RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 C9orf116Q5BN46 136 aaPredicted RBP11.03□□□□□ -0.64
PCF11-206ENST00000533018 SMIM2Q9BVW6 85 aa11.03□□□□□ -0.64
PCF11-206ENST00000533018 A0A1B0GVG6 124 aa11.02□□□□□ -0.65
PCF11-206ENST00000533018 RPL32P62910 135 aaKnown RBP11.02□□□□□ -0.65
PCF11-206ENST00000533018 SRSF9Q13242 221 aaKnown RBP eCLIP11.02□□□□□ -0.654e-6■■□□□ 11.4
PCF11-206ENST00000533018 ORAOV1Q8WV07 137 aa11.02□□□□□ -0.65
PCF11-206ENST00000533018 MT-ND6P03923 174 aa11.01□□□□□ -0.65
PCF11-206ENST00000533018 OR10D4PQ8NGN7 298 aa11.01□□□□□ -0.65
PCF11-206ENST00000533018 SPANXA1Q9NS26 97 aa11.01□□□□□ -0.65
PCF11-206ENST00000533018 IFITM10A6NMD0 228 aa11□□□□□ -0.65
PCF11-206ENST00000533018 NPYP01303 97 aa11□□□□□ -0.65
PCF11-206ENST00000533018 SMDT1Q9H4I9 107 aa11□□□□□ -0.65
PCF11-206ENST00000533018 RAB5AP20339 215 aa10.99□□□□□ -0.65
PCF11-206ENST00000533018 PHF5AQ7RTV0 110 aaKnown RBP10.99□□□□□ -0.65
PCF11-206ENST00000533018 NDUFA1O15239 70 aa10.98□□□□□ -0.65
PCF11-206ENST00000533018 PPBPP02775 128 aa10.98□□□□□ -0.65
PCF11-206ENST00000533018 KRTAP10-8P60410 259 aa10.98□□□□□ -0.65
PCF11-206ENST00000533018 RNF151Q2KHN1 245 aa10.98□□□□□ -0.65
PCF11-206ENST00000533018 PSORS1C2Q9UIG4 136 aa10.98□□□□□ -0.65
PCF11-206ENST00000533018 IGHV3OR16-9A0A0B4J2B5 98 aa10.97□□□□□ -0.65
PCF11-206ENST00000533018 A0A1B0GXF2 115 aa10.97□□□□□ -0.65
PCF11-206ENST00000533018 MRPS36P82909 103 aaKnown RBP10.97□□□□□ -0.65
PCF11-206ENST00000533018 C1orf137Q5JT78 98 aa10.97□□□□□ -0.65
PCF11-206ENST00000533018 TMEM136Q6ZRR5 245 aa10.97□□□□□ -0.65
PCF11-206ENST00000533018 ORMDL3Q8N138 153 aa10.97□□□□□ -0.65
PCF11-206ENST00000533018 FAM104AQ969W3 186 aa10.97□□□□□ -0.65
PCF11-206ENST00000533018 IMMP2LQ96T52 175 aa10.97□□□□□ -0.65
PCF11-206ENST00000533018 MRPL35Q9NZE8 188 aaKnown RBP10.97□□□□□ -0.65
PCF11-206ENST00000533018 TGIF2-C20orf24A0A0A6YYL0 155 aa10.96□□□□□ -0.65
PCF11-206ENST00000533018 IFI27P40305 119 aaPredicted RBP10.96□□□□□ -0.65
PCF11-206ENST00000533018 PRELID3AQ96N28 172 aa10.96□□□□□ -0.65
PCF11-206ENST00000533018 F8WDY8 70 aa10.95□□□□□ -0.66
PCF11-206ENST00000533018 UNQ6190/PRO20217Q6UXQ8 127 aa10.95□□□□□ -0.66
PCF11-206ENST00000533018 C10orf25Q5T742 122 aa10.94□□□□□ -0.66
PCF11-206ENST00000533018 LOC389332A0A1B0GUA5 103 aa10.93□□□□□ -0.66
PCF11-206ENST00000533018 GAGE2EQ4V326 116 aa10.93□□□□□ -0.66
PCF11-206ENST00000533018 ATP5L2Q7Z4Y8 100 aa10.93□□□□□ -0.66
PCF11-206ENST00000533018 GAGE2DQ9UEU5 116 aa10.93□□□□□ -0.66
PCF11-206ENST00000533018 A0A087WZ39 114 aa10.92□□□□□ -0.66
PCF11-206ENST00000533018 FAM168BA1KXE4 195 aa10.92□□□□□ -0.66
PCF11-206ENST00000533018 FAM19A5Q7Z5A7 132 aaPredicted RBP10.92□□□□□ -0.66
PCF11-206ENST00000533018 TMEM141Q96I45 108 aa10.91□□□□□ -0.66
PCF11-206ENST00000533018 C6orf48Q9UBA6 75 aa10.91□□□□□ -0.66
PCF11-206ENST00000533018 IGLV4-3A0A075B6K6 122 aa10.9□□□□□ -0.66
PCF11-206ENST00000533018 LINC00242Q5T6M2 205 aa10.9□□□□□ -0.66
PCF11-206ENST00000533018 PYGO1Q9Y3Y4 419 aa10.9□□□□□ -0.66
PCF11-206ENST00000533018 TLX1NBP0CAT3 122 aa10.89□□□□□ -0.67
PCF11-206ENST00000533018 TEX43Q6ZNM6 134 aa10.89□□□□□ -0.67
PCF11-206ENST00000533018 C2orf88Q9BSF0 95 aa10.89□□□□□ -0.67
PCF11-206ENST00000533018 MAP1LC3AQ9H492 121 aa10.89□□□□□ -0.67
PCF11-206ENST00000533018 IGLV7-43P04211 117 aa10.88□□□□□ -0.67
PCF11-206ENST00000533018 UBE2BP63146 152 aa10.87□□□□□ -0.67
PCF11-206ENST00000533018 C2orf82Q6UX34 121 aa10.87□□□□□ -0.67
PCF11-206ENST00000533018 Q6ZN92 141 aa10.87□□□□□ -0.67
PCF11-206ENST00000533018 DIRC1Q969H9 104 aa10.87□□□□□ -0.67
PCF11-206ENST00000533018 PACRGQ96M98 296 aaPredicted RBP10.87□□□□□ -0.67
PCF11-206ENST00000533018 LAMTOR2Q9Y2Q5 125 aa10.87□□□□□ -0.67
PCF11-206ENST00000533018 MT-ND4LP03901 98 aa10.86□□□□□ -0.67
PCF11-206ENST00000533018 KIAA0087Q14695 138 aa10.86□□□□□ -0.67
PCF11-206ENST00000533018 VCX2Q9H322 139 aa10.86□□□□□ -0.67
PCF11-206ENST00000533018 CYSLTR1Q9Y271 337 aa10.86□□□□□ -0.67
PCF11-206ENST00000533018 TRBV30A0A0K0K1B3 111 aa10.85□□□□□ -0.67
PCF11-206ENST00000533018 PRSS47A8MTI9 375 aa10.85□□□□□ -0.67
PCF11-206ENST00000533018 PRSS2P07478 247 aa10.85□□□□□ -0.67
PCF11-206ENST00000533018 ZC2HC1BQ5TFG8 222 aa10.85□□□□□ -0.67
PCF11-206ENST00000533018 C2orf66Q6UXQ4 117 aa10.85□□□□□ -0.67
PCF11-206ENST00000533018 KRTAP11-1Q8IUC1 163 aa10.85□□□□□ -0.67
PCF11-206ENST00000533018 Q8N8P6 123 aa10.85□□□□□ -0.67
PCF11-206ENST00000533018 M0QXV9 152 aa10.84□□□□□ -0.67
PCF11-206ENST00000533018 UBE2D1P51668 147 aa10.84□□□□□ -0.67
PCF11-206ENST00000533018 PNRC1Q12796 327 aaPredicted RBP10.84□□□□□ -0.67
PCF11-206ENST00000533018 ANAPC16Q96DE5 110 aa10.84□□□□□ -0.67
PCF11-206ENST00000533018 TOMM7Q9P0U1 55 aa10.84□□□□□ -0.67
PCF11-206ENST00000533018 NDUFC2-KCTD14E9PQ53 114 aa10.83□□□□□ -0.68
PCF11-206ENST00000533018 ORMDL2Q53FV1 153 aa10.83□□□□□ -0.68
PCF11-206ENST00000533018 PRR26Q8N8Z3 221 aa10.83□□□□□ -0.68
PCF11-206ENST00000533018 H0Y9J4 135 aa10.82□□□□□ -0.68
PCF11-206ENST00000533018 CKS1BP61024 79 aa10.82□□□□□ -0.68
PCF11-206ENST00000533018 RAB14P61106 215 aa10.82□□□□□ -0.68
PCF11-206ENST00000533018 C6orf226Q5I0X4 101 aa10.81□□□□□ -0.68
PCF11-206ENST00000533018 LINC01561Q8N1V8 128 aa10.81□□□□□ -0.68
PCF11-206ENST00000533018 C9orf129Q5T035 196 aaKnown RBP10.8□□□□□ -0.68
PCF11-206ENST00000533018 KRTAP7-1Q8IUC3 87 aa10.8□□□□□ -0.68
PCF11-206ENST00000533018 AMELXQ99217 191 aa10.8□□□□□ -0.68
PCF11-206ENST00000533018 CTDSP1Q9GZU7 261 aa10.8□□□□□ -0.68
PCF11-206ENST00000533018 LPAP08519 4548 aa10.8□□□□□ -0.68
PCF11-206ENST00000533018 LINC00173Q6ZV60 143 aa10.79□□□□□ -0.68
PCF11-206ENST00000533018 ALKBH7Q9BT30 221 aaPredicted RBP10.79□□□□□ -0.68
PCF11-206ENST00000533018 K7EMI3 77 aa10.78□□□□□ -0.68
PCF11-206ENST00000533018 LINC00469Q8N7U9 141 aa10.78□□□□□ -0.68
PCF11-206ENST00000533018 NXT2Q9NPJ8 142 aaKnown RBP10.78□□□□□ -0.68
PCF11-206ENST00000533018 IGIPA6NJ69 53 aa10.77□□□□□ -0.69
PCF11-206ENST00000533018 PAPPA-AS1Q5QFB9 102 aa10.77□□□□□ -0.69
PCF11-206ENST00000533018 NPSP0C0P6 89 aa10.76□□□□□ -0.69
PCF11-206ENST00000533018 G0S2P27469 103 aa10.76□□□□□ -0.69
PCF11-206ENST00000533018 HERVK_113P63121 156 aa10.76□□□□□ -0.69
PCF11-206ENST00000533018 SEC11AP67812 179 aa10.76□□□□□ -0.69
PCF11-206ENST00000533018 Q8IZM0 81 aa10.76□□□□□ -0.69
PCF11-206ENST00000533018 GEMIN7Q9H840 131 aaKnown RBP10.76□□□□□ -0.69
PCF11-206ENST00000533018 IGLV1-50A0A075B6I6 118 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms