	Q8N801	248 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	TOMM7	Q9P0U1	55 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	ERG28	Q9UKR5	140 aa		3.19	□□□□□ -1.9
HDAC6-223	ENST00000480525	DMBT1	Q9UGM3	2413 aa	Predicted RBP	3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	ABCA13	Q86UQ4	5058 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525		J3QQQ9	107 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	NDUFC2	O95298	119 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	C3orf79	P0CE67	100 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	FABP4	P15090	132 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	CTAG1A	P78358	180 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	RPL24	P83731	157 aa	Known RBP	3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	RPL18A	Q02543	176 aa	Known RBP	3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	MAJIN	Q3KP22	176 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	LINC01620	Q4KN68	170 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	LBH	Q53QV2	105 aa	Predicted RBP	3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	C9orf129	Q5T035	196 aa	Known RBP	3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525		Q6ZVH6	145 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	HIST1H2BL	Q99880	126 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	NDUFA12	Q9UI09	145 aa		3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	FLG2	Q5D862	2391 aa	Predicted RBP	3.18	□□□□□ -1.9
HDAC6-223	ENST00000480525	IGKV2-24	A0A0C4DH68	120 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	TRBV10-2	A0A0K0K1G8	114 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	LOC105371267	A0A1B0GV96	52 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	OXT	P01178	125 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	CHTF8	P0CG12	524 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	S100A2	P29034	98 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	FUS	P35637	526 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	RPL37A	P61513	92 aa	Known RBP	3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	PRR3	P79522	188 aa	Known RBP	3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	GAGE2B	Q13066	116 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	MEIG1	Q5JSS6	88 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	SPINK6	Q6UWN8	80 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	COPS9	Q8WXC6	57 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525	CBY1	Q9Y3M2	126 aa		3.17	□□□□□ -1.9
HDAC6-223	ENST00000480525		A0A1W2PNN7	141 aa		3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	KRTAP29-1	A8MX34	341 aa	Predicted RBP	3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525		H0Y9J4	135 aa		3.16	□□□□□ -1.9

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