RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 FAT3Q8TDW7 4589 aa14.31□□□□□ -0.12
CLN3-232ENST00000568443 A0A087WYN8 130 aa14.31□□□□□ -0.12
CLN3-232ENST00000568443 LINC00959A0A1B0GUT2 108 aa14.31□□□□□ -0.12
CLN3-232ENST00000568443 VCYO14598 125 aa14.31□□□□□ -0.12
CLN3-232ENST00000568443 FOXI1Q12951 378 aa14.31□□□□□ -0.12
CLN3-232ENST00000568443 ADIRFQ15847 76 aa14.31□□□□□ -0.12
CLN3-232ENST00000568443 SMKR1H3BMG3 65 aa14.3□□□□□ -0.12
CLN3-232ENST00000568443 PPP1R17O96001 155 aa14.3□□□□□ -0.12
CLN3-232ENST00000568443 COX6A2Q02221 97 aa14.3□□□□□ -0.12
CLN3-232ENST00000568443 NAT8Q9UHE5 227 aa14.3□□□□□ -0.12
CLN3-232ENST00000568443 PKHD1L1Q86WI1 4243 aa14.3□□□□□ -0.12
CLN3-232ENST00000568443 GVQW2A0A096LPI5 108 aaPredicted RBP14.29□□□□□ -0.12
CLN3-232ENST00000568443 C7orf77A4D0Y5 90 aa14.29□□□□□ -0.12
CLN3-232ENST00000568443 CCL25O15444 150 aa14.29□□□□□ -0.12
CLN3-232ENST00000568443 FCER1GP30273 86 aa14.29□□□□□ -0.12
CLN3-232ENST00000568443 PEA15Q15121 130 aa14.29□□□□□ -0.12
CLN3-232ENST00000568443 SS18Q15532 418 aa14.29□□□□□ -0.12
CLN3-232ENST00000568443 MRPL52Q86TS9 123 aaKnown RBP14.29□□□□□ -0.12
CLN3-232ENST00000568443 SPACA4Q8TDM5 124 aa14.29□□□□□ -0.12
CLN3-232ENST00000568443 CDC42SE2Q9NRR3 84 aa14.29□□□□□ -0.12
CLN3-232ENST00000568443 C9JQL5 133 aa14.28□□□□□ -0.12
CLN3-232ENST00000568443 ZNF664Q8N3J9 261 aa14.28□□□□□ -0.12
CLN3-232ENST00000568443 HNRNPA3P51991 378 aaKnown RBP14.27□□□□□ -0.13
CLN3-232ENST00000568443 SUMO2P61956 95 aaKnown RBP14.27□□□□□ -0.13
CLN3-232ENST00000568443 SMIM27A0A1W2PRY6 76 aa14.26□□□□□ -0.13
CLN3-232ENST00000568443 SRSF3P84103 164 aaKnown RBP14.26□□□□□ -0.13
CLN3-232ENST00000568443 NRACQ8N912 160 aa14.26□□□□□ -0.13
CLN3-232ENST00000568443 PRSS3P2Q8NHM4 247 aa14.26□□□□□ -0.13
CLN3-232ENST00000568443 KIR2DL4Q99706 377 aa14.26□□□□□ -0.13
CLN3-232ENST00000568443 IGHV1-58A0A0C4DH39 117 aa14.25□□□□□ -0.13
CLN3-232ENST00000568443 CAMPP49913 170 aa14.25□□□□□ -0.13
CLN3-232ENST00000568443 SMAGPQ0VAQ4 97 aa14.25□□□□□ -0.13
CLN3-232ENST00000568443 FAM104BQ5XKR9 115 aa14.25□□□□□ -0.13
CLN3-232ENST00000568443 SMDT1Q9H4I9 107 aa14.25□□□□□ -0.13
CLN3-232ENST00000568443 PLAC8Q9NZF1 115 aa14.25□□□□□ -0.13
CLN3-232ENST00000568443 IGKV2-24A0A0C4DH68 120 aa14.24□□□□□ -0.13
CLN3-232ENST00000568443 PPP1R2P9O14990 202 aa14.24□□□□□ -0.13
CLN3-232ENST00000568443 MAJINQ3KP22 176 aa14.24□□□□□ -0.13
CLN3-232ENST00000568443 MRPL51Q4U2R6 128 aaKnown RBP14.24□□□□□ -0.13
CLN3-232ENST00000568443 CD164L2Q6UWJ8 174 aa14.24□□□□□ -0.13
CLN3-232ENST00000568443 A0A1B0GW15 77 aa14.23□□□□□ -0.13
CLN3-232ENST00000568443 LINC00862A6NCI5 91 aa14.22□□□□□ -0.13
CLN3-232ENST00000568443 SERTAD4-AS1Q5TG53 156 aa14.22□□□□□ -0.13
CLN3-232ENST00000568443 CKS2P33552 79 aa14.21□□□□□ -0.13
CLN3-232ENST00000568443 C7orf33Q8WU49 177 aa14.21□□□□□ -0.13
CLN3-232ENST00000568443 LINC00526Q96FQ7 95 aa14.21□□□□□ -0.13
CLN3-232ENST00000568443 CSDC2Q9Y534 153 aaKnown RBP14.21□□□□□ -0.13
CLN3-232ENST00000568443 C1orf196B1AJZ1 125 aa14.2□□□□□ -0.14
CLN3-232ENST00000568443 ZNF561-AS1K7EIQ3 104 aa14.2□□□□□ -0.14
CLN3-232ENST00000568443 TMEM18Q96B42 140 aa14.2□□□□□ -0.14
CLN3-232ENST00000568443 C20orf78Q9BR46 151 aa14.2□□□□□ -0.14
CLN3-232ENST00000568443 PKIGQ9Y2B9 76 aa14.2□□□□□ -0.14
CLN3-232ENST00000568443 UBE2D4Q9Y2X8 147 aa14.2□□□□□ -0.14
CLN3-232ENST00000568443 STPG4Q8N801 248 aa14.19□□□□□ -0.14
CLN3-232ENST00000568443 CARD19Q96LW7 228 aa14.19□□□□□ -0.14
CLN3-232ENST00000568443 TRBV24-1A0A075B6N3 115 aa14.18□□□□□ -0.14
CLN3-232ENST00000568443 S100A8P05109 93 aa14.18□□□□□ -0.14
CLN3-232ENST00000568443 MALP21145 153 aa14.18□□□□□ -0.14
CLN3-232ENST00000568443 Q6ZRU5 148 aa14.18□□□□□ -0.14
CLN3-232ENST00000568443 LINC00474Q9P2X8 69 aa14.18□□□□□ -0.14
CLN3-232ENST00000568443 A0A096LNI7 61 aa14.17□□□□□ -0.14
CLN3-232ENST00000568443 F8W036 122 aa14.17□□□□□ -0.14
CLN3-232ENST00000568443 PHOX2AO14813 284 aa14.17□□□□□ -0.14
CLN3-232ENST00000568443 RNASE13Q5GAN3 156 aaKnown RBP14.17□□□□□ -0.14
CLN3-232ENST00000568443 MRPL54Q6P161 138 aaKnown RBP14.17□□□□□ -0.14
CLN3-232ENST00000568443 TRAV13-1A0A0B4J241 112 aa14.16□□□□□ -0.14
CLN3-232ENST00000568443 COX7A2LO14548 114 aa14.16□□□□□ -0.14
CLN3-232ENST00000568443 TNFRSF6BO95407 300 aa14.16□□□□□ -0.14
CLN3-232ENST00000568443 HBBP68871 147 aa14.16□□□□□ -0.14
CLN3-232ENST00000568443 SYCNQ0VAF6 134 aa14.16□□□□□ -0.14
CLN3-232ENST00000568443 TIMM21Q9BVV7 248 aa14.16□□□□□ -0.14
CLN3-232ENST00000568443 TCAPO15273 167 aa14.15□□□□□ -0.14
CLN3-232ENST00000568443 RPL32P62910 135 aaKnown RBP14.15□□□□□ -0.14
CLN3-232ENST00000568443 D6R8Y8 96 aa14.13□□□□□ -0.15
CLN3-232ENST00000568443 Q6ZUT4 128 aa14.13□□□□□ -0.15
CLN3-232ENST00000568443 IGLV4-69A0A075B6H9 119 aa14.12□□□□□ -0.15
CLN3-232ENST00000568443 SMIM2Q9BVW6 85 aa14.12□□□□□ -0.15
CLN3-232ENST00000568443 A0A1B0GXF2 115 aa14.11□□□□□ -0.15
CLN3-232ENST00000568443 PPBPP02775 128 aa14.11□□□□□ -0.15
CLN3-232ENST00000568443 HMCN2Q8NDA2 5059 aa14.1□□□□□ -0.15
CLN3-232ENST00000568443 RPL39P62891 51 aaKnown RBP14.1□□□□□ -0.15
CLN3-232ENST00000568443 C5orf38Q86SI9 138 aa14.1□□□□□ -0.15
CLN3-232ENST00000568443 APOMO95445 188 aa14.09□□□□□ -0.15
CLN3-232ENST00000568443 NPYP01303 97 aa14.09□□□□□ -0.15
CLN3-232ENST00000568443 CAMK2N2Q96S95 79 aa14.08□□□□□ -0.16
CLN3-232ENST00000568443 SPANXA1Q9NS26 97 aa14.08□□□□□ -0.16
CLN3-232ENST00000568443 LOC107984640A0A0U1RRK4 108 aa14.07□□□□□ -0.16
CLN3-232ENST00000568443 PRR3P79522 188 aaKnown RBP14.07□□□□□ -0.16
CLN3-232ENST00000568443 GAGE2BQ13066 116 aa14.07□□□□□ -0.16
CLN3-232ENST00000568443 ATP5L2Q7Z4Y8 100 aa14.07□□□□□ -0.16
CLN3-232ENST00000568443 C2orf48Q96LS8 159 aa14.07□□□□□ -0.16
CLN3-232ENST00000568443 PTTG1IPP53801 180 aa14.06□□□□□ -0.16
CLN3-232ENST00000568443 TMEM136Q6ZRR5 245 aa14.06□□□□□ -0.16
CLN3-232ENST00000568443 ORMDL3Q8N138 153 aa14.06□□□□□ -0.16
CLN3-232ENST00000568443 MT1HL1P0DM35 61 aa14.05□□□□□ -0.16
CLN3-232ENST00000568443 RAB5AP20339 215 aa14.05□□□□□ -0.16
CLN3-232ENST00000568443 PRELID3AQ96N28 172 aa14.05□□□□□ -0.16
CLN3-232ENST00000568443 OPRPNQ99935 248 aaPredicted RBP14.05□□□□□ -0.16
CLN3-232ENST00000568443 PLA2G2DQ9UNK4 145 aa14.05□□□□□ -0.16
CLN3-232ENST00000568443 MRPS36P82909 103 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms