RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 FAM104AQ969W3 186 aa9.9□□□□□ -0.82
HDAC4-213ENST00000496347 CAMK2N2Q96S95 79 aa9.9□□□□□ -0.82
HDAC4-213ENST00000496347 MAP1LC3AQ9H492 121 aa9.9□□□□□ -0.82
HDAC4-213ENST00000496347 LOC107984640A0A0U1RRK4 108 aa9.89□□□□□ -0.83
HDAC4-213ENST00000496347 PTTG1IPP53801 180 aa9.89□□□□□ -0.83
HDAC4-213ENST00000496347 SPAG11BQ08648 103 aa9.89□□□□□ -0.83
HDAC4-213ENST00000496347 C5orf38Q86SI9 138 aa9.89□□□□□ -0.83
HDAC4-213ENST00000496347 IMMP2LQ96T52 175 aa9.89□□□□□ -0.83
HDAC4-213ENST00000496347 PYGO1Q9Y3Y4 419 aa9.89□□□□□ -0.83
HDAC4-213ENST00000496347 IGHV3OR16-9A0A0B4J2B5 98 aa9.88□□□□□ -0.83
HDAC4-213ENST00000496347 PRR3P79522 188 aaKnown RBP9.88□□□□□ -0.83
HDAC4-213ENST00000496347 F8WDY8 70 aa9.87□□□□□ -0.83
HDAC4-213ENST00000496347 K7EMI3 77 aa9.87□□□□□ -0.83
HDAC4-213ENST00000496347 TGIF2-C20orf24A0A0A6YYL0 155 aa9.86□□□□□ -0.83
HDAC4-213ENST00000496347 ADCYAP1P18509 176 aa9.86□□□□□ -0.83
HDAC4-213ENST00000496347 Q8N8P6 123 aa9.86□□□□□ -0.83
HDAC4-213ENST00000496347 ORAOV1Q8WV07 137 aa9.86□□□□□ -0.83
HDAC4-213ENST00000496347 TMEM141Q96I45 108 aa9.86□□□□□ -0.83
HDAC4-213ENST00000496347 OPRPNQ99935 248 aaPredicted RBP9.86□□□□□ -0.83
HDAC4-213ENST00000496347 IGLV4-3A0A075B6K6 122 aa9.85□□□□□ -0.83
HDAC4-213ENST00000496347 NPSP0C0P6 89 aa9.85□□□□□ -0.83
HDAC4-213ENST00000496347 RNF151Q2KHN1 245 aa9.85□□□□□ -0.83
HDAC4-213ENST00000496347 ORMDL2Q53FV1 153 aa9.85□□□□□ -0.83
HDAC4-213ENST00000496347 SERTAD4-AS1Q5TG53 156 aa9.85□□□□□ -0.83
HDAC4-213ENST00000496347 CYSLTR1Q9Y271 337 aa9.85□□□□□ -0.83
HDAC4-213ENST00000496347 TRAV9-1A0A075B6T8 112 aa9.84□□□□□ -0.83
HDAC4-213ENST00000496347 LOC389332A0A1B0GUA5 103 aa9.84□□□□□ -0.83
HDAC4-213ENST00000496347 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.84□□□□□ -0.83
HDAC4-213ENST00000496347 TEX43Q6ZNM6 134 aa9.84□□□□□ -0.83
HDAC4-213ENST00000496347 C2orf88Q9BSF0 95 aa9.84□□□□□ -0.83
HDAC4-213ENST00000496347 CTDSP1Q9GZU7 261 aa9.84□□□□□ -0.83
HDAC4-213ENST00000496347 NXT2Q9NPJ8 142 aaKnown RBP9.84□□□□□ -0.83
HDAC4-213ENST00000496347 MRPL35Q9NZE8 188 aaKnown RBP9.84□□□□□ -0.83
HDAC4-213ENST00000496347 HMCN2Q8NDA2 5059 aa9.84□□□□□ -0.83
HDAC4-213ENST00000496347 TMEM218A2RU14 115 aa9.83□□□□□ -0.84
HDAC4-213ENST00000496347 NDUFA1O15239 70 aa9.83□□□□□ -0.84
HDAC4-213ENST00000496347 GAGE2BQ13066 116 aa9.83□□□□□ -0.84
HDAC4-213ENST00000496347 C2orf66Q6UXQ4 117 aa9.83□□□□□ -0.84
HDAC4-213ENST00000496347 Q6ZN92 141 aa9.83□□□□□ -0.84
HDAC4-213ENST00000496347 A0A087WZ39 114 aa9.82□□□□□ -0.84
HDAC4-213ENST00000496347 RPL18AQ02543 176 aaKnown RBP9.82□□□□□ -0.84
HDAC4-213ENST00000496347 IFITM2Q01629 132 aa9.81□□□□□ -0.84
HDAC4-213ENST00000496347 LINC00242Q5T6M2 205 aa9.81□□□□□ -0.84
HDAC4-213ENST00000496347 SEC11CQ9BY50 192 aa9.81□□□□□ -0.84
HDAC4-213ENST00000496347 G0S2P27469 103 aa9.8□□□□□ -0.84
HDAC4-213ENST00000496347 UBE2D1P51668 147 aa9.8□□□□□ -0.84
HDAC4-213ENST00000496347 Q6ZRP5 223 aa9.8□□□□□ -0.84
HDAC4-213ENST00000496347 MT1HL1P0DM35 61 aa9.79□□□□□ -0.84
HDAC4-213ENST00000496347 PAPPA-AS1Q5QFB9 102 aa9.79□□□□□ -0.84
HDAC4-213ENST00000496347 LINC00173Q6ZV60 143 aa9.79□□□□□ -0.84
HDAC4-213ENST00000496347 LINC01561Q8N1V8 128 aa9.79□□□□□ -0.84
HDAC4-213ENST00000496347 AMELXQ99217 191 aa9.79□□□□□ -0.84
HDAC4-213ENST00000496347 IGIPA6NJ69 53 aa9.78□□□□□ -0.84
HDAC4-213ENST00000496347 TLX1NBP0CAT3 122 aa9.78□□□□□ -0.84
HDAC4-213ENST00000496347 S100PP25815 95 aa9.78□□□□□ -0.84
HDAC4-213ENST00000496347 C9orf116Q5BN46 136 aaPredicted RBP9.77□□□□□ -0.85
HDAC4-213ENST00000496347 COMMD7Q86VX2 200 aa9.77□□□□□ -0.85
HDAC4-213ENST00000496347 TIMM17AQ99595 171 aa9.77□□□□□ -0.85
HDAC4-213ENST00000496347 VCX2Q9H322 139 aa9.77□□□□□ -0.85
HDAC4-213ENST00000496347 TNXBP22105 4242 aa9.76□□□□□ -0.85
HDAC4-213ENST00000496347 A0A0J9YXV3 536 aa9.76□□□□□ -0.85
HDAC4-213ENST00000496347 TRBV30A0A0K0K1B3 111 aa9.76□□□□□ -0.85
HDAC4-213ENST00000496347 SPINK6Q6UWN8 80 aa9.76□□□□□ -0.85
HDAC4-213ENST00000496347 C6orf48Q9UBA6 75 aa9.76□□□□□ -0.85
HDAC4-213ENST00000496347 A0A1W2PNN7 141 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 SEC11AP67812 179 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 KIAA0087Q14695 138 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 COX19Q49B96 90 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 C10orf25Q5T742 122 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 FAM19A3Q7Z5A8 133 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 TOMM6Q96B49 74 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 GNB1LQ9BYB4 327 aa9.75□□□□□ -0.85
HDAC4-213ENST00000496347 MT-ND6P03923 174 aa9.74□□□□□ -0.85
HDAC4-213ENST00000496347 RHEBQ15382 184 aa9.74□□□□□ -0.85
HDAC4-213ENST00000496347 UNQ6190/PRO20217Q6UXQ8 127 aa9.74□□□□□ -0.85
HDAC4-213ENST00000496347 PLA2G2DQ9UNK4 145 aa9.74□□□□□ -0.85
HDAC4-213ENST00000496347 LINC01549A6NIU2 74 aa9.73□□□□□ -0.85
HDAC4-213ENST00000496347 HERVK_113P63121 156 aa9.73□□□□□ -0.85
HDAC4-213ENST00000496347 KIAA1644Q3SXP7 199 aa9.73□□□□□ -0.85
HDAC4-213ENST00000496347 REG3GQ6UW15 175 aa9.73□□□□□ -0.85
HDAC4-213ENST00000496347 C10orf91Q5T1B1 145 aa9.72□□□□□ -0.85
HDAC4-213ENST00000496347 ZC2HC1BQ5TFG8 222 aa9.72□□□□□ -0.85
HDAC4-213ENST00000496347 PACRGQ96M98 296 aaPredicted RBP9.72□□□□□ -0.85
HDAC4-213ENST00000496347 LINC01600Q96MT4 127 aa9.72□□□□□ -0.85
HDAC4-213ENST00000496347 CARHSP1Q9Y2V2 147 aaKnown RBP9.72□□□□□ -0.85
HDAC4-213ENST00000496347 LINC01546A6NGU7 62 aa9.71□□□□□ -0.86
HDAC4-213ENST00000496347 NDUFC2-KCTD14E9PQ53 114 aa9.71□□□□□ -0.86
HDAC4-213ENST00000496347 PRSS2P07478 247 aa9.71□□□□□ -0.86
HDAC4-213ENST00000496347 C2orf82Q6UX34 121 aa9.71□□□□□ -0.86
HDAC4-213ENST00000496347 ERASQ7Z444 233 aa9.71□□□□□ -0.86
HDAC4-213ENST00000496347 Q8IZM0 81 aa9.71□□□□□ -0.86
HDAC4-213ENST00000496347 SRSF9Q13242 221 aaKnown RBP eCLIP9.7□□□□□ -0.867e-6■■■■□ 20
HDAC4-213ENST00000496347 ALKBH7Q9BT30 221 aaPredicted RBP9.7□□□□□ -0.86
HDAC4-213ENST00000496347 GEMIN7Q9H840 131 aaKnown RBP9.7□□□□□ -0.86
HDAC4-213ENST00000496347 PSORS1C2Q9UIG4 136 aa9.7□□□□□ -0.86
HDAC4-213ENST00000496347 CKS1BP61024 79 aa9.69□□□□□ -0.86
HDAC4-213ENST00000496347 GAGE2EQ4V326 116 aa9.69□□□□□ -0.86
HDAC4-213ENST00000496347 PHF5AQ7RTV0 110 aaKnown RBP9.69□□□□□ -0.86
HDAC4-213ENST00000496347 SCGB3A1Q96QR1 104 aa9.69□□□□□ -0.86
HDAC4-213ENST00000496347 GAGE2DQ9UEU5 116 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms