RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CEBPGP53567 150 aa10.87□□□□□ -0.67
VPS9D1-203ENST00000563798 PRSS3P2Q8NHM4 247 aa10.87□□□□□ -0.67
VPS9D1-203ENST00000563798 ZNF727A8MUV8 499 aa10.86□□□□□ -0.67
VPS9D1-203ENST00000563798 SRP19P09132 144 aaKnown RBP10.86□□□□□ -0.67
VPS9D1-203ENST00000563798 CDC42SE2Q9NRR3 84 aa10.86□□□□□ -0.67
VPS9D1-203ENST00000563798 TMEM242Q9NWH2 141 aa10.86□□□□□ -0.67
VPS9D1-203ENST00000563798 V9GYV3 84 aa10.85□□□□□ -0.67
VPS9D1-203ENST00000563798 IGHV1-58A0A0C4DH39 117 aa10.84□□□□□ -0.67
VPS9D1-203ENST00000563798 CCL25O15444 150 aa10.84□□□□□ -0.67
VPS9D1-203ENST00000563798 XCL1P47992 114 aa10.84□□□□□ -0.67
VPS9D1-203ENST00000563798 AMN1Q8IY45 258 aa10.84□□□□□ -0.67
VPS9D1-203ENST00000563798 C7orf33Q8WU49 177 aa10.84□□□□□ -0.67
VPS9D1-203ENST00000563798 hCG_2014768A0A024R1R8 64 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 C7orf77A4D0Y5 90 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 VCYO14598 125 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 PHOX2AO14813 284 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 PPP1R17O96001 155 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 CD164L2Q6UWJ8 174 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 ZNF664Q8N3J9 261 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 PLA2G2DQ9UNK4 145 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 PKIGQ9Y2B9 76 aa10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 CSDC2Q9Y534 153 aaKnown RBP10.83□□□□□ -0.68
VPS9D1-203ENST00000563798 RIGQ13278 110 aa10.82□□□□□ -0.68
VPS9D1-203ENST00000563798 SS18Q15532 418 aa10.82□□□□□ -0.68
VPS9D1-203ENST00000563798 MAJINQ3KP22 176 aa10.82□□□□□ -0.68
VPS9D1-203ENST00000563798 FAM74A3Q4VXF1 159 aa10.82□□□□□ -0.68
VPS9D1-203ENST00000563798 NUP35Q8NFH5 326 aa10.82□□□□□ -0.68
VPS9D1-203ENST00000563798 ISOC2Q96AB3 205 aa10.82□□□□□ -0.68
VPS9D1-203ENST00000563798 LINC00474Q9P2X8 69 aa10.82□□□□□ -0.68
VPS9D1-203ENST00000563798 NRACQ8N912 160 aa10.81□□□□□ -0.68
VPS9D1-203ENST00000563798 A0A096LNI7 61 aa10.8□□□□□ -0.68
VPS9D1-203ENST00000563798 IGKV2-24A0A0C4DH68 120 aa10.8□□□□□ -0.68
VPS9D1-203ENST00000563798 TMEM241Q24JQ0 296 aa10.8□□□□□ -0.68
VPS9D1-203ENST00000563798 STPG4Q8N801 248 aa10.8□□□□□ -0.68
VPS9D1-203ENST00000563798 NAT8BQ9UHF3 227 aa10.8□□□□□ -0.68
VPS9D1-203ENST00000563798 SUMO2P61956 95 aaKnown RBP10.79□□□□□ -0.68
VPS9D1-203ENST00000563798 C1orf196B1AJZ1 125 aa10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 SMKR1H3BMG3 65 aa10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 PPP1R2P9O14990 202 aa10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 RPL23P62829 140 aaKnown RBP10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 PRR3P79522 188 aaKnown RBP10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 SMAGPQ0VAQ4 97 aa10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 FAM104BQ5XKR9 115 aa10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 CARD19Q96LW7 228 aa10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 UBE2D4Q9Y2X8 147 aa10.78□□□□□ -0.68
VPS9D1-203ENST00000563798 SMIM27A0A1W2PRY6 76 aa10.77□□□□□ -0.69
VPS9D1-203ENST00000563798 LINC00862A6NCI5 91 aa10.77□□□□□ -0.69
VPS9D1-203ENST00000563798 FCER1GP30273 86 aa10.77□□□□□ -0.69
VPS9D1-203ENST00000563798 SYCNQ0VAF6 134 aa10.77□□□□□ -0.69
VPS9D1-203ENST00000563798 LINC00526Q96FQ7 95 aa10.77□□□□□ -0.69
VPS9D1-203ENST00000563798 KIR2DL4Q99706 377 aa10.77□□□□□ -0.69
VPS9D1-203ENST00000563798 TIMM21Q9BVV7 248 aa10.77□□□□□ -0.69
VPS9D1-203ENST00000563798 TRBV24-1A0A075B6N3 115 aa10.76□□□□□ -0.69
VPS9D1-203ENST00000563798 ZNF561-AS1K7EIQ3 104 aa10.76□□□□□ -0.69
VPS9D1-203ENST00000563798 RPL32P62910 135 aaKnown RBP10.76□□□□□ -0.69
VPS9D1-203ENST00000563798 C20orf78Q9BR46 151 aa10.76□□□□□ -0.69
VPS9D1-203ENST00000563798 A0A1B0GW15 77 aa10.75□□□□□ -0.69
VPS9D1-203ENST00000563798 C9JQL5 133 aa10.75□□□□□ -0.69
VPS9D1-203ENST00000563798 MRPL51Q4U2R6 128 aaKnown RBP10.75□□□□□ -0.69
VPS9D1-203ENST00000563798 SMDT1Q9H4I9 107 aa10.75□□□□□ -0.69
VPS9D1-203ENST00000563798 NAT8Q9UHE5 227 aa10.75□□□□□ -0.69
VPS9D1-203ENST00000563798 COX7A2LO14548 114 aa10.74□□□□□ -0.69
VPS9D1-203ENST00000563798 CAMPP49913 170 aa10.74□□□□□ -0.69
VPS9D1-203ENST00000563798 LINC01600Q96MT4 127 aa10.74□□□□□ -0.69
VPS9D1-203ENST00000563798 TCAPO15273 167 aa10.73□□□□□ -0.69
VPS9D1-203ENST00000563798 ADIRFQ15847 76 aa10.73□□□□□ -0.69
VPS9D1-203ENST00000563798 TMEM18Q96B42 140 aa10.73□□□□□ -0.69
VPS9D1-203ENST00000563798 IGLV4-69A0A075B6H9 119 aa10.72□□□□□ -0.69
VPS9D1-203ENST00000563798 PTTG1IPP53801 180 aa10.72□□□□□ -0.69
VPS9D1-203ENST00000563798 C2orf48Q96LS8 159 aa10.72□□□□□ -0.69
VPS9D1-203ENST00000563798 MALP21145 153 aa10.71□□□□□ -0.69
VPS9D1-203ENST00000563798 PEA15Q15121 130 aa10.71□□□□□ -0.69
VPS9D1-203ENST00000563798 SPINK6Q6UWN8 80 aa10.71□□□□□ -0.69
VPS9D1-203ENST00000563798 TNXBP22105 4242 aa10.71□□□□□ -0.7
VPS9D1-203ENST00000563798 TRAV13-1A0A0B4J241 112 aa10.7□□□□□ -0.7
VPS9D1-203ENST00000563798 LOC107984640A0A0U1RRK4 108 aa10.7□□□□□ -0.7
VPS9D1-203ENST00000563798 CKS2P33552 79 aa10.7□□□□□ -0.7
VPS9D1-203ENST00000563798 SRSF3P84103 164 aaKnown RBP10.7□□□□□ -0.7
VPS9D1-203ENST00000563798 SRSF9Q13242 221 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS9D1-203ENST00000563798 Q6ZUT4 128 aa10.7□□□□□ -0.7
VPS9D1-203ENST00000563798 FAM104AQ969W3 186 aa10.7□□□□□ -0.7
VPS9D1-203ENST00000563798 A0A1B0GVG6 124 aa10.69□□□□□ -0.7
VPS9D1-203ENST00000563798 TNFRSF6BO95407 300 aa10.69□□□□□ -0.7
VPS9D1-203ENST00000563798 RNASE13Q5GAN3 156 aaKnown RBP10.69□□□□□ -0.7
VPS9D1-203ENST00000563798 Q6ZRP5 223 aa10.69□□□□□ -0.7
VPS9D1-203ENST00000563798 A0A1B0GXF2 115 aa10.68□□□□□ -0.7
VPS9D1-203ENST00000563798 APOMO95445 188 aa10.68□□□□□ -0.7
VPS9D1-203ENST00000563798 S100A8P05109 93 aa10.68□□□□□ -0.7
VPS9D1-203ENST00000563798 RNF151Q2KHN1 245 aa10.68□□□□□ -0.7
VPS9D1-203ENST00000563798 CAMK2N2Q96S95 79 aa10.68□□□□□ -0.7
VPS9D1-203ENST00000563798 SMIM2Q9BVW6 85 aa10.68□□□□□ -0.7
VPS9D1-203ENST00000563798 F8W036 122 aa10.67□□□□□ -0.7
VPS9D1-203ENST00000563798 PPBPP02775 128 aa10.67□□□□□ -0.7
VPS9D1-203ENST00000563798 HBBP68871 147 aa10.67□□□□□ -0.7
VPS9D1-203ENST00000563798 MRPS36P82909 103 aaKnown RBP10.67□□□□□ -0.7
VPS9D1-203ENST00000563798 C5orf38Q86SI9 138 aa10.67□□□□□ -0.7
VPS9D1-203ENST00000563798 OR10D4PQ8NGN7 298 aa10.67□□□□□ -0.7
VPS9D1-203ENST00000563798 SPANXA1Q9NS26 97 aa10.67□□□□□ -0.7
VPS9D1-203ENST00000563798 IGHV3OR16-9A0A0B4J2B5 98 aa10.66□□□□□ -0.7
VPS9D1-203ENST00000563798 A0A0J9YXV3 536 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms