RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 SMIM1B2RUZ4 78 aa12.05□□□□□ -0.48
PDLIM7-204ENST00000393546 PLA2G1BP04054 148 aaKnown RBP12.05□□□□□ -0.48
PDLIM7-204ENST00000393546 PTTG1IPP53801 180 aa12.05□□□□□ -0.48
PDLIM7-204ENST00000393546 C2orf82Q6UX34 121 aa12.05□□□□□ -0.48
PDLIM7-204ENST00000393546 STPG4Q8N801 248 aa12.05□□□□□ -0.48
PDLIM7-204ENST00000393546 C6orf48Q9UBA6 75 aa12.05□□□□□ -0.48
PDLIM7-204ENST00000393546 VPS13BQ7Z7G8 4022 aa12.05□□□□□ -0.48
PDLIM7-204ENST00000393546 SPINK8P0C7L1 97 aa12.04□□□□□ -0.48
PDLIM7-204ENST00000393546 LINC00310P59036 64 aa12.04□□□□□ -0.48
PDLIM7-204ENST00000393546 RPL18AQ02543 176 aaKnown RBP12.04□□□□□ -0.48
PDLIM7-204ENST00000393546 CHTOPQ9Y3Y2 248 aaKnown RBP12.04□□□□□ -0.48
PDLIM7-204ENST00000393546 TRAV12-1A0A0B4J245 112 aa12.03□□□□□ -0.48
PDLIM7-204ENST00000393546 LEPROTL1O95214 131 aa12.03□□□□□ -0.48
PDLIM7-204ENST00000393546 NUPR1O60356 82 aa12.02□□□□□ -0.49
PDLIM7-204ENST00000393546 TLX1NBP0CAT3 122 aa12.02□□□□□ -0.49
PDLIM7-204ENST00000393546 COX7B2Q8TF08 81 aa12.02□□□□□ -0.49
PDLIM7-204ENST00000393546 ABCA13Q86UQ4 5058 aa12.02□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BKO60814 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BJP06899 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 ZNF22P17026 224 aaPredicted RBP12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BOP23527 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BBP33778 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 CXCL5P42830 114 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BDP58876 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BCP62807 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST2H2BEQ16778 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BHQ93079 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BNQ99877 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 HIST1H2BMQ99879 126 aa12.01□□□□□ -0.49
PDLIM7-204ENST00000393546 C11orf86A6NJI1 115 aa12□□□□□ -0.49
PDLIM7-204ENST00000393546 HSPB8Q9UJY1 196 aa12□□□□□ -0.49
PDLIM7-204ENST00000393546 F8VRH5 84 aa11.99□□□□□ -0.49
PDLIM7-204ENST00000393546 ATP6V1G1O75348 118 aa11.99□□□□□ -0.49
PDLIM7-204ENST00000393546 INAFM2P0DMQ5 153 aa11.99□□□□□ -0.49
PDLIM7-204ENST00000393546 TMEM170BQ5T4T1 132 aa11.99□□□□□ -0.49
PDLIM7-204ENST00000393546 FABP4P15090 132 aa11.98□□□□□ -0.49
PDLIM7-204ENST00000393546 C9orf116Q5BN46 136 aaPredicted RBP11.98□□□□□ -0.49
PDLIM7-204ENST00000393546 Q6ZRP5 223 aa11.98□□□□□ -0.49
PDLIM7-204ENST00000393546 NDUFC2-KCTD14E9PQ53 114 aa11.97□□□□□ -0.49
PDLIM7-204ENST00000393546 RPL37AP61513 92 aaKnown RBP11.97□□□□□ -0.49
PDLIM7-204ENST00000393546 GAGE2EQ4V326 116 aa11.97□□□□□ -0.49
PDLIM7-204ENST00000393546 C7orf33Q8WU49 177 aa11.97□□□□□ -0.49
PDLIM7-204ENST00000393546 GAGE2DQ9UEU5 116 aa11.97□□□□□ -0.49
PDLIM7-204ENST00000393546 SRRM2Q9UQ35 2752 aaKnown RBP11.97□□□□□ -0.49
PDLIM7-204ENST00000393546 IGLV5-39A0A0G2JS06 123 aa11.96□□□□□ -0.49
PDLIM7-204ENST00000393546 H0Y8G0 127 aa11.96□□□□□ -0.49
PDLIM7-204ENST00000393546 A0A1W2PNN7 141 aa11.95□□□□□ -0.5
PDLIM7-204ENST00000393546 ODF1Q14990 250 aa11.93□□□□□ -0.5
PDLIM7-204ENST00000393546 MAP1LC3CQ9BXW4 147 aa11.92□□□□□ -0.5
PDLIM7-204ENST00000393546 KRTAP10-4P60372 401 aaPredicted RBP11.91□□□□□ -0.5
PDLIM7-204ENST00000393546 TMEM223A0PJW6 202 aa11.9□□□□□ -0.5
PDLIM7-204ENST00000393546 COA6Q5JTJ3 125 aaKnown RBP11.88□□□□□ -0.51
PDLIM7-204ENST00000393546 FAM168BA1KXE4 195 aa11.87□□□□□ -0.51
PDLIM7-204ENST00000393546 PLNP26678 52 aa11.87□□□□□ -0.51
PDLIM7-204ENST00000393546 C9orf129Q5T035 196 aaKnown RBP11.87□□□□□ -0.51
PDLIM7-204ENST00000393546 SFTA2Q6UW10 78 aa11.87□□□□□ -0.51
PDLIM7-204ENST00000393546 DPM2O94777 84 aa11.86□□□□□ -0.51
PDLIM7-204ENST00000393546 FAM19A5Q7Z5A7 132 aaPredicted RBP11.86□□□□□ -0.51
PDLIM7-204ENST00000393546 PHF5AQ7RTV0 110 aaKnown RBP11.85□□□□□ -0.51
PDLIM7-204ENST00000393546 PMCHL2Q9BQD1 86 aa11.85□□□□□ -0.51
PDLIM7-204ENST00000393546 XAGE1AQ9HD64 81 aa11.85□□□□□ -0.51
PDLIM7-204ENST00000393546 IGKCP01834 107 aa11.84□□□□□ -0.51
PDLIM7-204ENST00000393546 SYS1-DBNDD2H3BUS1 97 aa11.83□□□□□ -0.52
PDLIM7-204ENST00000393546 PFN2P35080 140 aa11.83□□□□□ -0.52
PDLIM7-204ENST00000393546 ZNF625Q96I27 306 aaPredicted RBP11.83□□□□□ -0.52
PDLIM7-204ENST00000393546 ERG28Q9UKR5 140 aa11.83□□□□□ -0.52
PDLIM7-204ENST00000393546 FLG2Q5D862 2391 aaPredicted RBP11.83□□□□□ -0.52
PDLIM7-204ENST00000393546 COX17Q14061 63 aa11.82□□□□□ -0.52
PDLIM7-204ENST00000393546 HERVK_113P61574 105 aa11.81□□□□□ -0.52
PDLIM7-204ENST00000393546 PRR3P79522 188 aaKnown RBP11.81□□□□□ -0.52
PDLIM7-204ENST00000393546 KRTAP7-1Q8IUC3 87 aa11.81□□□□□ -0.52
PDLIM7-204ENST00000393546 M0QXV9 152 aa11.8□□□□□ -0.52
PDLIM7-204ENST00000393546 PET117Q6UWS5 81 aa11.8□□□□□ -0.52
PDLIM7-204ENST00000393546 LEPROTO15243 131 aa11.79□□□□□ -0.52
PDLIM7-204ENST00000393546 SERTAD4-AS1Q5TG53 156 aa11.79□□□□□ -0.52
PDLIM7-204ENST00000393546 PLEKHB2Q96CS7 222 aa11.79□□□□□ -0.52
PDLIM7-204ENST00000393546 HNRNPA3P51991 378 aaKnown RBP11.78□□□□□ -0.52
PDLIM7-204ENST00000393546 C22orf24Q9Y442 160 aa11.78□□□□□ -0.52
PDLIM7-204ENST00000393546 PKHD1L1Q86WI1 4243 aa11.77□□□□□ -0.52
PDLIM7-204ENST00000393546 HERV-K104P63124 156 aa11.77□□□□□ -0.53
PDLIM7-204ENST00000393546 UBE2BP63146 152 aa11.77□□□□□ -0.53
PDLIM7-204ENST00000393546 LBHQ53QV2 105 aaPredicted RBP11.77□□□□□ -0.53
PDLIM7-204ENST00000393546 NDUFA12Q9UI09 145 aa11.77□□□□□ -0.53
PDLIM7-204ENST00000393546 PSORS1C2Q9UIG4 136 aa11.77□□□□□ -0.53
PDLIM7-204ENST00000393546 PLA2G2DQ9UNK4 145 aa11.77□□□□□ -0.53
PDLIM7-204ENST00000393546 MYMXA0A1B0GTQ4 84 aa11.76□□□□□ -0.53
PDLIM7-204ENST00000393546 C3orf79P0CE67 100 aa11.76□□□□□ -0.53
PDLIM7-204ENST00000393546 LINC00158P58513 81 aa11.76□□□□□ -0.53
PDLIM7-204ENST00000393546 LINC01545Q5VT33 79 aa11.76□□□□□ -0.53
PDLIM7-204ENST00000393546 KRTDAPP60985 99 aa11.75□□□□□ -0.53
PDLIM7-204ENST00000393546 SND1-IT1Q9HBX3 110 aa11.75□□□□□ -0.53
PDLIM7-204ENST00000393546 LINC00587B1AMM8 73 aa11.74□□□□□ -0.53
PDLIM7-204ENST00000393546 J3QQQ9 107 aa11.74□□□□□ -0.53
PDLIM7-204ENST00000393546 MEIG1Q5JSS6 88 aa11.74□□□□□ -0.53
PDLIM7-204ENST00000393546 TP73-AS1Q9UF72 201 aa11.74□□□□□ -0.53
PDLIM7-204ENST00000393546 C1orf137Q5JT78 98 aa11.73□□□□□ -0.53
PDLIM7-204ENST00000393546 A0A0U1RRA0 63 aa11.72□□□□□ -0.53
PDLIM7-204ENST00000393546 S100A6P06703 90 aa11.72□□□□□ -0.53
PDLIM7-204ENST00000393546 SMIM13P0DJ93 91 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms