RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 LRP1Q07954 4544 aaKnown RBP6.76□□□□□ -1.33
COL6A3-214ENST00000493608 S100A8P05109 93 aa6.75□□□□□ -1.33
COL6A3-214ENST00000493608 C5orf38Q86SI9 138 aa6.75□□□□□ -1.33
COL6A3-214ENST00000493608 OPRPNQ99935 248 aaPredicted RBP6.75□□□□□ -1.33
COL6A3-214ENST00000493608 SMIM2Q9BVW6 85 aa6.75□□□□□ -1.33
COL6A3-214ENST00000493608 CSDC2Q9Y534 153 aaKnown RBP6.75□□□□□ -1.33
COL6A3-214ENST00000493608 A0A096LNI7 61 aa6.74□□□□□ -1.33
COL6A3-214ENST00000493608 C1orf196B1AJZ1 125 aa6.74□□□□□ -1.33
COL6A3-214ENST00000493608 ZNF561-AS1K7EIQ3 104 aa6.74□□□□□ -1.33
COL6A3-214ENST00000493608 RPL32P62910 135 aaKnown RBP6.74□□□□□ -1.33
COL6A3-214ENST00000493608 TMEM136Q6ZRR5 245 aa6.74□□□□□ -1.33
COL6A3-214ENST00000493608 TMEM18Q96B42 140 aa6.74□□□□□ -1.33
COL6A3-214ENST00000493608 PKHD1L1Q86WI1 4243 aa6.74□□□□□ -1.33
COL6A3-214ENST00000493608 LOC389332A0A1B0GUA5 103 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 MALP21145 153 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 SMAGPQ0VAQ4 97 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 RNF151Q2KHN1 245 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 STPG4Q8N801 248 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 FAM104AQ969W3 186 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 CARD19Q96LW7 228 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 PRELID3AQ96N28 172 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 TIMM21Q9BVV7 248 aa6.73□□□□□ -1.33
COL6A3-214ENST00000493608 IGLV4-69A0A075B6H9 119 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 COX7A2LO14548 114 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 PHOX2AO14813 284 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 PPBPP02775 128 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 MT-ND4LP03901 98 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 SYCNQ0VAF6 134 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 ATP5L2Q7Z4Y8 100 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 ORMDL3Q8N138 153 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 PLAC8Q9NZF1 115 aa6.72□□□□□ -1.33
COL6A3-214ENST00000493608 FAT3Q8TDW7 4589 aa6.71□□□□□ -1.33
COL6A3-214ENST00000493608 PNRC1Q12796 327 aaPredicted RBP6.71□□□□□ -1.34
COL6A3-214ENST00000493608 Q6ZRU5 148 aa6.71□□□□□ -1.34
COL6A3-214ENST00000493608 OXTP01178 125 aa6.7□□□□□ -1.34
COL6A3-214ENST00000493608 RAB5AP20339 215 aa6.7□□□□□ -1.34
COL6A3-214ENST00000493608 IFITM2Q01629 132 aa6.7□□□□□ -1.34
COL6A3-214ENST00000493608 CLLU1Q5K131 121 aa6.7□□□□□ -1.34
COL6A3-214ENST00000493608 SPANXA1Q9NS26 97 aa6.7□□□□□ -1.34
COL6A3-214ENST00000493608 A0A0J9YXV3 536 aa6.69□□□□□ -1.34
COL6A3-214ENST00000493608 IFITM10A6NMD0 228 aa6.69□□□□□ -1.34
COL6A3-214ENST00000493608 GAGE2BQ13066 116 aa6.69□□□□□ -1.34
COL6A3-214ENST00000493608 C7orf33Q8WU49 177 aa6.69□□□□□ -1.34
COL6A3-214ENST00000493608 CAMK2N2Q96S95 79 aa6.69□□□□□ -1.34
COL6A3-214ENST00000493608 ADCYAP1P18509 176 aa6.68□□□□□ -1.34
COL6A3-214ENST00000493608 MRPS36P82909 103 aaKnown RBP6.68□□□□□ -1.34
COL6A3-214ENST00000493608 SPAG11BQ08648 103 aa6.68□□□□□ -1.34
COL6A3-214ENST00000493608 ZC2HC1BQ5TFG8 222 aa6.68□□□□□ -1.34
COL6A3-214ENST00000493608 MAP1LC3AQ9H492 121 aa6.68□□□□□ -1.34
COL6A3-214ENST00000493608 IGHV3OR16-9A0A0B4J2B5 98 aa6.67□□□□□ -1.34
COL6A3-214ENST00000493608 LOC107984640A0A0U1RRK4 108 aa6.67□□□□□ -1.34
COL6A3-214ENST00000493608 PRSS47A8MTI9 375 aa6.67□□□□□ -1.34
COL6A3-214ENST00000493608 APOMO95445 188 aa6.67□□□□□ -1.34
COL6A3-214ENST00000493608 IFI27P40305 119 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-214ENST00000493608 KIAA1644Q3SXP7 199 aa6.67□□□□□ -1.34
COL6A3-214ENST00000493608 ORAOV1Q8WV07 137 aa6.67□□□□□ -1.34
COL6A3-214ENST00000493608 IGLV4-3A0A075B6K6 122 aa6.66□□□□□ -1.34
COL6A3-214ENST00000493608 TMEM218A2RU14 115 aa6.66□□□□□ -1.34
COL6A3-214ENST00000493608 PTTG1IPP53801 180 aa6.66□□□□□ -1.34
COL6A3-214ENST00000493608 Q8N8P6 123 aa6.66□□□□□ -1.34
COL6A3-214ENST00000493608 C2orf48Q96LS8 159 aa6.66□□□□□ -1.34
COL6A3-214ENST00000493608 CTDSP1Q9GZU7 261 aa6.66□□□□□ -1.34
COL6A3-214ENST00000493608 LINC00474Q9P2X8 69 aa6.66□□□□□ -1.34
COL6A3-214ENST00000493608 A0A1W2PNN7 141 aa6.65□□□□□ -1.34
COL6A3-214ENST00000493608 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.65□□□□□ -1.34
COL6A3-214ENST00000493608 RPL18AQ02543 176 aaKnown RBP6.65□□□□□ -1.34
COL6A3-214ENST00000493608 C2orf66Q6UXQ4 117 aa6.65□□□□□ -1.34
COL6A3-214ENST00000493608 TMEM141Q96I45 108 aa6.65□□□□□ -1.34
COL6A3-214ENST00000493608 PKIGQ9Y2B9 76 aa6.65□□□□□ -1.34
COL6A3-214ENST00000493608 LAMTOR2Q9Y2Q5 125 aa6.65□□□□□ -1.34
COL6A3-214ENST00000493608 PYGO1Q9Y3Y4 419 aa6.65□□□□□ -1.34
COL6A3-214ENST00000493608 PRR3P79522 188 aaKnown RBP6.64□□□□□ -1.35
COL6A3-214ENST00000493608 LINC00242Q5T6M2 205 aa6.64□□□□□ -1.35
COL6A3-214ENST00000493608 C10orf25Q5T742 122 aa6.64□□□□□ -1.35
COL6A3-214ENST00000493608 UQCC3Q6UW78 93 aa6.64□□□□□ -1.35
COL6A3-214ENST00000493608 UNQ6190/PRO20217Q6UXQ8 127 aa6.64□□□□□ -1.35
COL6A3-214ENST00000493608 OR10D4PQ8NGN7 298 aa6.64□□□□□ -1.35
COL6A3-214ENST00000493608 CYSLTR1Q9Y271 337 aa6.64□□□□□ -1.35
COL6A3-214ENST00000493608 TGIF2-C20orf24A0A0A6YYL0 155 aa6.63□□□□□ -1.35
COL6A3-214ENST00000493608 TEX43Q6ZNM6 134 aa6.63□□□□□ -1.35
COL6A3-214ENST00000493608 COMMD7Q86VX2 200 aa6.63□□□□□ -1.35
COL6A3-214ENST00000493608 IMMP2LQ96T52 175 aa6.63□□□□□ -1.35
COL6A3-214ENST00000493608 A0A087WZ39 114 aa6.62□□□□□ -1.35
COL6A3-214ENST00000493608 NDUFA1O15239 70 aa6.62□□□□□ -1.35
COL6A3-214ENST00000493608 MT1HL1P0DM35 61 aa6.62□□□□□ -1.35
COL6A3-214ENST00000493608 UBE2D1P51668 147 aa6.62□□□□□ -1.35
COL6A3-214ENST00000493608 ORMDL2Q53FV1 153 aa6.62□□□□□ -1.35
COL6A3-214ENST00000493608 C9orf116Q5BN46 136 aaPredicted RBP6.62□□□□□ -1.35
COL6A3-214ENST00000493608 LINC00173Q6ZV60 143 aa6.62□□□□□ -1.35
COL6A3-214ENST00000493608 VCX2Q9H322 139 aa6.62□□□□□ -1.35
COL6A3-214ENST00000493608 KIAA0087Q14695 138 aa6.61□□□□□ -1.35
COL6A3-214ENST00000493608 SERTAD4-AS1Q5TG53 156 aa6.61□□□□□ -1.35
COL6A3-214ENST00000493608 C2orf82Q6UX34 121 aa6.61□□□□□ -1.35
COL6A3-214ENST00000493608 Q6ZN92 141 aa6.61□□□□□ -1.35
COL6A3-214ENST00000493608 PHF5AQ7RTV0 110 aaKnown RBP6.61□□□□□ -1.35
COL6A3-214ENST00000493608 C2orf88Q9BSF0 95 aa6.61□□□□□ -1.35
COL6A3-214ENST00000493608 SEC11CQ9BY50 192 aa6.61□□□□□ -1.35
COL6A3-214ENST00000493608 NXT2Q9NPJ8 142 aaKnown RBP6.61□□□□□ -1.35
COL6A3-214ENST00000493608 MRPL35Q9NZE8 188 aaKnown RBP6.61□□□□□ -1.35
COL6A3-214ENST00000493608 C6orf48Q9UBA6 75 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms