RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SLC51BQ86UW2 128 aa10.46□□□□□ -0.73
CLN3-211ENST00000564091 ST20Q9HBF5 79 aa10.46□□□□□ -0.73
CLN3-211ENST00000564091 CDC42SE2Q9NRR3 84 aa10.46□□□□□ -0.73
CLN3-211ENST00000564091 A8MWL6 223 aa10.45□□□□□ -0.74
CLN3-211ENST00000564091 ZNF561-AS1K7EIQ3 104 aa10.45□□□□□ -0.74
CLN3-211ENST00000564091 SYCNQ0VAF6 134 aa10.45□□□□□ -0.74
CLN3-211ENST00000564091 SS18Q15532 418 aa10.45□□□□□ -0.74
CLN3-211ENST00000564091 REG3GQ6UW15 175 aa10.45□□□□□ -0.74
CLN3-211ENST00000564091 CD164L2Q6UWJ8 174 aa10.45□□□□□ -0.74
CLN3-211ENST00000564091 MRAP2Q96G30 205 aa10.45□□□□□ -0.74
CLN3-211ENST00000564091 Q6ZRP5 223 aa10.44□□□□□ -0.74
CLN3-211ENST00000564091 POLR2KP53803 58 aaKnown RBP10.43□□□□□ -0.74
CLN3-211ENST00000564091 GAGE2BQ13066 116 aa10.43□□□□□ -0.74
CLN3-211ENST00000564091 FAM231DQ6ZW35 169 aa10.43□□□□□ -0.74
CLN3-211ENST00000564091 ZNF664Q8N3J9 261 aa10.43□□□□□ -0.74
CLN3-211ENST00000564091 PKIGQ9Y2B9 76 aa10.43□□□□□ -0.74
CLN3-211ENST00000564091 CAMPP49913 170 aa10.42□□□□□ -0.74
CLN3-211ENST00000564091 CEBPGP53567 150 aa10.42□□□□□ -0.74
CLN3-211ENST00000564091 PTTG1IPP53801 180 aa10.42□□□□□ -0.74
CLN3-211ENST00000564091 MRPL52Q86TS9 123 aaKnown RBP10.42□□□□□ -0.74
CLN3-211ENST00000564091 TCTE3Q8IZS6 198 aa10.42□□□□□ -0.74
CLN3-211ENST00000564091 IGLV4-69A0A075B6H9 119 aa10.41□□□□□ -0.74
CLN3-211ENST00000564091 A0A1W2PNN7 141 aa10.41□□□□□ -0.74
CLN3-211ENST00000564091 TMEM250H0YL14 139 aa10.41□□□□□ -0.74
CLN3-211ENST00000564091 BORCS7Q96B45 105 aa10.41□□□□□ -0.74
CLN3-211ENST00000564091 LPAP08519 4548 aa10.41□□□□□ -0.74
CLN3-211ENST00000564091 TRBV27A0A0K0K1C4 114 aa10.4□□□□□ -0.74
CLN3-211ENST00000564091 C7orf77A4D0Y5 90 aa10.4□□□□□ -0.74
CLN3-211ENST00000564091 RAB4AP20338 218 aa10.4□□□□□ -0.74
CLN3-211ENST00000564091 MALP21145 153 aa10.4□□□□□ -0.74
CLN3-211ENST00000564091 CT83Q5H943 113 aa10.4□□□□□ -0.74
CLN3-211ENST00000564091 TMEM191AQ9H0A3 160 aa10.4□□□□□ -0.74
CLN3-211ENST00000564091 LOC107984640A0A0U1RRK4 108 aa10.39□□□□□ -0.75
CLN3-211ENST00000564091 A0A1B0GUT8 65 aa10.39□□□□□ -0.75
CLN3-211ENST00000564091 HIGD1CA8MV81 97 aa10.39□□□□□ -0.75
CLN3-211ENST00000564091 SMKR1H3BMG3 65 aa10.39□□□□□ -0.75
CLN3-211ENST00000564091 RNASE13Q5GAN3 156 aaKnown RBP10.39□□□□□ -0.75
CLN3-211ENST00000564091 AMN1Q8IY45 258 aa10.39□□□□□ -0.75
CLN3-211ENST00000564091 COX7A2LO14548 114 aa10.38□□□□□ -0.75
CLN3-211ENST00000564091 NUP35Q8NFH5 326 aa10.38□□□□□ -0.75
CLN3-211ENST00000564091 TSKUQ8WUA8 353 aa10.38□□□□□ -0.75
CLN3-211ENST00000564091 ISOC2Q96AB3 205 aa10.38□□□□□ -0.75
CLN3-211ENST00000564091 FAM210AQ96ND0 272 aa10.38□□□□□ -0.75
CLN3-211ENST00000564091 TRAV13-1A0A0B4J241 112 aa10.37□□□□□ -0.75
CLN3-211ENST00000564091 C1orf196B1AJZ1 125 aa10.37□□□□□ -0.75
CLN3-211ENST00000564091 FCER1GP30273 86 aa10.37□□□□□ -0.75
CLN3-211ENST00000564091 CAMK2N2Q96S95 79 aa10.37□□□□□ -0.75
CLN3-211ENST00000564091 VCYO14598 125 aa10.36□□□□□ -0.75
CLN3-211ENST00000564091 C9orf116Q5BN46 136 aaPredicted RBP10.36□□□□□ -0.75
CLN3-211ENST00000564091 ALKAL2Q6UX46 152 aa10.36□□□□□ -0.75
CLN3-211ENST00000564091 C5orf38Q86SI9 138 aa10.36□□□□□ -0.75
CLN3-211ENST00000564091 LINC01551Q86U37 167 aa10.36□□□□□ -0.75
CLN3-211ENST00000564091 PSORS1C2Q9UIG4 136 aa10.36□□□□□ -0.75
CLN3-211ENST00000564091 UBE2D4Q9Y2X8 147 aa10.36□□□□□ -0.75
CLN3-211ENST00000564091 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.35□□□□□ -0.75
CLN3-211ENST00000564091 APOMO95445 188 aa10.35□□□□□ -0.75
CLN3-211ENST00000564091 BLOC1S1P78537 153 aa10.35□□□□□ -0.75
CLN3-211ENST00000564091 OPRPNQ99935 248 aaPredicted RBP10.35□□□□□ -0.75
CLN3-211ENST00000564091 SMIM7Q9BQ49 75 aa10.35□□□□□ -0.75
CLN3-211ENST00000564091 PHF5AQ7RTV0 110 aaKnown RBP10.34□□□□□ -0.75
CLN3-211ENST00000564091 NRACQ8N912 160 aa10.34□□□□□ -0.75
CLN3-211ENST00000564091 MT-ND6P03923 174 aa10.33□□□□□ -0.76
CLN3-211ENST00000564091 SUMO2P61956 95 aaKnown RBP10.33□□□□□ -0.76
CLN3-211ENST00000564091 RPL18AQ02543 176 aaKnown RBP10.33□□□□□ -0.76
CLN3-211ENST00000564091 Q6ZUT4 128 aa10.33□□□□□ -0.76
CLN3-211ENST00000564091 C2orf48Q96LS8 159 aa10.33□□□□□ -0.76
CLN3-211ENST00000564091 OSTCQ9NRP0 149 aa10.33□□□□□ -0.76
CLN3-211ENST00000564091 CSDC2Q9Y534 153 aaKnown RBP10.33□□□□□ -0.76
CLN3-211ENST00000564091 RIGQ13278 110 aa10.32□□□□□ -0.76
CLN3-211ENST00000564091 C1orf137Q5JT78 98 aa10.32□□□□□ -0.76
CLN3-211ENST00000564091 EIF5A2Q9GZV4 153 aaKnown RBP10.32□□□□□ -0.76
CLN3-211ENST00000564091 ZNF727A8MUV8 499 aa10.31□□□□□ -0.76
CLN3-211ENST00000564091 SPAG11BQ08648 103 aa10.31□□□□□ -0.76
CLN3-211ENST00000564091 KIR2DL4Q99706 377 aa10.31□□□□□ -0.76
CLN3-211ENST00000564091 V9GYV3 84 aa10.31□□□□□ -0.76
CLN3-211ENST00000564091 PPP1R17O96001 155 aa10.3□□□□□ -0.76
CLN3-211ENST00000564091 SMAGPQ0VAQ4 97 aa10.3□□□□□ -0.76
CLN3-211ENST00000564091 SRP19P09132 144 aaKnown RBP10.28□□□□□ -0.76
CLN3-211ENST00000564091 MRPL51Q4U2R6 128 aaKnown RBP10.28□□□□□ -0.76
CLN3-211ENST00000564091 PPP1R2P9O14990 202 aa10.27□□□□□ -0.77
CLN3-211ENST00000564091 RPL39P62891 51 aaKnown RBP10.27□□□□□ -0.77
CLN3-211ENST00000564091 FAM104BQ5XKR9 115 aa10.27□□□□□ -0.77
CLN3-211ENST00000564091 FAM104AQ969W3 186 aa10.27□□□□□ -0.77
CLN3-211ENST00000564091 TIMM21Q9BVV7 248 aa10.27□□□□□ -0.77
CLN3-211ENST00000564091 FAM168BA1KXE4 195 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 RNF151Q2KHN1 245 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 C10orf25Q5T742 122 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 KRTAP11-1Q8IUC1 163 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 PRR26Q8N8Z3 221 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 ORAOV1Q8WV07 137 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 TMEM18Q96B42 140 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 NAT8BQ9UHF3 227 aa10.26□□□□□ -0.77
CLN3-211ENST00000564091 IGLV7-43P04211 117 aa10.25□□□□□ -0.77
CLN3-211ENST00000564091 AKAP14Q86UN6 197 aa10.25□□□□□ -0.77
CLN3-211ENST00000564091 OR10D4PQ8NGN7 298 aa10.25□□□□□ -0.77
CLN3-211ENST00000564091 C20orf78Q9BR46 151 aa10.25□□□□□ -0.77
CLN3-211ENST00000564091 MRPL35Q9NZE8 188 aaKnown RBP10.25□□□□□ -0.77
CLN3-211ENST00000564091 A0A087WZ39 114 aa10.24□□□□□ -0.77
CLN3-211ENST00000564091 TRBV24-1A0A075B6N3 115 aa10.23□□□□□ -0.77
CLN3-211ENST00000564091 IGHV3OR16-9A0A0B4J2B5 98 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms